prot_L-elsbetiae_contig6009.14537.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig6009.14537.1
Unique Nameprot_L-elsbetiae_contig6009.14537.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length149
Homology
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BLAST of mRNA_L-elsbetiae_contig6009.14537.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 5.090e-45
Identity = 102/189 (53.97%), Postives = 113/189 (59.79%), Query Frame = 0 
Query:    2 AVFEDLWAKGLCAVSGSNYGADYVVYNGPPTERHSVAAVIVGRGSNDELSPAEVSGFARVQQAVGKRSVIATPPRATEDS--MSTPTGMGEAAAVALAS---PRIVEAGTTGVIGQAPLVAGHQGAPAT-----------------PAA---------------------PTDEGVRYITLQFHSVSYR 147
            AVFEDLWAKGLC  SGSNY AD+VVYNGPPTERHS+AAVIV RG+NDELSPAE+SGFARVQQAVGKR+VIAT P AT D+  M        +AAVA A+   PR  E   TGV G+      H+G   T                 PAA                     P +EGVRYITLQFHSVS R
Sbjct:  155 AVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPLATNDTSPMVVEANTLASAAVATAAVVAPRGSEGKPTGVEGRTSTPRRHEGGQETASGTVLGTASEKLPTQAPAAANAVAXXXXXXXXXXXXXXXTPANEGVRYITLQFHSVSSR 343
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BLAST of mRNA_L-elsbetiae_contig6009.14537.1 vs. uniprot
Match: A0A6V7V8G2_9BILA (tRNA-intron lyase n=1 Tax=Meloidogyne enterolobii TaxID=390850 RepID=A0A6V7V8G2_9BILA)

HSP 1 Score: 53.1 bits (126), Expect = 1.960e-5
Identity = 27/72 (37.50%), Postives = 40/72 (55.56%), Query Frame = 0 
Query:    1 MAVFEDLWAKGLCAVSGSNYGADYVVYNGPPTERHSVAAVIVGRGSNDELSPAEVSGFARVQQAVGKRSVIA 72
            + VF DLW KG   +SG+ +G DY+ Y  PP E+HS+  VI     N  L+   +   +RV   V K+ ++A
Sbjct:  180 LTVFRDLWRKGFYLLSGAKFGCDYLAYEKPPGEQHSLFMVICS-DVNKSLNLYNLIATSRVSTQVKKKILLA 250
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6009.14537.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE5.090e-4553.97tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
A0A6V7V8G2_9BILA1.960e-537.50tRNA-intron lyase n=1 Tax=Meloidogyne enterolobii ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 2..74
e-value: 2.4E-12
score: 46.8
IPR011856tRNA endonuclease-like domain superfamilyGENE3D3.40.1350.10coord: 1..84
e-value: 3.1E-14
score: 54.8
IPR036167tRNA intron endonuclease, catalytic domain-like superfamilySUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 2..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6009contigL-elsbetiae_contig6009:6650..7377 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6009.14537.1mRNA_L-elsbetiae_contig6009.14537.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig6009 5377..7590 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig6009.14537.1 ID=prot_L-elsbetiae_contig6009.14537.1|Name=mRNA_L-elsbetiae_contig6009.14537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MAVFEDLWAKGLCAVSGSNYGADYVVYNGPPTERHSVAAVIVGRGSNDEL
SPAEVSGFARVQQAVGKRSVIATPPRATEDSMSTPTGMGEAAAVALASPR
IVEAGTTGVIGQAPLVAGHQGAPATPAAPTDEGVRYITLQFHSVSYRA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006677tRNA_intron_Endonuc_cat-like
IPR011856tRNA_endonuc-like_dom_sf
IPR036167tRNA_intron_Endo_cat-like_sf