mRNA_L-elsbetiae_contig60.14522.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig60.14522.1 vs. uniprot
Match: D8LMT0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMT0_ECTSI) HSP 1 Score: 414 bits (1063), Expect = 6.870e-128 Identity = 374/900 (41.56%), Postives = 422/900 (46.89%), Query Frame = 1 Query: 40 MSHTEAFGHLRSFVVGLEIKARDLRTVLESSRDNDGKWINGKDGTGIGERCARAIGAASPEQVTKDMIAEVAEQDKLIRQVEESMRTEHPIQEATEKYQALMEYNQLALEDLEERLSAYGYVRPARVSLGEKKA---ADPPAASSVARLPARTKQDGGSGXXXXXXXXXXXSDGAQPDPPAGCRE---GREAIAPG-GRSTCQEGEQKGEGEGGREDRTCSLEAGSGWEAAAEAGACAGSGTATAGGERGVVGEEDXXXXXXXXXXXXXAC---SGGV-TPARPALVLSGEPDEEPGSPPTPASP-------GLADWEITEGTREMLRRAQPQXXXXXXXXXXXXXXXXXPRSLEALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNATLSPFSSSGRNGGRQRRGLNGDGRRGGGV----VEVGSSMEGLGASGTPQAEAAGTAVIGAGGVSMSAWG-SSSNPPTPARMGFEDDGAWTPGGQAPAVAGAAGDRESSLGSPDLSFRSPLQSDVTAHLVETVMSCGRQPDACTTPGDKEDSGPVTSPPEPT-PEPTPIRRRSLQGDEASIQGSLPKKAPRGDFWGNVPPASPVVESLQEATGEQ--PAPMSPETPATPKMLSPRFGIESSGGSADAXXXXXXXXXXXXXXXXXXXXNMALTPNVXXXXXXXXXXXDNSNTSGRGGSGSGHDEGSDGYDSESCPTPELSSPLRSTNISSRDLQVLTPSAARTDSGGNAGNGSYRRGSGDXXXXXXXXYDEDSYTCPTPELSSPLRAAGSAALCRRXXXXXXXXXXXXXXXGGVPLELVSEEEYAKAPKFLTIQVSRSVLNDTIENLNAYAAPRLGSPSELLLTVDEIMAIIDQGELSRTLLLSAAHLKRIEMKGPRMYRIR 2661 MSH EAFG L SF+VGLE KARDLR VLESSR+ DGKW+NGKDGTGIGERC+RAIGAASP QVTK+MIAEVAEQD+L+RQ EE+MRT+ PI+EATEKYQAL+EYNQLALEDLEERLSAYGYVRPARV+L A A PP SSVARLP K G ++G P C G +A G G +T G + G + LEAG G AEA GSG A GGE G EE+ XXX +GGV TPAR A L + E GLADWEITE A LS SS RQ+R RR GV V+ G+ E G +G G A S WG SSSNPPTPARM FE WTP + PA G G+R SS G+P L FRSPL SDVTA L+ET +S G++PD +TP ++ G S E T P+PTPI+R SLQG+EAS+ G LPK PRGDFWGN P S VV S +E T E P +PETPAT + R +E + G +GS G D E GG+ G PL+ VSEEEYA+APKFLTIQVSRSVLNDTI NLNAYA PRL SPSELLLTVDEIM IIDQGELSRTLLLSAAHLKRIEMKGPRMYRIR Sbjct: 1 MSHAEAFGQLGSFMVGLETKARDLRKVLESSRNEDGKWVNGKDGTGIGERCSRAIGAASPGQVTKEMIAEVAEQDRLMRQAEETMRTDRPIEEATEKYQALVEYNQLALEDLEERLSAYGYVRPARVALDTNTAVATAAPPGVSSVARLPTGAKTGG-----------RPAANGCHKSRPHQCETRGGGGGFVAAGDGAATAXXXXAAGTEKEGDAESGEGLEAG-GVTTGAEA--FVGSGVA-GGGEVGAEEEEEEDAIADGAVAXXXXXXXGTGGVATPARAASTLPVPQEGEXXXXXXXXXXXXXXXXXGLADWEITE-----------------------------------------------------------------------------AGLSRSSSR-----RQQR------RRSCGVGVGRVDDGTPSESSGGAGAADTPMTGRAAA-------SPWGGSSSNPPTPARMKFEG---WTPEERDPA--GVGGNRVSSTGTPSLGFRSPLNSDVTASLIETALSVGKRPDVASTPSEE---GACRSGTEITRPKPTPIKRVSLQGNEASVTGGLPK-GPRGDFWGNASPESSVVASSRENTAEHRPDPPRTPETPATAALC--RRRLEEADG-----------------------------------------------------------DGSRGDDDEVAGV-----------------------------GGSIG----------------------------------------------------------------PLDFVSEEEYARAPKFLTIQVSRSVLNDTIGNLNAYAEPRLASPSELLLTVDEIMGIIDQGELSRTLLLSAAHLKRIEMKGPRMYRIR 627
BLAST of mRNA_L-elsbetiae_contig60.14522.1 vs. uniprot
Match: A0A6H5JNT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT8_9PHAE) HSP 1 Score: 138 bits (347), Expect = 5.130e-35 Identity = 71/76 (93.42%), Postives = 73/76 (96.05%), Query Frame = 1 Query: 2434 APKFLTIQVSRSVLNDTIENLNAYAAPRLGSPSELLLTVDEIMAIIDQGELSRTLLLSAAHLKRIEMKGPRMYRIR 2661 APKFLTIQVSRSVLN+T+ NLNAYAAPRL SPSELLLTVDEIM IIDQGELSRTLLLSAAHLKRIEMKGPRMYRIR Sbjct: 3 APKFLTIQVSRSVLNETVGNLNAYAAPRLASPSELLLTVDEIMGIIDQGELSRTLLLSAAHLKRIEMKGPRMYRIR 78
BLAST of mRNA_L-elsbetiae_contig60.14522.1 vs. uniprot
Match: A0A6H5JWA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA7_9PHAE) HSP 1 Score: 102 bits (255), Expect = 6.790e-21 Identity = 75/161 (46.58%), Postives = 88/161 (54.66%), Query Frame = 1 Query: 2050 GSGHDE--GSDGYDSESCPTPELSSPLRSTNISSRDLQVLTPSAA--RTDSGGNAGNGSYRRGSGDXXXXXXXXYDED----SYTCPTPELSSPLRAAGSAALCRRXXXXXXXXXXXXXXX-----GGV--PLELVSEEEYAKA---------PKFLTIQV 2460 GS HD SDG+DS++CPTPELSSPLRS +S RDLQVLTPSA D GG+ G +Y YD S CPTPELSSPLR+AGSAALCRR GG PL+ VSEEEYA+A P++L++ V Sbjct: 65 GSDHDGCGSSDGFDSDACPTPELSSPLRSATVSVRDLQVLTPSAMVNTADGGGHRGGSTYN-------------YDXXXXXXSEQCPTPELSSPLRSAGSAALCRRRLEEAGGDGGRGDDDEVAGVGGTSGPLDFVSEEEYARAGGVPRCNSPPRWLSVAV 212
BLAST of mRNA_L-elsbetiae_contig60.14522.1 vs. uniprot
Match: A0A4D9D5B5_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5B5_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.120e-9 Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1 Query: 2398 PLELVSEEEYAKAPKFLTIQVSRSVLNDTIENLNAYAAPRL--GSPSELLLTVDEIMAIIDQGELSRTLLLSAAHLKRIEM----KGPRMYRI 2658 P+ V EEE+A+AP F+ IQV+R +LND I+ N++ + G L +D++ II QG+LS+T+LLS AHLKR+ M +G R Y+I Sbjct: 965 PIPEVPEEEFARAPSFIQIQVTREMLNDAIKVFNSHMKGKQHGGKSGVQALPLDQVTEIIAQGDLSKTILLSLAHLKRVGMSMTTQGQRAYKI 1057 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig60.14522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig60.14522.1 >prot_L-elsbetiae_contig60.14522.1 ID=prot_L-elsbetiae_contig60.14522.1|Name=mRNA_L-elsbetiae_contig60.14522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=876bp MSHTEAFGHLRSFVVGLEIKARDLRTVLESSRDNDGKWINGKDGTGIGERback to top mRNA from alignment at L-elsbetiae_contig60:51812..63902- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig60.14522.1 ID=mRNA_L-elsbetiae_contig60.14522.1|Name=mRNA_L-elsbetiae_contig60.14522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=12091bp|location=Sequence derived from alignment at L-elsbetiae_contig60:51812..63902- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig60:51812..63902- >mRNA_L-elsbetiae_contig60.14522.1 ID=mRNA_L-elsbetiae_contig60.14522.1|Name=mRNA_L-elsbetiae_contig60.14522.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5256bp|location=Sequence derived from alignment at L-elsbetiae_contig60:51812..63902- (Laminarionema elsbetiae ELsaHSoW15)back to top |