mRNA_L-elsbetiae_contig6001.14528.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6001.14528.1
Unique NamemRNA_L-elsbetiae_contig6001.14528.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6001.14528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6001contigL-elsbetiae_contig6001:9772..10392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size372
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.0074077-UTR-L-elsbetiae_contig6001:9771..100201622816654.0074077-UTR-L-elsbetiae_contig6001:9771..10020Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6001 9772..10020 +
1691683715.327243-UTR-L-elsbetiae_contig6001:9771..100201691683715.327243-UTR-L-elsbetiae_contig6001:9771..10020Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6001 9772..10020 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.0213215-CDS-L-elsbetiae_contig6001:10020..103921622816654.0213215-CDS-L-elsbetiae_contig6001:10020..10392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6001 10021..10392 +
1691683715.3446856-CDS-L-elsbetiae_contig6001:10020..103921691683715.3446856-CDS-L-elsbetiae_contig6001:10020..10392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6001 10021..10392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6001.14528.1prot_L-elsbetiae_contig6001.14528.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6001 10021..10392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6001.14528.1

>prot_L-elsbetiae_contig6001.14528.1 ID=prot_L-elsbetiae_contig6001.14528.1|Name=mRNA_L-elsbetiae_contig6001.14528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MICILIAQQQSTLPRKERHTHRETPSPPSGLPTWYIQALPALMINGDSVE
SDARSPASVSPNQRCPLASARCGNSASPFFHARRWPHPRREVSVIPSLGC
SAQNSGFELSHGPKIGALVQPGWP
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mRNA from alignment at L-elsbetiae_contig6001:9772..10392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6001.14528.1 ID=mRNA_L-elsbetiae_contig6001.14528.1|Name=mRNA_L-elsbetiae_contig6001.14528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=621bp|location=Sequence derived from alignment at L-elsbetiae_contig6001:9772..10392+ (Laminarionema elsbetiae ELsaHSoW15)
GACATCCCATGCAATTCTCATGAGCACCTTCTCAAACGCCAGGCAGCCTA
CGTTCTCTACTCCGGCGAAAAGAGCTGGCAAAGGACAATCGGAACAAGGC
ACGCAACCAGACAAAAGAAAAAAAGTGAAGAATGCTGAAATATATAACCA
TAATGTATCTAAGCATACCAAACCTGCTCGCAAGATGCCACCGTACGGAC
CGAAGCTGCACAGGGAACGACATACCTCCGCTTGACGGAAGAAATCGCCA
TGATCTGTATTCTGATAGCACAACAACAGAGTACGCTACCCAGAAAAGAA
AGACACACACACAGGGAAACGCCATCCCCGCCATCCGGTCTACCAACATG
GTACATCCAGGCGCTTCCTGCCCTCATGATCAATGGAGATTCAGTAGAAT
CTGACGCCCGTTCGCCTGCCTCTGTGTCCCCGAATCAGCGCTGTCCGCTA
GCATCCGCTCGGTGCGGTAATTCGGCGTCGCCCTTCTTCCACGCCCGCCG
CTGGCCCCACCCTCGCAGGGAAGTAAGCGTCATCCCCTCCTTGGGGTGCT
CGGCGCAGAACTCGGGCTTTGAGCTCTCCCACGGCCCGAAGATCGGGGCA
TTGGTGCAGCCTGGGTGGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6001:9772..10392+

>mRNA_L-elsbetiae_contig6001.14528.1 ID=mRNA_L-elsbetiae_contig6001.14528.1|Name=mRNA_L-elsbetiae_contig6001.14528.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig6001:9772..10392+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCTGTATTCTGATAGCACAACAACAGAGTACGCTACCCAGAAAAGA
AAGACACACACACAGGGAAACGCCATCCCCGCCATCCGGTCTACCAACAT
GGTACATCCAGGCGCTTCCTGCCCTCATGATCAATGGAGATTCAGTAGAA
TCTGACGCCCGTTCGCCTGCCTCTGTGTCCCCGAATCAGCGCTGTCCGCT
AGCATCCGCTCGGTGCGGTAATTCGGCGTCGCCCTTCTTCCACGCCCGCC
GCTGGCCCCACCCTCGCAGGGAAGTAAGCGTCATCCCCTCCTTGGGGTGC
TCGGCGCAGAACTCGGGCTTTGAGCTCTCCCACGGCCCGAAGATCGGGGC
ATTGGTGCAGCCTGGGTGGCCGATGATCTGTATTCTGATAGCACAACAAC
AGAGTACGCTACCCAGAAAAGAAAGACACACACACAGGGAAACGCCATCC
CCGCCATCCGGTCTACCAACATGGTACATCCAGGCGCTTCCTGCCCTCAT
GATCAATGGAGATTCAGTAGAATCTGACGCCCGTTCGCCTGCCTCTGTGT
CCCCGAATCAGCGCTGTCCGCTAGCATCCGCTCGGTGCGGTAATTCGGCG
TCGCCCTTCTTCCACGCCCGCCGCTGGCCCCACCCTCGCAGGGAAGTAAG
CGTCATCCCCTCCTTGGGGTGCTCGGCGCAGAACTCGGGCTTTGAGCTCT
CCCACGGCCCGAAGATCGGGGCATTGGTGCAGCCTGGGTGGCCG
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