mRNA_L-elsbetiae_contig6010.14541.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: D8LRF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF7_ECTSI) HSP 1 Score: 450 bits (1158), Expect = 4.830e-151 Identity = 221/287 (77.00%), Postives = 246/287 (85.71%), Query Frame = 1 Query: 1 IHLEGQVSRDWNGESTTLFTAEAPFQPEVEPARVTVNATFVYCTQGEYWDGSV--CQSCADVGLNPQGLNCDGVGTLLETLPLESGYWRSAFTSTTIRECFNDDACVGSSESSGRITHPDDYCDTGYLGPYCAVCEGGYTTGVSHTCHSCDSSYWAGMVVIMALTGVVLVVGAVIILNDLVGNPALTDLSETHFSVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATYLYT 855 I L G+VS WNGESTT+FTAEAP Q EV+P ++NA+FVYC G+YW S C CADV LNP+GL+CD GTLLETLPL GYWRS TST IRECFNDDAC+GS E S RI+ P+DYCDTGY+GPYCAVC GYTTGVSHTCHSCD SYWAGMVV+MALTGVVLVVG VI+LNDLVGNPALTDLSETHFSVMSRR+RTIPFHKLKIP VV QI+TQYASITSIEF PVFQTFLS ISVINL+LGW+ +SVCIIDVNF+GNL+A T+GPL++LLVL ATYLYT Sbjct: 380 ISLNGEVSTYWNGESTTVFTAEAPHQEEVDPFATSINASFVYCNAGQYWVASETSCMMCADVALNPEGLSCDSEGTLLETLPLAEGYWRSTETSTNIRECFNDDACIGS-EVSQRISSPNDYCDTGYMGPYCAVCMDGYTTGVSHTCHSCDGSYWAGMVVVMALTGVVLVVGVVIVLNDLVGNPALTDLSETHFSVMSRRIRTIPFHKLKIPFVVLQIITQYASITSIEFAPVFQTFLSTISVINLDLGWVLTSVCIIDVNFYGNLIAATVGPLMVLLVLAATYLYT 665
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: A0A6H5JU27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU27_9PHAE) HSP 1 Score: 291 bits (745), Expect = 1.300e-88 Identity = 160/221 (72.40%), Postives = 178/221 (80.54%), Query Frame = 1 Query: 466 MVVIMALTGVVLVVGAVIILNDLVGNPALTDLSETHFSVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATYLYTCKKHGLEPQPREVDDQASYPMSSMGMPSMNYHHGPAAAGASTSLSPRSSSEDGTSAEPAGSVIRRVQDKYATFALTMAFLLYSTVSTVIFQ 1128 MVV+MALTGVVLVVG VI+LNDLVGNPALTDLSETHFSVMSR++RT+PFHKLKIP VV QIMTQYASITSIEF P+FQTFLS ISVINL+LGW+ +S+CIIDVNF+GNL+A T+GPL+ LLVL TYLYTCKKH LEP+PRE DDQA YPMSS SP +SSE+ T AEP V+RRVQDKY T ALTMAF LYSTVSTVIFQ Sbjct: 1 MVVVMALTGVVLVVGVVIVLNDLVGNPALTDLSETHFSVMSRKIRTMPFHKLKIPFVVLQIMTQYASITSIEFAPMFQTFLSTISVINLDLGWVLTSLCIIDVNFYGNLLAATVGPLMALLVLAVTYLYTCKKHRLEPRPREADDQAIYPMSSF------------------RTSPNTSSENDT-AEPYQGVMRRVQDKYTTVALTMAFFLYSTVSTVIFQ 202
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: D8LRF9_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRF9_ECTSI) HSP 1 Score: 238 bits (607), Expect = 2.280e-66 Identity = 141/379 (37.20%), Postives = 212/379 (55.94%), Query Frame = 1 Query: 1 IHLEGQVSRDWNGESTTLFTAEAPFQPEVEPARVTVNATFVYCTQGEYWDGSVCQSCADVGLNPQGLNCDGVGTLLETLPLESGYWRSAFTSTTIRECFNDDACVGSSESSGRITHPDDYCDTGYLGPYCAVCEGGYTTGVSHTCHSCDSSYWAGMVVIMALTGVVLVVGAVIILNDLVGNPALTD-LSETHFSVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATYLYTCKKHGLEPQPREVDDQASYPMSSMGMPSMNYHHGPAAAGASTSLSPRSSSEDGTSAEPAG--SVIRRVQDKYATFALTMAFLLYSTVSTVIFQ 1128 + + G ++ D+NG + LF AE+ + A VN TF YC QGEY+ C C+D+ L+ +GL+CD G L TLP+ SGYWRS+ +TTIR+C ++AC G S I+ DDYC GY GPYCAVC GY G+S+ CH C ++ A M V+ L G++ + A ++ L+ P S M +++ +P HKLKIP+VVFQI+TQYA IT+++FPP F L + V+NL++GW+ S+ CI NF+G LV TT+ P+ L L L T++Y + P+ + + ++++ ++ S S G A SV++R ++ +T +FL+YSTVST++FQ Sbjct: 1016 VAITGSLTSDFNGPTQALFKAES--RQSGNTALAMVNTTFYYCQQGEYFSDDECLLCSDLELDGEGLDCDEPGVLQLTLPVASGYWRSSDDTTTIRKCLYEEACEGGS----AISQSDDYCAVGYQGPYCAVCLSGYAGGISNGCHECTEAFRAWMYVLAVLGGLLALACAWLLFRYLIQEPVSPGRFLSCRNSRMVSKVKELPLHKLKIPIVVFQILTQYADITTVDFPPAFTKLLGFMDVLNLDMGWVLSASCIFSPNFYGRLVLTTLVPIALGLALCCTFMYAKSRTVRAGLPKANEGSSMRSVNTVVSXXXXXXXXXXXXXXPATVVAGSRSGHGIMMSEARQMSVVKR---RHVGVLVTASFLVYSTVSTIVFQ 1385
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: D7FHV0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV0_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.930e-65 Identity = 113/148 (76.35%), Postives = 128/148 (86.49%), Query Frame = 1 Query: 412 TTGVSHTCHSCDSSYWAGMVVIMALTGVVLVVGAVIILNDLVGNPALTDLSETHFSVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATYLYT 855 TT V + S ++ VV+MALTGVVLVVG VI+LNDLVGNPALTDLSETHFSVMSRR+RTIPFHKLKIP VV QI+TQYASITSIEF PVFQTFLS ISVINL+LGW+ +SVCIIDVNF+GNL+A T+GPL++LLVL ATYLYT Sbjct: 73 TTFVGNVAGERGGSLYSSTVVVMALTGVVLVVGVVIVLNDLVGNPALTDLSETHFSVMSRRIRTIPFHKLKIPFVVLQIITQYASITSIEFAPVFQTFLSTISVINLDLGWVLTSVCIIDVNFYGNLIAATVGPLMVLLVLAATYLYT 220
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: A0A6H5JU65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU65_9PHAE) HSP 1 Score: 235 bits (600), Expect = 2.010e-65 Identity = 140/380 (36.84%), Postives = 217/380 (57.11%), Query Frame = 1 Query: 7 LEGQVSRDWNGESTTLFTAEAPFQPEVEPARVTVNATFVYCTQGEYWDGSVCQSCADVGLNPQGLNCDGVGTLLETLPLESGYWRSAFTSTTIRECFNDDACVGSSESSGRITHPDDYCDTGYLGPYCAVCEGGYTTGVSHTCHSCDSSYWAGMVVIMALTGVVLVVGAVIILNDLVGNPALTDLSETHF-----SVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATYLYTCKKHGLEPQPREVDDQASYPMSSM-GMPSMNYHHGPAAAGASTSLSPRSSSEDGTSAEPAGSVIRRVQDKYATFALTMAFLLYSTVSTVIFQ 1128 + G ++ D+NG + LF AE+ + A VN TF YC +GEY++ C C+D+ L+ +GL+CD G L TLP+ SGYWRS+ +TTIR+C ++AC G + I+ DDYC GY GPYCAVC GY G+S+ CH C ++ AGM ++ L G++ + A ++L L+ P +S F S M +++ +P HKLKIP+VVFQI+TQYA IT+++FPP + L + V+NL++GW+ S+ CI NF+G LV TT+ P++ L L T++Y + P+ + + ++++ A A+ R+ S SV++R ++ +T +FL+YSTVST++FQ Sbjct: 1314 ITGSLTSDFNGPTHALFKAES--RQSGNTALAMVNTTFYYCLEGEYFNDEECLLCSDLELDGEGLDCDEPGVLQSTLPVASGYWRSSADTTTIRQCLYEEACKGGTV----ISQSDDYCAVGYQGPYCAVCLSGYAGGISNGCHECTEAFRAGMYLLAVLGGLLAMACAWLLLRYLIQEP----VSPGRFLSCGNSRMVSKVKELPVHKLKIPIVVFQILTQYADITTVDFPPAYTKLLGFMDVLNLDMGWVLSASCIFSPNFYGRLVLTTLVPIVFGLALCCTFMYAKSRSVRVGLPKANEGSSIRSINTVVSXXXXXXXXXXXXAPATVFTGTRNGHGMIMSEARQMSVVKR---RHVGVLVTASFLVYSTVSTIVFQ 1680
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: A0A836CF88_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF88_9STRA) HSP 1 Score: 156 bits (394), Expect = 3.520e-38 Identity = 93/262 (35.50%), Postives = 133/262 (50.76%), Query Frame = 1 Query: 85 VEPARVTVNATFVYCTQGEYWDG--SVCQSCADVGLNPQGLNCDGVGTLLETLPLESGYWRSAFTSTTIRECFNDDACVGSSESSGRITHPDDYCDTGYLGPYCAVCEGGYTTGVSHTCHSCDSSYWAGMVVIMALTGVVL----VVGAVIILNDLVGNPALTDLSETH--FSVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATY 846 V A TV++T YC G YWD VC +C D+ GL C G L LP++ G+W + C +D C+G G C G GPYC++CE G+ G+ + CH+C +S A VG V++L A+ D+ + S R R + + K KIPLV FQI++Q+ IT IE+PPV FL+A++V+NL LGW S+ C+++VNF+ L+ T+ PL + VL ATY Sbjct: 426 VTVASATVHSTHWYCRAGLYWDKLQGVCMACGDLPGGASGLRCSAPGATLSYLPVQPGFWVPPDAPLRVLACRSDKVCIG-----GNGLDTSTLCHEGNTGPYCSLCEDGFAPGMYNVCHACTNSSKATAAAXXXXXXXXXXXXAAVGLVVLLGLTSHFAAVNDVWDCSGMVSTFVRIAREMDWGKFKIPLVAFQIISQFPQITGIEYPPVLARFLAALNVLNLNLGWWLSATCLLEVNFYQQLLLATLTPLCVTAVLVATY 682
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: D7G3S0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3S0_ECTSI) HSP 1 Score: 152 bits (384), Expect = 8.550e-37 Identity = 94/242 (38.84%), Postives = 140/242 (57.85%), Query Frame = 1 Query: 148 DGSVCQSCADVGLNPQGLNCDGVGTLLETLPLESGYWRSAFTSTTIRECFNDDACVGSSESSGRITHPDDYCDTGYLGPYCAVCEGGYTTGVSHTCHSCDSSYWAGMVVIMALTGVVLVVGAVIILNDLVGNPALTDLSETHFSVMSRR-LRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCI-IDVNFHGNLVATTIGPLLLLLVLFATYLYTCKKH 867 DG++ +C +V L + DG+ LETL L+ GYWR+ S I C+N DAC G G+ T D +C +GY GPYCAVCE Y++ ++HTC C SS G+ VI A+ +V V+ + ++ T+ E F RR L +P LKI +VV+QI+TQ+A ++ FP ++Q FLSAI VIN ++G + ++ C+ D++FH L+ TIGPL++ L TY ++H Sbjct: 1156 DGTITPTC-EVPLEHTSADEDGL--TLETLKLDEGYWRATTESVIILACYNADACAG-----GK-TGADSFCASGYQGPYCAVCETDYSSSLAHTCKHCSSSRRRGLTVIAAIAVIVTVLAFAAVFQYMLS----TEHEEGIFGCFRRRVLGAVPVESLKIIVVVWQILTQFADAANVTFPGLYQDFLSAIDVINFDIGSVLAAGCLWSDMDFHDRLLVNTIGPLVVAGFLAMTYGIVIRRH 1384
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: A0A835YZ05_9STRA (UCH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ05_9STRA) HSP 1 Score: 150 bits (378), Expect = 4.970e-36 Identity = 88/252 (34.92%), Postives = 138/252 (54.76%), Query Frame = 1 Query: 127 CTQGEYW-----DGSV-CQSCADVGLNPQGLNCDGVGTLLETLPLESGYWRSAFTSTTIRECFNDDACVGSSESSGRITHPDDYCDTGYLGPYCAVCEGGYTTGVSHTCHSCDSSYWAGMVVIMALTGVVLVVGAVIILNDLVGNPALTDLSE----THFSVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATYLY 852 C G+Y DG+ C++C GL C G+G + TLPL+SGYWR IR+C+N DAC+GS+ ++ DDYC GY GPYC VC Y V + C C ++ A + +A +V++ A +++ + TD S+ T+ S R + +L++P+VV Q++TQY SIT + P + FL+ +S+ +L+L WL S C ++VNF+ L+ T+ PL ++ ++FA LY Sbjct: 422 CGNGQYIGAGAVDGTFGCKACDSTGLA-----CTGIGATIATLPLDSGYWRETLMQELIRKCWNSDACIGSAAAASV----DDYCAAGYEGPYCTVCSADYAALVGYRCVECTTTSVAIALSAIAAIAIVVMFLAWVLVRAVGEAHTATDGSDRVEATNTSSRVARTLLVLMRRLRVPIVVLQVLTQYVSITGGDLPLSYTHFLNGVSIFSLDLRWLTSPGCAMNVNFYDRLLMATLSPLAIIALIFAGRLY 664
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: A0A6H5K0E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K0E9_9PHAE) HSP 1 Score: 149 bits (375), Expect = 1.270e-35 Identity = 79/256 (30.86%), Postives = 135/256 (52.73%), Query Frame = 1 Query: 127 CTQGEYWDGSVCQSCADVGLNPQGLNCDGVGTLLETLPLESGYWRSAFTSTTIRECFNDDACVGSSESSGRITHPDDYCDTGYLGPYCAVCEGGYTTGVSHTCHSCDSSYWAGMVVIMALTGVVLVVGAVIILNDLVGNPALTDLSETHFSVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATYLYTCKKHGLEPQPREV 894 C + +GS+ C +V + DG L+TL ++ G+WR++ +ST + C++ DAC+G +T YC+ GY GPYC +C GYT +S C C + G+ V + L +++ + ++ G + ++ R IP LKI +V +QI+TQ+ S+ ++ +P V+Q L + V N +L WL S+ C++D+NFHG L+ +TI P++ LL+L TY + + EP+ + Sbjct: 1021 CDGCVFAEGSLAPICTEVMDHS---TSDGGNVTLQTLSIDRGFWRASTSSTEVLACYHADACLGG------VTGASGYCEEGYEGPYCGICSDGYTEQLSFACSKCSENSAGGIAVAVVLALLIVFLAVAVVSYVTSGEVGMGRKG----GIVELVTRYIPLQSLKIVIVSWQILTQFTSVANVTYPDVYQDLLDVLDVFNFDLSWLLSAGCVVDMNFHGRLLVSTISPIVALLLLACTYAAAARINRGEPEKLNI 1263
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Match: A0A835YVC3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVC3_9STRA) HSP 1 Score: 148 bits (374), Expect = 1.350e-35 Identity = 87/252 (34.52%), Postives = 137/252 (54.37%), Query Frame = 1 Query: 127 CTQGEYW-----DGSV-CQSCADVGLNPQGLNCDGVGTLLETLPLESGYWRSAFTSTTIRECFNDDACVGSSESSGRITHPDDYCDTGYLGPYCAVCEGGYTTGVSHTCHSCDSSYWAGMVVIMALTGVVLVVGAVIILNDLVGNPALTDLSE----THFSVMSRRLRTIPFHKLKIPLVVFQIMTQYASITSIEFPPVFQTFLSAISVINLELGWLFSSVCIIDVNFHGNLVATTIGPLLLLLVLFATYLY 852 C G+Y DG+ C++C GL C G+G + TLPL+SGYWR IR+C+N DAC+G + ++ DDYC GY GPYC VC Y V + C C ++ A + +A +V++ A +++ + TD S+ T+ S R + +L++P+VV Q++TQY SIT + P + FL+ +S+ +L+L WL S C ++VNF+ L+ T+ PL ++ ++FA LY Sbjct: 174 CGNGQYIGAGAVDGTFGCKACDSTGLA-----CTGIGATIATLPLDSGYWRETLMQELIRKCWNSDACIGGAAAASV----DDYCAAGYEGPYCTVCSADYAALVGYRCVECTTTSVAIALSAIAAIAIVVMFLAWVLVRAVGEAHTATDGSDRVEATNTSSRVARTLLVLMRRLRVPIVVLQVLTQYVSITGGDLPLSYTHFLNGVSIFSLDLRWLTSPGCAMNVNFYDRLLMATLSPLAIIALIFAGRLY 416 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6010.14541.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6010.14541.1 >prot_L-elsbetiae_contig6010.14541.1 ID=prot_L-elsbetiae_contig6010.14541.1|Name=mRNA_L-elsbetiae_contig6010.14541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=376bp IHLEGQVSRDWNGESTTLFTAEAPFQPEVEPARVTVNATFVYCTQGEYWDback to top mRNA from alignment at L-elsbetiae_contig6010:889..10613- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6010.14541.1 ID=mRNA_L-elsbetiae_contig6010.14541.1|Name=mRNA_L-elsbetiae_contig6010.14541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=9725bp|location=Sequence derived from alignment at L-elsbetiae_contig6010:889..10613- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6010:889..10613- >mRNA_L-elsbetiae_contig6010.14541.1 ID=mRNA_L-elsbetiae_contig6010.14541.1|Name=mRNA_L-elsbetiae_contig6010.14541.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2256bp|location=Sequence derived from alignment at L-elsbetiae_contig6010:889..10613- (Laminarionema elsbetiae ELsaHSoW15)back to top |