mRNA_L-elsbetiae_contig6003.14532.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6003.14532.1
Unique NamemRNA_L-elsbetiae_contig6003.14532.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: D8LMU2_ECTSI (Ribosomal protein L11 methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU2_ECTSI)

HSP 1 Score: 473 bits (1217), Expect = 1.320e-160
Identity = 246/353 (69.69%), Postives = 278/353 (78.75%), Query Frame = 3 
Query:  342 GVGSLRCCSQAATASTPDQQPYKVVTAWRYEGSVVPVPWRALGDFLFEMGACACSVSV--EKEERQQGTAVGGEASAREAAXXXXXXXXXXXTEEGQDNREAMLTLIVAEGGGWGRVGAALETACELAGGPDGCFESLDWEEGPLECADNWEATRSSEGFDTIAMRRLQISPVQR-DDEAPSP-SVRQVKLLEGRGWGDGEHPSTWMCLDFLETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGVGDKVSALHGREVSIGDLSAEVVIANLMAGPMRRQMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDWEASLEATRNSSTWGEF 1388
            GVG+LRC SQ   +ST DQQ Y VVT WRYEGS V VPWR+LGD LFEMGAC CSV V  E+EE ++G    G    RE             TE  Q  R AMLT  + EGGG G VGA LE AC LAGGPD CF SLDWEEGP EC D WEATRSSEGFDT+ MRRLQIS VQR +++ PS   +R VKLLEG+GWGDGEHPSTWMCLDFLE+A+ GGEEVVDYGTGSGVLAAAAV+LGA+HV A+DID E+L HARQNFLLNG+ +KV  LHGREVSIGDLSAE+V+AN++AGPMRRQMAALVLAV+EGGLLCLSGLRPSD P+I+S+FGKYMDW+  LEA+R S TWGE+
Sbjct:  148 GVGALRCSSQEVLSSTVDQQAYTVVTTWRYEGSAVDVPWRSLGDMLFEMGACWCSVYVGEEEEEXEEGLERQGH---REQ--------WPGETEAVQWGRGAMLTFALEEGGG-GDVGAVLEAACALAGGPDDCFGSLDWEEGPAECFDQWEATRSSEGFDTVTMRRLQISAVQRREEQVPSSRGLRSVKLLEGQGWGDGEHPSTWMCLDFLESAVEGGEEVVDYGTGSGVLAAAAVVLGAKHVTAIDIDVEILAHARQNFLLNGISEKVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRSEFGKYMDWDVGLEASRESPTWGEY 488
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: A0A6H5JRK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRK0_9PHAE)

HSP 1 Score: 236 bits (601), Expect = 1.060e-69
Identity = 132/227 (58.15%), Postives = 146/227 (64.32%), Query Frame = 3 
Query:  342 GVGSLRCCSQAATASTPDQQ-----------PYKVVTAWRYEGSVVPVPWRALGDFLFEMGACACSVSVEKEERQQGTAVGGEASAREAAXXXXXXXXXXXTEEGQDNREAMLTLIVAEGGGWGRVGAALETACELAGGPDGCFESLDWEEGPLECADNWEATRSSEGFDTIAMRRLQISPVQR-DDEAPSP-SVRQVKLLEGRGWGDGEHPSTWMCLDFLETAITG 983
            GV +LRC SQ   +ST D Q           PY VVTAWRYEGS V VPWR+LGD LFEMGAC CSV V +EE  +G    G                    E  Q  R AMLT  + EG G G VGA LE AC LAGG D CF SLDWEEGP+EC   WEATRSSEGFDT+ MRRLQIS VQR + +  SP  +R VKLLEG+GWGDGEHPSTWMCLDFLE+A+ G
Sbjct:  108 GVVALRCSSQKVLSSTVDTQVGGENSYLYPAPYTVVTAWRYEGSAVDVPWRSLGDMLFEMGACWCSVYVGEEEEDEGLERQGHRDQ-----------GPGEAEAVQWGRGAMLTFALEEGRG-GDVGAVLEAACSLAGGSDDCFGSLDWEEGPVECFHQWEATRSSEGFDTVTMRRLQISAVQRREKQVASPRGLRSVKLLEGQGWGDGEHPSTWMCLDFLESAVEG 322
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: W7TLY7_9STRA (Ribosomal protein l11 methyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLY7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.650e-38
Identity = 91/219 (41.55%), Postives = 120/219 (54.79%), Query Frame = 3 
Query:  744 SLDWEEGPLECADNWEATRSSEGFDTIAMRRLQISPVQ---------RDDEAPSPSVR---QVKLLEGRGWGDGEHPSTWMCLDFL--ETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGVGDKVSALHGREVSIGDLSAEVVIANL-MAGPMRRQMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDWEASLE 1355
            S  +EE  +  A NW+     EGF  + + R Q+ PVQ         +D   PS   R   QV++L G GWGDG HP+T +CLDFL  E  + GGE VVDYG GSG+L+ AAV LGA   V +D+ ++ L  A  N  LNGV  +V  LH REV  GD           + G +      ++ AVREGG L LSGLRP    +I+  +G ++ W+ SLE
Sbjct:  165 SWSYEEERVLNAVNWQKAAIQEGFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQEVELLHPREVVPGDXXXXXXXXXXXLVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLE 383
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: A0A7S2R9D2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R9D2_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.290e-35
Identity = 77/161 (47.83%), Postives = 102/161 (63.35%), Query Frame = 3 
Query:  915 GWGDGEHPSTWMCLDFLETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGVGDKVSALHGREVSIGDL--SAEVVIANLMAGPMRR--QMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDWEASLEATRNSSTWGE 1385
            GWG G HPST +CL+FL   +  G+ V+DYGTGSGVLA AA  LGA  V+ VDID EVL+ A  N  LNG GD+   LH REV +  L   AEV++AN++ G + R   +AAL   + +GGLLCLSG+RP + P +Q  +  +++WE +L         GE
Sbjct:   35 GWGTGCHPSTALCLEFLSHHLEPGQVVMDYGTGSGVLAIAACGLGASKVIGVDIDAEVLVTAGHNLDLNGWGDRAELLHVREVQVEGLVPKAEVILANILVGQLIRPSMVAALCTNLADGGLLCLSGVRPEEVPTLQRAYDGWVEWEDTLYKEARPGPHGE 195
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: A0A0G4EHK7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EHK7_VITBC)

HSP 1 Score: 135 bits (339), Expect = 4.330e-32
Identity = 75/186 (40.32%), Postives = 106/186 (56.99%), Query Frame = 3 
Query:  867 EAPSPSV--------RQVKLLEGRGWGDGEHPSTWMCLDFLETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGVGDKVSALHGREVSIGDLSA----EVVIANLMAGPMRRQMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDWEASLEATRNSSTWGEF 1388
            EAPS  V        + + L    GWG G HPST +C++FLE  +  G+ V+DYG GS +L+ AA  LGA HV+ VDID ++L +AR+N  LNGV   V  +H REV  GD +     +  +AN++ GP++R   AL  AVR  G LCLSG+RPS    +   +  + D++     T     +GE+
Sbjct:  135 EAPSSDVPVPLGGQLQDIHLRLHDGWGTGAHPSTRLCMEFLERRVRRGDAVLDYGVGSAILSVAAAKLGASHVLGVDIDDDILTNARENCRLNGVDGCVELMHTREVVTGDTAISGRFDGCVANILVGPLKRLAPALGDAVRADGWLCLSGVRPSQVDDVMQAYNVFYDFDHKAVRTGVHDVYGEW 320
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: A0A7S3RWI1_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RWI1_EMIHU)

HSP 1 Score: 133 bits (335), Expect = 4.700e-32
Identity = 76/176 (43.18%), Postives = 105/176 (59.66%), Query Frame = 3 
Query:  870 APSPSVRQVKLLEGRGWGDGEHPSTWMCLDFLETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGVGDKVSALHGREVSIGDL--SAEVVIANLMAGPMRR--QMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDWEASLEATRNSSTWGE 1385
            +PSPS R         WG G HP+T +CL++L  AI GGE V+D+G GSGVLAA A+ LGA    AVD+D E L+ A  N  LNGV  +   LH REV  G L   A+VV+AN++ G + R   + +L   +  GGLLCLSG+RP +   ++  +G +++WE  + A  +    GE
Sbjct:   96 SPSPSAR---------WGTGCHPTTRLCLEWLSDAIQGGEHVLDFGCGSGVLAAGALALGASKATAVDVDAEALVVAAANLELNGVEQRAELLHVREVVPGGLVPPADVVVANILVGQLVRPSMVCSLCANLAPGGLLCLSGVRPHEIGSLKEAYGTWVEWEDWMYAEADPGVGGE 262
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: A0A7S3RWB4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RWB4_EMIHU)

HSP 1 Score: 133 bits (335), Expect = 4.310e-31
Identity = 76/176 (43.18%), Postives = 105/176 (59.66%), Query Frame = 3 
Query:  870 APSPSVRQVKLLEGRGWGDGEHPSTWMCLDFLETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGVGDKVSALHGREVSIGDL--SAEVVIANLMAGPMRR--QMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDWEASLEATRNSSTWGE 1385
            +PSPS R         WG G HP+T +CL++L  AI GGE V+D+G GSGVLAA A+ LGA    AVD+D E L+ A  N  LNGV  +   LH REV  G L   A+VV+AN++ G + R   + +L   +  GGLLCLSG+RP +   ++  +G +++WE  + A  +    GE
Sbjct:  206 SPSPSAR---------WGTGCHPTTRLCLEWLSDAIQGGEHVLDFGCGSGVLAAGALALGASKATAVDVDAEALVVAAANLELNGVEQRAELLHVREVVPGGLVPPADVVVANILVGQLVRPSMVCSLCANLAPGGLLCLSGVRPHEIGSLKEAYGTWVEWEDWMYAEADPGVGGE 372
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: A0A1Z5J7T9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7T9_FISSO)

HSP 1 Score: 124 bits (311), Expect = 1.960e-28
Identity = 83/214 (38.79%), Postives = 121/214 (56.54%), Query Frame = 3 
Query:  792 ATRSSEGFDTIAMRRLQISPVQ---RDDEAPSPS----VRQVKLLEGR-GWGDGEHPSTWMCLDFLETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGV-GDKVSALHGREVSIGDL----SAEVVIANLMAGPMRR--QMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDW------EASLEATRNS 1370
            AT++ EG DT+    L I  V+    + E P       +R + LL GR GWG G HP+T +CL++L   I GGE V+DYG GSG+L+ AA+ +GA   V VDI+ E LI A +N  LN     +   LH RE+   ++      +V IAN++ G + R   +AALV  +R  G+LCLSG+RP +   +++ +G+ ++W      E S E T  S
Sbjct:   68 ATQAGEG-DTLPREGLVIGTVRVLAAEAEPPQQQENGLIRSIYLLMGRNGWGTGVHPTTRLCLEWLCEQIQGGEIVLDYGCGSGILSIAALHMGAARCVGVDIEAEALITAERNVALNEYDSSRFEGLHTREILPYEIVPGRGVDVCIANILIGQLVRPSMVAALVSNIRNNGILCLSGIRPHEVASLKAAYGESIEWIDDHYAELSAEETEGS 280
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: L1J7Q7_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J7Q7_GUITC)

HSP 1 Score: 119 bits (297), Expect = 2.510e-27
Identity = 64/154 (41.56%), Postives = 95/154 (61.69%), Query Frame = 3 
Query:  882 SVRQVKLLEGRGWGDGEHPSTWMCLDFLETAITGGEEVV--DYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGVGDKVS-ALHGREVSIGDLSAEVVIANLMAGPMRRQMAALVLAVREG-GLLCLSGLRPSDTPIIQSDFGKY 1331
            SV+ + L    GWGDG HPST +C++FL T ++ G E V  DYGTGSG+L  +A   G + V+ +DID E +  A QN + NG+ D+V  AL   E  +  L  ++V+AN++ GP+ +    L LAV+E  G LCLSG+R    P ++ ++ K+
Sbjct:   23 SVQDIYLAGDYGWGDGFHPSTRLCVEFLSTVLSHGSEKVMLDYGTGSGILGISACKFGCKSVIGIDIDDEAIEDAEQNIIRNGLSDQVIFALPLDEPWMNSLQFDIVVANILVGPLMKLAPVLSLAVKEETGKLCLSGIRNFQIPALEVEYAKF 176
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BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Match: PRMA_SHELP (Ribosomal protein L11 methyltransferase n=18 Tax=Shewanella TaxID=22 RepID=PRMA_SHELP)

HSP 1 Score: 119 bits (297), Expect = 1.100e-26
Identity = 75/204 (36.76%), Postives = 108/204 (52.94%), Query Frame = 3 
Query:  741 ESLDWEEGPLECADNWEATRSSEGFDTIAMRRLQISPVQRDDEAPSPSVRQVKLLEGRGWGDGEHPSTWMCLDFLETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDIDFEVLIHARQNFLLNGVGDKVSALHGREVSIGDLSAEVVIANLMAGPMRRQMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDWEASL 1352
            E  DWE    E  DN+   +          RRL I P  R  E P P    V L  G  +G G HP+T +CL++L+     G+E +D+G GSG+LA AA+ LGA  V  +DID++ +  ++ N   N V DK+  L+  E    DL AEV++AN++AGP+R     +   V+ GGLL LSGL       I   + ++ D +A +
Sbjct:   91 EDKDWER---EWMDNFHPIQFG--------RRLWICPSWR--EVPDPEAVNVMLDPGLAFGTGTHPTTALCLEWLDGLDLQGKEAIDFGCGSGILAVAALKLGAAKVTGIDIDYQAIDASKANAERNQVADKLD-LYLPEDQPADLKAEVLVANILAGPLRELAPLIAEKVQPGGLLALSGLLKEQADEISQHYAQWFDMDAPV 280
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6003.14532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMU2_ECTSI1.320e-16069.69Ribosomal protein L11 methyltransferase n=1 Tax=Ec... [more]
A0A6H5JRK0_9PHAE1.060e-6958.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TLY7_9STRA1.650e-3841.55Ribosomal protein l11 methyltransferase n=2 Tax=Mo... [more]
A0A7S2R9D2_9STRA1.290e-3547.83Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0G4EHK7_VITBC4.330e-3240.32Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3RWI1_EMIHU4.700e-3243.18Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A7S3RWB4_EMIHU4.310e-3143.18Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A1Z5J7T9_FISSO1.960e-2838.79Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
L1J7Q7_GUITC2.510e-2741.56Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
PRMA_SHELP1.100e-2636.76Ribosomal protein L11 methyltransferase n=18 Tax=S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6003contigL-elsbetiae_contig6003:6170..11399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score480.3
Seed ortholog evalue9.7e-133
Seed eggNOG ortholog2880.D8LMU2
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Ribosomal protein L11 methyltransferase (PrmA)
EggNOG OGs2S89S@2759,COG2264@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRibosomal L11 methyltransferase, PrmA
Ec32 orthologEc-02_003650.1
Exons8
Model size1388
Cds size1362
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.4636538-UTR-L-elsbetiae_contig6003:6169..61951622816654.4636538-UTR-L-elsbetiae_contig6003:6169..6195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6003 6170..6195 +
1691683715.6478093-UTR-L-elsbetiae_contig6003:6169..61951691683715.6478093-UTR-L-elsbetiae_contig6003:6169..6195Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6003 6170..6195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.4742577-CDS-L-elsbetiae_contig6003:6195..62341622816654.4742577-CDS-L-elsbetiae_contig6003:6195..6234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 6196..6234 +
1691683715.6602519-CDS-L-elsbetiae_contig6003:6195..62341691683715.6602519-CDS-L-elsbetiae_contig6003:6195..6234Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 6196..6234 +
1622816654.4872208-CDS-L-elsbetiae_contig6003:6620..69561622816654.4872208-CDS-L-elsbetiae_contig6003:6620..6956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 6621..6956 +
1691683715.6759048-CDS-L-elsbetiae_contig6003:6620..69561691683715.6759048-CDS-L-elsbetiae_contig6003:6620..6956Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 6621..6956 +
1622816654.4990284-CDS-L-elsbetiae_contig6003:7399..77391622816654.4990284-CDS-L-elsbetiae_contig6003:7399..7739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 7400..7739 +
1691683715.6894224-CDS-L-elsbetiae_contig6003:7399..77391691683715.6894224-CDS-L-elsbetiae_contig6003:7399..7739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 7400..7739 +
1622816654.5095975-CDS-L-elsbetiae_contig6003:8496..87361622816654.5095975-CDS-L-elsbetiae_contig6003:8496..8736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 8497..8736 +
1691683715.701897-CDS-L-elsbetiae_contig6003:8496..87361691683715.701897-CDS-L-elsbetiae_contig6003:8496..8736Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 8497..8736 +
1622816654.5236843-CDS-L-elsbetiae_contig6003:9258..93921622816654.5236843-CDS-L-elsbetiae_contig6003:9258..9392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 9259..9392 +
1691683715.7149394-CDS-L-elsbetiae_contig6003:9258..93921691683715.7149394-CDS-L-elsbetiae_contig6003:9258..9392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 9259..9392 +
1622816654.5343277-CDS-L-elsbetiae_contig6003:9882..99541622816654.5343277-CDS-L-elsbetiae_contig6003:9882..9954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 9883..9954 +
1691683715.725639-CDS-L-elsbetiae_contig6003:9882..99541691683715.725639-CDS-L-elsbetiae_contig6003:9882..9954Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 9883..9954 +
1622816654.5442636-CDS-L-elsbetiae_contig6003:10886..110141622816654.5442636-CDS-L-elsbetiae_contig6003:10886..11014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 10887..11014 +
1691683715.734667-CDS-L-elsbetiae_contig6003:10886..110141691683715.734667-CDS-L-elsbetiae_contig6003:10886..11014Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 10887..11014 +
1622816654.5541034-CDS-L-elsbetiae_contig6003:11326..113991622816654.5541034-CDS-L-elsbetiae_contig6003:11326..11399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 11327..11399 +
1691683715.7464511-CDS-L-elsbetiae_contig6003:11326..113991691683715.7464511-CDS-L-elsbetiae_contig6003:11326..11399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6003 11327..11399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6003.14532.1prot_L-elsbetiae_contig6003.14532.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6003 6196..11399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6003.14532.1

>prot_L-elsbetiae_contig6003.14532.1 ID=prot_L-elsbetiae_contig6003.14532.1|Name=mRNA_L-elsbetiae_contig6003.14532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=454bp
MVGGHKRARALIKASCSVTMLMLSSGARAFRFVPPPATGPSPSSRGTAPL
FTVASPATGRHQDRRCQRHDQHRRCFRRRRSTRASPEEGGSRVAVGAAAR
GRRSAGVGSLRCCSQAATASTPDQQPYKVVTAWRYEGSVVPVPWRALGDF
LFEMGACACSVSVEKEERQQGTAVGGEASAREAAVAASAAAAAEATEEGQ
DNREAMLTLIVAEGGGWGRVGAALETACELAGGPDGCFESLDWEEGPLEC
ADNWEATRSSEGFDTIAMRRLQISPVQRDDEAPSPSVRQVKLLEGRGWGD
GEHPSTWMCLDFLETAITGGEEVVDYGTGSGVLAAAAVLLGAEHVVAVDI
DFEVLIHARQNFLLNGVGDKVSALHGREVSIGDLSAEVVIANLMAGPMRR
QMAALVLAVREGGLLCLSGLRPSDTPIIQSDFGKYMDWEASLEATRNSST
WGEF
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mRNA from alignment at L-elsbetiae_contig6003:6170..11399+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6003.14532.1 ID=mRNA_L-elsbetiae_contig6003.14532.1|Name=mRNA_L-elsbetiae_contig6003.14532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5230bp|location=Sequence derived from alignment at L-elsbetiae_contig6003:6170..11399+ (Laminarionema elsbetiae ELsaHSoW15)
GTTACTGCTGCAGGCTGGCATCGACCATGGTGGGCGGCCACAAACGAGCC
CGTGCTTTGATCAAAGTGAGCTGCGTGTCTTTATTTACCCCTCTCTGCCA
CCTGTTGCGGTGTTGTTTGTTAGTTACAGCAAAGCTACAAGATAAGATGG
CTTCCTGTAACGTTCAAGTGCTGCAGGAGAGCTCGCTGACATGCGATTGA
ATCTCATAGATCACACCCTGCCGGCCCCAACGAACAAGAACTCTCCATTC
ATCGTTCTACCGATCTCCATGCGCTGCCACTTTTGCGCATTTTGCCGGTC
ACATATATTCCAACTGCCACGGGTTTCCCAACCGAGCTTGCCCGATCCTA
TCCCACCCCCGCCAGCCCCTCTCTTGCGCACGCACACACACACCCCAGCT
GCATACGTACTCGCCACGACGATGCAACTAACCCCACACTACTTTCCGCA
GGCGTCGTGCTCCGTGACGATGCTGATGCTTTCGAGCGGCGCGAGGGCTT
TCCGCTTCGTCCCGCCCCCGGCGACGGGGCCTTCACCCTCGTCCCGTGGA
ACCGCGCCGTTGTTTACGGTTGCGTCGCCTGCGACGGGGCGACATCAAGA
CCGACGCTGTCAGCGTCACGATCAACATCGGCGATGCTTTCGACGTCGAA
GATCCACACGAGCCAGCCCCGAGGAGGGCGGCAGCCGCGTTGCTGTGGGC
GCAGCTGCGCGCGGACGAAGGAGCGCGGGCGTTGGGTCTCTGCGATGCTG
CTCCCAGGCGGCTACCGCTTCTACTCCGGATCAGCAGGTGATCTGCCGCA
CAAGGGTGGGGTGTGCTGCGCGCCGCACTGCGGGTCGTTTTTTTCGGCTG
CCCCGCCGCCGATACTGAGCGCTTTGAGGGTTCGCTTTCGAAGGGGGCTC
TGAACTGTCGGCAGCGGTGCCTCGAGAGTGGAAAGGGGACTGGGGAGTGT
CGAGTGTGTCTCGTCTCAATGTGTTTCGCGCGTTAGATGACGGAAGTGGG
CCGCCTAACGGAACTAAAATAAGCGTAAAGCAGAAGAGGGGTAGCGCCAT
TGGTGGCGCCATACAGCTCACCACTGGAACAAAGAACAGAGCGACTGGCA
TCTACCTTCTGTCACGCGGCAAAAGGTCAGGCAAGGGGTATGCCCGCCCC
CGCCAGAACCACGCCCTCCCCCCACACCGACACCACCGCGCGTGCACATC
TGTCTGCGCCCCCCCGTGCCTCGCTGGAAGCCTTACAAGGTGGTGACCGC
GTGGCGGTACGAAGGCTCAGTCGTCCCCGTGCCGTGGAGGGCCTTGGGGG
ACTTTCTGTTCGAGATGGGGGCCTGCGCGTGCTCGGTGTCCGTCGAGAAA
GAAGAGAGACAACAAGGGACAGCAGTGGGTGGAGAAGCATCAGCACGAGA
GGCGGCAGTAGCAGCATCAGCGGCGGCGGCGGCGGAGGCCACGGAAGAGG
GGCAAGATAACCGAGAAGCGATGCTCACGCTCATCGTGGCGGAGGGGGGC
GGCTGGGGACGTGTTGGTGCTGCGCTCGAGACGGCCTGCGAGCTGGCCGG
CGGTCCAGACGGCTGCTTCGGTAAGGCCGACGACCGATGACCGGCGTGGT
GTCGGCTGGTTTTGGCATGGCCTTTGACTGCTGCGTTTGTCGAGCGGGCT
CGGGACGCTGCCCTGCTTCAGCGCGGACAAGGGAGTCAAATGCCCCGCGA
ACGAGCCACTTTTTTGAGAGAACGAAAGCAACACGGCAGTAGTGTATGAA
AGGCAATGTTTTTACTCCCCAAGTTTACTAGCTTGCGCTTTCATGCTCAT
TACAACTGCGTACAACCGCTGCTAGTGCAGCCACCACTTTTTTCACCGCA
GTTTTTTCGCCGTGTTTTTTCGCCCGGATCAGAGCCTCTTTTAAGCCAGG
AGATGTTTTTCCGCGCTATTTAAACTCATCGCTTCTTTCCAACCGCGCGT
GGGCGATTCTCAGCCTGCAGTGGCGGCTGATCTGGCGCCTTTTTCTCGGC
CATTTGGTTAAATACGTAAGAATGTATTCTTCCCCTCTCTCCCCTGCCTA
GAAACAAAAACTGGCGACGTTGCAAACGTTTTGTTCGAAACGACTCTATT
TCTTGCATACGCGACGAAAAAAAAAAAAAAAAAAAGAGACCCGGGAGCGG
GGGGGAGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGCCCAAAGAAANN
NNNNNNNNAAAAGAGATTCTTCACCAACCCCCCCTTAATAAAAACAAAAA
CGGACAAAGTAAAAAACGTTTTATTAAAAAAAAAAATAATTTTTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAGAGTCCTTGGACTGGGAAGAAGGG
CCGTTGGAGTGCGCCGACAACTGGGAGGCCACGCGGTCGAGCGAAGGTTT
CGACACCATCGCCATGCGAAGGCTGCAGATATCGCCCGTGCAGCGAGATG
ACGAGGCGCCGAGCCCGAGTGTCCGGCAGGTGAAGCTCCTGGAGGGAAGG
GGCTGGGGAGACGGAGAGCACCCCAGCACGTGGATGTGCCTAGACTTTCT
GGAGACCGCAATAACCGGTAAATTGGTGGGGGGGGGGGGGGGGGGGGGGG
GGGAAGAGGGGGGAGTAACATATTTTTTTGTTTCTGGGTGTGGGGGCTCG
GAGNNNNNNNNNTGGGGGGGGGGGGGGCGCGGCCGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGTGGGGGAATGATGCGGAAGTATCATATTTTTTTGTTTCTAG
TTACTGGTCCTCTGAGTACGTGCGCGCCGATGAAACAGGGGCGTGAGTGT
GGGGAAAGGGTGAGACACAAGACAGCAAGCGGTACTTGTAGTGGCGAGTG
TAGATCGCTCGCTTGTGTTTTTTTAATTCTTTCTGCCCAAATGTTGTCGA
AATCGAGTCGCCAGGATTGATTCTCGAGTAAATCATCAGCCCGCGCAGGC
ACCCAAGCTGCCACAACCCTATTCTAAACAGCAATTCGTCCGGAAATAGG
CTCTTCCCCGGACTGCTGCTTTGTACTATTCGGCCGCAGGTGGAGAAGAG
GTGGTCGACTACGGCACCGGTTCGGGGGTGCTCGCGGCAGCGGCGGTGTT
GCTGGGGGCGGAGCATGTGGTCGCAGTTGACATCGACTTCGAGGTCCTCA
TCCATGCCCGGCAGAACTTTCTGGTGAGTTGATGACCAAAAACCAGAGTT
GGTTTTGGGGGTTTTGTTGTCGCGCCTCTCTTTGTGTGATGCATTTTCTC
GGTGTGTGGGTGCCCCTTTGGCGGTGCTTCTGTTCGCCTCTACCCGGCTG
TTTCGACTCGTCATGCAGAAAGGGGAACGCACCCGATGCGGCGAGCAACA
GGCCTAATCCACAAGTTTCCGAAATGTTTTCGCCTGCGGTACGTACTACA
GCTGTTGTAGCGTATGGCGTCTATTTATGTTTCTATTTGTTTTCACATTT
ATTTCCAGCGCTCGGCGGGCTCCTTGCCACGAGGGCATCTTGCCAGAGTA
CTGAACCGTGGTCGCACGAAGTGTGAGGTAGGTTCCATCTTTGATTCATT
GTTTTTTTTAAAACGTACATACTTATGTATATGTACCAGAGATGATCGTC
TTCCCTCCCACGCGCCTCTTGACTTTCCAATGTGGTGTTATCGCCGGTGC
GCGCCTTCGGCAGCTCAACGGCGTCGGCGATAAAGTATCGGCCCTACACG
GCCGCGAGGTTTCGATAGGCGACCTATCGGCGGAGGTGAGACATTCACAT
TGCGGTCGTAGTCGCGGTGTTTTGTGTGCAGGGGAAACGGGGTTAGACAG
CAGTGAGTGAGACGGGCGGGGTATGCGTTGCAGAGTGAAGCTGTGCGTGA
TTCGCGTGAGCTCAATCAGCATCAGAGCACCGACTCTGTTGAAGGAGTTG
CTGGCTTTGTTGTCGTGCTGTCACGGCGTTTCGTGTGGGTGGAGTCGTGT
GCCCTTGTACAATTGCGGGGGCGGGCGATTGGACGCACAGCTTGCACGGC
GCAAACGGCTCATGTATGCGTTTTCCCGCTACATATTCAGTTGAGTCTTC
CTTGAATGGCGGCTACTCATCGATCGAAAGGACTTGCTGAGAGGCCTCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCTCTCT
CTCTCTCTCTCTCTCCCTCCCTCTCCCTCTCCCTCTGTATCTCTTTCTTC
CTCTCCCTCTCCCTCTCCCTCTTTCTCGCTTCTGTGCTTGTTTTGGCTAA
CACTCTGCCGCAGCCAACGCTCAGCAACAATTAACACCAAGGCTAATCTC
GTCCTTGCAGCCCGCCCAGTAGTGCGATCGAACCTCCCTCTCTCTTATCT
CTCTCTCTCTTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CCCTCCCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCATCT
CTCTCACTTCTGTGCTTGTTTTGGCTAACACTCTGCCGCAGCCAAAGCTC
AGCAACAAAAATACCCAGGCTGATCTCGTCCTTGCCGCCCGTCCAGTAGT
GCGATCGAACCTCCACCGGGCGCGCCTGCCTGCCTGCCTGCCTTTGCTCC
GCCCGAAACGAAACCAGGTGGTGATAGCAAACTTGATGGCCGGCCCGATG
CGGCGCCAGATGGCCGCTCTCGTGCTCGCCGTCAGGGAGGGGGGCCTGCT
GTGCCTCTCGGGGCTGAGGCCCTCAGACACGCCAATCATCCAGAGGTGCG
CGTTTGGTGGTGTTCGCCCGCTCACTGCGTGCGGTGGTTATCTCGTTTCT
TCTCGGTGGCATTAGCACGGTTGGCTTGGGAATCAAAGCTCTTGGGAGAA
AACTCTTCGGTACGTATTAGTTGGGGGGTGGACTTAGTGCAACGTACCGG
GCTCGTTCCACGTCAGTTCACCCAGAGCATGACGTCGGTGTATAAATACC
TCGCGACCGCCGTTAACGATCCCCGATGTTGCTCTCGTCGTCATTTCGTC
TCTTGCCTTGTCCTCTGATGGCTGGATTTCGGACGACGTTGTGTATTGCG
GGCGCAGCGACTTCGGCAAGTACATGGATTGGGAAGCTAGTCTGGAGGCG
ACCCGGAACAGTTCCACCTGGGGTGAGTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6003:6170..11399+

>mRNA_L-elsbetiae_contig6003.14532.1 ID=mRNA_L-elsbetiae_contig6003.14532.1|Name=mRNA_L-elsbetiae_contig6003.14532.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2724bp|location=Sequence derived from alignment at L-elsbetiae_contig6003:6170..11399+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGGGCGGCCACAAACGAGCCCGTGCTTTGATCAAAATGGTGGGCGG
CCACAAACGAGCCCGTGCTTTGATCAAAGCGTCGTGCTCCGTGACGATGC
TGATGCTTTCGAGCGGCGCGAGGGCTTTCCGCTTCGTCCCGCCCCCGGCG
ACGGGGCCTTCACCCTCGTCCCGTGGAACCGCGCCGTTGTTTACGGTTGC
GTCGCCTGCGACGGGGCGACATCAAGACCGACGCTGTCAGCGTCACGATC
AACATCGGCGATGCTTTCGACGTCGAAGATCCACACGAGCCAGCCCCGAG
GAGGGCGGCAGCCGCGTTGCTGTGGGCGCAGCTGCGCGCGGACGAAGGAG
CGCGGGCGTTGGGTCTCTGCGATGCTGCTCCCAGGCGGCTACCGCTTCTA
CTCCGGATCAGCAGGCGTCGTGCTCCGTGACGATGCTGATGCTTTCGAGC
GGCGCGAGGGCTTTCCGCTTCGTCCCGCCCCCGGCGACGGGGCCTTCACC
CTCGTCCCGTGGAACCGCGCCGTTGTTTACGGTTGCGTCGCCTGCGACGG
GGCGACATCAAGACCGACGCTGTCAGCGTCACGATCAACATCGGCGATGC
TTTCGACGTCGAAGATCCACACGAGCCAGCCCCGAGGAGGGCGGCAGCCG
CGTTGCTGTGGGCGCAGCTGCGCGCGGACGAAGGAGCGCGGGCGTTGGGT
CTCTGCGATGCTGCTCCCAGGCGGCTACCGCTTCTACTCCGGATCAGCAG
CCTTACAAGGTGGTGACCGCGTGGCGGTACGAAGGCTCAGTCGTCCCCGT
GCCGTGGAGGGCCTTGGGGGACTTTCTGTTCGAGATGGGGGCCTGCGCGT
GCTCGGTGTCCGTCGAGAAAGAAGAGAGACAACAAGGGACAGCAGTGGGT
GGAGAAGCATCAGCACGAGAGGCGGCAGTAGCAGCATCAGCGGCGGCGGC
GGCGGAGGCCACGGAAGAGGGGCAAGATAACCGAGAAGCGATGCTCACGC
TCATCGTGGCGGAGGGGGGCGGCTGGGGACGTGTTGGTGCTGCGCTCGAG
ACGGCCTGCGAGCTGGCCGGCGGTCCAGACGGCTGCTTCGCCTTACAAGG
TGGTGACCGCGTGGCGGTACGAAGGCTCAGTCGTCCCCGTGCCGTGGAGG
GCCTTGGGGGACTTTCTGTTCGAGATGGGGGCCTGCGCGTGCTCGGTGTC
CGTCGAGAAAGAAGAGAGACAACAAGGGACAGCAGTGGGTGGAGAAGCAT
CAGCACGAGAGGCGGCAGTAGCAGCATCAGCGGCGGCGGCGGCGGAGGCC
ACGGAAGAGGGGCAAGATAACCGAGAAGCGATGCTCACGCTCATCGTGGC
GGAGGGGGGCGGCTGGGGACGTGTTGGTGCTGCGCTCGAGACGGCCTGCG
AGCTGGCCGGCGGTCCAGACGGCTGCTTCGAGTCCTTGGACTGGGAAGAA
GGGCCGTTGGAGTGCGCCGACAACTGGGAGGCCACGCGGTCGAGCGAAGG
TTTCGACACCATCGCCATGCGAAGGCTGCAGATATCGCCCGTGCAGCGAG
ATGACGAGGCGCCGAGCCCGAGTGTCCGGCAGGTGAAGCTCCTGGAGGGA
AGGGGCTGGGGAGACGGAGAGCACCCCAGCACGTGGATGTGCCTAGACTT
TCTGGAGACCGCAATAACCGAGTCCTTGGACTGGGAAGAAGGGCCGTTGG
AGTGCGCCGACAACTGGGAGGCCACGCGGTCGAGCGAAGGTTTCGACACC
ATCGCCATGCGAAGGCTGCAGATATCGCCCGTGCAGCGAGATGACGAGGC
GCCGAGCCCGAGTGTCCGGCAGGTGAAGCTCCTGGAGGGAAGGGGCTGGG
GAGACGGAGAGCACCCCAGCACGTGGATGTGCCTAGACTTTCTGGAGACC
GCAATAACCGGTGGAGAAGAGGTGGTCGACTACGGCACCGGTTCGGGGGT
GCTCGCGGCAGCGGCGGTGTTGCTGGGGGCGGAGCATGTGGTCGCAGTTG
ACATCGACTTCGAGGTCCTCATCCATGCCCGGCAGAACTTTCTGGTGGAG
AAGAGGTGGTCGACTACGGCACCGGTTCGGGGGTGCTCGCGGCAGCGGCG
GTGTTGCTGGGGGCGGAGCATGTGGTCGCAGTTGACATCGACTTCGAGGT
CCTCATCCATGCCCGGCAGAACTTTCTGCTCAACGGCGTCGGCGATAAAG
TATCGGCCCTACACGGCCGCGAGGTTTCGATAGGCGACCTATCGGCGGAG
CTCAACGGCGTCGGCGATAAAGTATCGGCCCTACACGGCCGCGAGGTTTC
GATAGGCGACCTATCGGCGGAGGTGGTGATAGCAAACTTGATGGCCGGCC
CGATGCGGCGCCAGATGGCCGCTCTCGTGCTCGCCGTCAGGGAGGGGGGC
CTGCTGTGCCTCTCGGGGCTGAGGCCCTCAGACACGCCAATCATCCAGAG
GTGGTGATAGCAAACTTGATGGCCGGCCCGATGCGGCGCCAGATGGCCGC
TCTCGTGCTCGCCGTCAGGGAGGGGGGCCTGCTGTGCCTCTCGGGGCTGA
GGCCCTCAGACACGCCAATCATCCAGAGCGACTTCGGCAAGTACATGGAT
TGGGAAGCTAGTCTGGAGGCGACCCGGAACAGTTCCACCTGGGGTGAGTT
TCGACTTCGGCAAGTACATGGATTGGGAAGCTAGTCTGGAGGCGACCCGG
AACAGTTCCACCTGGGGTGAGTTT
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