mRNA_L-elsbetiae_contig5999.14506.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5999.14506.1
Unique NamemRNA_L-elsbetiae_contig5999.14506.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: A0A172E700_PHATR (NADH dehydrogenase subunit 5 n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A172E700_PHATR)

HSP 1 Score: 97.1 bits (240), Expect = 5.000e-24
Identity = 42/46 (91.30%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNF+QMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAM++NR+GD
Sbjct:    7 ADNFIQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMIINRIGD 52
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BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: A0A8D6BYQ3_9PHAE (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=3 Tax=Punctaria TaxID=27943 RepID=A0A8D6BYQ3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 7.820e-23
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD
Sbjct:  130 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 175
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BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: A0A067ZR57_9PHAE (NADH dehydrogenase subunit 5 (Fragment) n=7 Tax=Silvetia compressa TaxID=93836 RepID=A0A067ZR57_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.860e-22
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAM+VNR+GD
Sbjct:    8 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMVVNRIGD 53
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BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: A0A2I4JDR1_HETAK (NADH-ubiquinone oxidoreductase chain 5 (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A2I4JDR1_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 2.620e-22
Identity = 44/46 (95.65%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNF+QMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNR+GD
Sbjct:   61 ADNFIQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRIGD 106
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BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: A0A3G1PWE2_9STRA (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Melosira undulata TaxID=2133757 RepID=A0A3G1PWE2_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 1.190e-21
Identity = 47/69 (68.12%), Postives = 54/69 (78.26%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGDLDRYTRSLPVYRYISLAFEYQNL 209
            ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAM++NR+GD       L ++ Y   A +Y  +
Sbjct:  130 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMIINRIGDFGLMLGILTIFIYFK-AVDYSTV 197
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BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: F8UWN3_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=87 Tax=Phaeophyceae TaxID=2870 RepID=F8UWN3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.620e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD
Sbjct:  130 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 175
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BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: Q2TUE3_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Desmarestia TaxID=31339 RepID=Q2TUE3_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.620e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD
Sbjct:  130 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 175
[Close]
BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: A0A8F0K0D6_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0K0D6_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.620e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD
Sbjct:  130 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 175
[Close]
BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: A0A3G5FPL7_9PHAE (NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A3G5FPL7_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.620e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD
Sbjct:  130 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 175
[Close]
BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Match: Q94YZ3_PYLLI (NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Pylaiella littoralis TaxID=2885 RepID=Q94YZ3_PYLLI)

HSP 1 Score: 99.0 bits (245), Expect = 1.620e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 3 
Query:    3 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 140
            ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD
Sbjct:  130 ADNFVQMFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGD 175
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5999.14506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A172E700_PHATR5.000e-2491.30NADH dehydrogenase subunit 5 n=1 Tax=Phaeodactylum... [more]
A0A8D6BYQ3_9PHAE7.820e-23100.00NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
A0A067ZR57_9PHAE1.860e-2295.65NADH dehydrogenase subunit 5 (Fragment) n=7 Tax=Si... [more]
A0A2I4JDR1_HETAK2.620e-2295.65NADH-ubiquinone oxidoreductase chain 5 (Fragment) ... [more]
A0A3G1PWE2_9STRA1.190e-2168.12NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Mel... [more]
F8UWN3_9PHAE1.620e-21100.00NADH-ubiquinone oxidoreductase chain 5 n=87 Tax=Ph... [more]
Q2TUE3_9PHAE1.620e-21100.00NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Des... [more]
A0A8F0K0D6_9PHAE1.620e-21100.00NADH-ubiquinone oxidoreductase chain 5 n=2 Tax=Cho... [more]
A0A3G5FPL7_9PHAE1.620e-21100.00NADH-ubiquinone oxidoreductase chain 5 n=3 Tax=Ect... [more]
Q94YZ3_PYLLI1.620e-21100.00NADH-ubiquinone oxidoreductase chain 5 n=1 Tax=Pyl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5999contigL-elsbetiae_contig5999:7039..7437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score83.2
Seed ortholog evalue5.7e-14
Seed eggNOG ortholog45351.EDO28017
KEGG rclassRC00061
KEGG koko:K03883
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone
EggNOG OGs38F5W@33154,COG1007@1,KOG4668@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size399
Cds size225
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5999.14506.1prot_L-elsbetiae_contig5999.14506.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5999 7059..7283 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.8000872-UTR-L-elsbetiae_contig5999:7038..70581622816650.8000872-UTR-L-elsbetiae_contig5999:7038..7058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5999 7039..7058 +
1691683712.677135-UTR-L-elsbetiae_contig5999:7038..70581691683712.677135-UTR-L-elsbetiae_contig5999:7038..7058Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5999 7039..7058 +
1622816650.8251653-UTR-L-elsbetiae_contig5999:7283..74371622816650.8251653-UTR-L-elsbetiae_contig5999:7283..7437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5999 7284..7437 +
1691683712.7029092-UTR-L-elsbetiae_contig5999:7283..74371691683712.7029092-UTR-L-elsbetiae_contig5999:7283..7437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5999 7284..7437 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.811583-CDS-L-elsbetiae_contig5999:7058..72831622816650.811583-CDS-L-elsbetiae_contig5999:7058..7283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5999 7059..7283 +
1691683712.6916525-CDS-L-elsbetiae_contig5999:7058..72831691683712.6916525-CDS-L-elsbetiae_contig5999:7058..7283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5999 7059..7283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5999.14506.1

>prot_L-elsbetiae_contig5999.14506.1 ID=prot_L-elsbetiae_contig5999.14506.1|Name=mRNA_L-elsbetiae_contig5999.14506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
MFVGWEGVGLCSYLLINFWFTRIQANKAAIKAMLVNRVGDLDRYTRSLPV
YRYISLAFEYQNLLPYRELHLFLV*
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mRNA from alignment at L-elsbetiae_contig5999:7039..7437+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5999.14506.1 ID=mRNA_L-elsbetiae_contig5999.14506.1|Name=mRNA_L-elsbetiae_contig5999.14506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=399bp|location=Sequence derived from alignment at L-elsbetiae_contig5999:7039..7437+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGATAATTTTGTTCAAATGTTTGTTGGTTGGGAAGGAGTAGGTCTT
TGCTCTTATTTATTAATTAATTTTTGGTTTACACGTATTCAAGCGAATAA
AGCGGCCATTAAAGCTATGTTGGTTAATCGAGTAGGCGACTTGGATAGAT
ACACACGGAGCCTACCGGTCTACCGGTACATATCTCTCGCGTTTGAATAC
CAAAATCTTTTGCCCTACCGTGAACTACATTTATTTCTAGTCTAACGCAG
TCGTAGATATTACATTTGTTTTGTCCTTGCCTAATCAAGCAACTACATGC
GTAAGTGTAACGGCAGACAGGCGCCGTCTTGGCTACTATGGCAGAATGCG
TCTGCAAGGTGTTTGCGTAATGCTAGATAACACGTGCTGGTGTCGCTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5999:7039..7437+

>mRNA_L-elsbetiae_contig5999.14506.1 ID=mRNA_L-elsbetiae_contig5999.14506.1|Name=mRNA_L-elsbetiae_contig5999.14506.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig5999:7039..7437+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTGTTGGTTGGGAAGGAGTAGGTCTTTGCTCTTATTTATTAATTAA
TTTTTGGTTTACACGTATTCAAGCGAATAAAGCGGCCATTAAAGCTATGT
TGGTTAATCGAGTAGGCGACTTGGATAGATACACACGGAGCCTACCGGTC
TACCGGTACATATCTCTCGCGTTTGAATACCAAAATCTTTTGCCCTACCG
TGAACTACATTTATTTCTAGTCTAAATGTTTGTTGGTTGGGAAGGAGTAG
GTCTTTGCTCTTATTTATTAATTAATTTTTGGTTTACACGTATTCAAGCG
AATAAAGCGGCCATTAAAGCTATGTTGGTTAATCGAGTAGGCGACTTGGA
TAGATACACACGGAGCCTACCGGTCTACCGGTACATATCTCTCGCGTTTG
AATACCAAAATCTTTTGCCCTACCGTGAACTACATTTATTTCTAGTCTAA
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