mRNA_L-elsbetiae_contig5998.14505.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5998.14505.1
Unique NamemRNA_L-elsbetiae_contig5998.14505.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5998.14505.1 vs. uniprot
Match: A0A6H5K219_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K219_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.120e-37
Identity = 75/126 (59.52%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:  382 MNKQLWELEEKRLVGGCCDTSKPPSGEIQVVTPHGAGGPPPR----SSRDVLTKILTARHVVDRRSLLEYSLHVGKAEHFEHLACWLRWKLGIGGLVSQLREPGINGAPLLFQAVKTTACFEAVKK 747
            +NK LW LEEKR   G CDTS PP+G+ Q     G  G P +    +SRD  TK+L+AR V+DRRS+LEY+  +GKA HFE LA WLRWKLG+G LV+QLREPG++GAPLLFQAV    CF+AV K
Sbjct:  144 LNKYLWRLEEKRQPLGGCDTSLPPTGDNQ-----GEAGQPNQQQSWASRDAATKVLSARDVMDRRSILEYAAALGKASHFEDLARWLRWKLGVGSLVNQLREPGVDGAPLLFQAVNVDECFKAVTK 264
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BLAST of mRNA_L-elsbetiae_contig5998.14505.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 5.640e-36
Identity = 76/126 (60.32%), Postives = 90/126 (71.43%), Query Frame = 1 
Query:  382 MNKQLWELEEKRLVGGCCDTSKPPSGEIQVVTPHGAGGPPPR----SSRDVLTKILTARHVVDRRSLLEYSLHVGKAEHFEHLACWLRWKLGIGGLVSQLREPGINGAPLLFQAVKTTACFEAVKK 747
            +NK LW LEEKR   G CDTS PP  + Q     G  G P +    +SRD  TK+L+AR V+DRRSLLEY+  +GKA HFE LA WLRWKLG+GGLV+QLREPG++GAPLLFQAV    CF+AV K
Sbjct:  188 LNKYLWRLEEKRHPLGGCDTSVPPIRDNQ-----GEAGQPYQQQSWASRDATTKVLSARDVMDRRSLLEYAAALGKASHFEDLALWLRWKLGVGGLVNQLREPGVDGAPLLFQAVNIDECFKAVTK 308
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5998.14505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K219_9PHAE2.120e-3759.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMR2_ECTSI5.640e-3660.32Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5998contigL-elsbetiae_contig5998:5748..10548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue1.8e-32
Seed eggNOG ortholog2880.D7FMR2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.store-operated calcium channel activity
EggNOG OGsKOG3609@1,KOG3609@2759
Ec32 ortholog descriptionTransient receptor potential channel, canonical
Ec32 orthologEc-23_001280.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size748
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5998.14505.1prot_L-elsbetiae_contig5998.14505.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5998 5748..10547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.7305768-CDS-L-elsbetiae_contig5998:5747..58311622816650.7305768-CDS-L-elsbetiae_contig5998:5747..5831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5998 5748..5831 +
1691683712.6320934-CDS-L-elsbetiae_contig5998:5747..58311691683712.6320934-CDS-L-elsbetiae_contig5998:5747..5831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5998 5748..5831 +
1622816650.7418404-CDS-L-elsbetiae_contig5998:8635..90191622816650.7418404-CDS-L-elsbetiae_contig5998:8635..9019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5998 8636..9019 +
1691683712.6432168-CDS-L-elsbetiae_contig5998:8635..90191691683712.6432168-CDS-L-elsbetiae_contig5998:8635..9019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5998 8636..9019 +
1622816650.753871-CDS-L-elsbetiae_contig5998:9435..96061622816650.753871-CDS-L-elsbetiae_contig5998:9435..9606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5998 9436..9606 +
1691683712.6522238-CDS-L-elsbetiae_contig5998:9435..96061691683712.6522238-CDS-L-elsbetiae_contig5998:9435..9606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5998 9436..9606 +
1622816650.7643356-CDS-L-elsbetiae_contig5998:10439..105471622816650.7643356-CDS-L-elsbetiae_contig5998:10439..10547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5998 10440..10547 +
1691683712.6637042-CDS-L-elsbetiae_contig5998:10439..105471691683712.6637042-CDS-L-elsbetiae_contig5998:10439..10547Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5998 10440..10547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5998.14505.1

>prot_L-elsbetiae_contig5998.14505.1 ID=prot_L-elsbetiae_contig5998.14505.1|Name=mRNA_L-elsbetiae_contig5998.14505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
CSETGGHTYKRERGVGSACELASLPTTQLRQVKVNKLRGIISGEDEDDDV
PTDGRLRDSSRAAEEKKSPDSKTSPPAEENKPHGGLVDVGDVATTTGSGW
KPPPPPPPLPPSRADWTREASPAPPRSMNKQLWELEEKRLVGGCCDTSKP
PSGEIQVVTPHGAGGPPPRSSRDVLTKILTARHVVDRRSLLEYSLHVGKA
EHFEHLACWLRWKLGIGGLVSQLREPGINGAPLLFQAVKTTACFEAVKK
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mRNA from alignment at L-elsbetiae_contig5998:5748..10548+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5998.14505.1 ID=mRNA_L-elsbetiae_contig5998.14505.1|Name=mRNA_L-elsbetiae_contig5998.14505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4801bp|location=Sequence derived from alignment at L-elsbetiae_contig5998:5748..10548+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTCTGAAACTGGGGGACACACGTATAAGAGAGAGAGGGGAGTAGGATC
GGCGTGCGAGCTTGCCTCTCTTCCCACCACCCAGGTATATAACGTACGCA
TGTGCGGGAAGATTGCGAGGTCTCCGTTTTTTCTTTTATTTTCGTGTGCA
CGGGTACAGGAGAGGCGGTGCAGGCACAGCTCGAGCTCTCTAAAGTAGGC
AGTTAGGGATGGCCGAGGCAAGTGCTCACTCCAAGAGTCACGAAGCACCG
GTAATAAGGGTATTCCTGTTGCATATTCAACATGGAACACACGCACGCGC
AGGCTTTGCTCTCTCTCTTGCAATACAGCAGCAGCGATGCATCCGTGGTT
GTGCCAGGCCCTTCTCAGTGCTTGCATGTACATACATATCATCGCCTATA
TCACAGATCTAGCGGCTCGGCTTGTCTATGTAGACCTGCACCGAGTTCGC
ACTTCCATTCATTGCGGTGCAACTATTGTAGACCTCATGGATGTGATGTT
TCTGGGCTATAATCTAGTGGAGAGAAATGTGAGAAACAACATGATACATA
CGACGGAGAGAGGTATCTGGGCGACAACAAATATTAAACAGAGGCACAAG
AAATACGAGACACACCGCAGATTTACGTGATGAGTATATACATACATACA
TCATACACACAAACGTGTGTTGGACGGAAGAAGCAGCTAGTGACACATTG
AAGAAAATGAGCATCAGGATCATGTAGCATCCAAAACTAACAAACTTGTT
GAGAGATGTTGTTTTTCCGGCCGAAAATAGGAAATCATGCCTAGAACCAT
ATGTCTTTACATCTGAAGCAAATGCCCCCCTTACTGCTGGCGGGCGGGGC
AGGGCTGTGTCTGTTAAATCTGAAAATAAAAAAGCGCCACGGCCAATATC
ACCCACCGACCCAATGAAGGCGGTACATACGGAGGAATACCCGACGGACA
CAATGAGGTGAAAATGAATGGTAATGTGCACGCGTACCCGTCCACGAACA
CTTTGAAGCTTCGCGTTCAACCCCCTATTCCCCCCCACCCCCTGAAGCTG
ACTTCCAAGGGGTCGGTTCCCGTTCTGTAGGGGATGGGTAACCCCGGTAG
GGTGTCACAAAACTCACAAACGTTTAGGGCAGGGTGCTTGTAGGGCAAGT
TGGGTAGGGCCACAAAATTCACAAGAGTTTAGAATGTATCTAGGGTACCA
CGGAAACCTCACAAAACTCACAGAAGAAGCCGTCTGGAGGGTACCTACCG
GCGGTTAACCCCCGGTATGGCTTTGCGGTTACCCCGCAGAACCCTACCCA
TTCTTTCTTGTGACTTTCTTCCTGCGATCCTGCAATCTCTACCCCCATCA
CCTTTTCCCTTTTGCCATTTTTTTCCGATGAAATCCTGCACAGCCCACTC
ACCGCATGCGTGACAGATGGCGTCTCATGACATAGGGGTAGACGCTTCTC
AGCGGAGCAAGGGGAAGACCGCCCTAGGAAGCCGCAGCTTTGGGGAAAGC
CAGTATGTGAGGAGCCCGAAGAAGTTAGAAAATCATCGCAAGAAGAGGGC
GAGATGTTCATTAAGCGTGCGCCCGAAGTATAAGTCTATCTATGTAGATA
GAGGTATGCACATATATATGTACATCATAAATTCTAGTAGTCAAGCCCCC
TCGATGTTTCGGGAATTAATTTGTATCCGCATTGGACATGTATGTGTATC
TGAGTACTAGAAACCCCGCGGGGGAAAAAATTTGCCCGCGCGAACCCGCG
GACCTCCACAAGACGCCCACAACCTGGACATACAAAGTTCAAACACTTGC
CATCGTTTCTACGGGCCTATCGCGTAGCGCGGCCCGCGATAGCGGGCCGC
CGCGAAGCGCTCTTGTACATAGTACCATGATGCCGACACATCGAGCAAAA
AAAGGAGAGAGTGTCGGTTAGAATTATCGGCGTGACGCCTTAATAACGAC
GCACTATCTAGTGCTGTTCGCAGTTTCTGGTTTATTTGTCTCCTTTTATT
GTCGTCGAACTACTGAAAGGAGCATATGCAGCCTATGGTCTGAAAAAGCA
ACAATCGATGCAATGGTTATTTGATTTCTCCTCCCAATATTGGCTTATTC
GTCGTCTTACTTCACTACGACTAGCTGGACGACCCAACCGGGGTCACACA
GGACGGGGGTTGGGGGTGGACCCTCTCTTGCGGTGCCTGCCTCTTGTGTT
TTTATCGCGAGCAGGGTTCAGCACTCCCTACCCTCGTCAACAATGAAGTC
GGAGTAATATTTACTGACGAAATCGCTTTCAATTTTCCAGGAACGAATGT
GTGTGAGAAAAAAACTCGCTTCGCCGGGGCTCGAACCCACGACCTGGTTC
TTAGAACGTTGCGGGAATACCAACACGCGATGCTATGCATGAGTGCCCCC
TGTTCCCTTCCTTCCCGCCTGTGCCCCCCGCCCGGGGCGTGCCGTGCCTG
GCGGTTTCAGGCGCCCGCACCGACTCGTTGTGCCAGGAGAAAGCCTTCCA
CACTCCTGTTTGTCACCTATGTATCTAGATATACCGTAATCGCCCCCGCC
CCATCTTTCTGCTTTTCGGGCTGGAGGTATGACTCCTCTGAGCTCCCCCA
CCCCCCCGGAAGGGAACGGCCCGGAGGCACGGTTTCTCTGAGTTCCGCCC
GGGGGGGGTTGCTTTTTTGTGTTTCTGCACAGAAACACAATCCCCTCCCC
AGGGGGGGGGGATTAGAGACAGAATAGACTACTGCATTTATCTAGATCTT
GGGGAGGAAAATTCCTTGAAAATTCCTTTTGGTGCATCTTGCTCGATTAG
CGTTGCTGAACGTTCGGATCCACCTCCTCCTCAAACCACCTCTCTATTTC
GGCTGGCGCGAACACACTCACCCTTCCGCGCTGGGCAGTTGCGGCAGGTC
AAGGTAAACAAGCTCCGGGGGATCATCTCCGGAGAAGACGAAGACGACGA
CGTTCCTACCGATGGCAGGTTACGCGACAGCAGCAGGGCCGCAGAAGAAA
AAAAGTCGCCGGACTCCAAGACATCTCCTCCGGCGGAGGAGAACAAGCCC
CACGGAGGACTCGTAGATGTCGGAGATGTCGCCACCACGACGGGCTCAGG
GTGGAAACCACCACCACCACCACCACCACTGCCACCATCACGAGCAGATT
GGACACGAGAGGCCTCACCTGCGCCCCCACGCAGTATGAACAAGCAGCTG
TGGGAGCTGGAAGAGAAGAGGCTGGTAGGGGGCTGCTGCGATACGAGCAA
GCCCCCGAGCGGGGAGATCCAGGTGCCTTTGTACTACATACATACATATG
CCTGTTGTTCTGAAATGATGTTGCTGTTGTTGGTGTTGTTGTTGTTGTTG
TTGTTGTTGTTGCTGTTGTTGTTGCTGATTTTGCTGCTGTTCACTCGTAT
GGCACGCTCTCGTTGCGCTTTTGTTGGCCTGTCACCAAAACACGACACTA
CGTAGCCTCCGGTCGCTTAAATCAATAAATACGGGCCGAACAAGCGCTGG
AGTGTGTGCGGAACGCATGTGAAAACACAACACCAACATCAACACAACAA
AAACAACAACAACAACAACAACAACCTCTCCCTGAGAAACGTTGAAAATA
ATAAATAACAGCTCAGAGAATAAAAATGGCCGGAATGCCCGCGCGGCGAA
CCGGCTACAAAACAAAGCAACACACGACCTCCACCCAGGTTGTAACCCCG
CACGGCGCGGGGGGCCCGCCGCCCCGCTCCTCGAGGGACGTGCTGACCAA
GATCCTGACAGCCAGGCACGTGGTCGACAGGAGGAGTCTCTTGGAGTACT
CGCTGCACGTCGGCAAGGCGGAGCATTTCGAACACCTGGCGTGCTGGTTG
CGATGGAAGGTGTGGCGCTTGACTTGCCCCCCCCGCCCCCCCCTGCCCCC
CCCCTACCCGTTAAATATCGGATGAATCACGGCGCCCCGCCCGCTGCACC
TGCTGGGCGGCTTGGGGAGCTCTGGTGGCGTCGCCTTTCTTGACCGCGGC
AGACATGTCCGTCATCATCTCCCCCCCCCGTGTTTGGTGGCGGCCGAGCT
CTGGCGGCGCAGATTGACGCCGCTCATGTTTGTCCTAGACATCTCCCTCC
ATCGCAGAACATTGGAAGATACTTAGTATTTAAAATAATAAACATTTTTG
GTGGGAAATATGCAAGAGAGAGCATTGGAGAGGAACAGTAGTTATGGTGG
AATATCGAAATTAGCATTTTTGCATCTAGCACGATATGTTCGTGTGGGAT
GAGTGGGTGTGTGTTTGTTGGATGTATCTGAAACTAATTGTCGGAGGGCA
ATCACAATAATGATGTTACACAAAAGAGGCAGAATGTCGTTCGAAGCAAC
ATGCGGCTCGTGGCCTTTGCGATCCGAGCCAACCAGTCGCGCTTTTGATT
TCTACCCGCTTTTGCCTGCTTTCCCTCTCTCTCCCCTCTCTCGCCGCCGT
TCTTTTTTTTTCTTCCTCTTGGCAGCGGGCCCCCATTGGCAATGAGCATA
CTTCTTCACCTTCGGTAGCGGAAGGGATGGCCATAATAGCGATCAGGGCA
ACTGACAGATAGATATGAGAGACGACCCCGCCGCCATATATGTACACACA
TACCCCCCCTTCTCCACCACCCGACCCCCTCTCACTTCTTTTTCGCGATT
CCCCCCATCCCACCACCGCATACCCCGGGCGGCGGCGGCCAGCTCGGCAT
CGGCGGTCTTGTGAGCCAGCTTCGGGAGCCCGGCATCAACGGAGCCCCCC
TGCTTTTCCAGGCGGTGAAGACAACGGCGTGTTTCGAGGCCGTTAAGAAG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5998:5748..10548+

>mRNA_L-elsbetiae_contig5998.14505.1 ID=mRNA_L-elsbetiae_contig5998.14505.1|Name=mRNA_L-elsbetiae_contig5998.14505.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig5998:5748..10548+ (Laminarionema elsbetiae ELsaHSoW15)
TGTTCTGAAACTGGGGGACACACGTATAAGAGAGAGAGGGGAGTAGGATC
GGCGTGCGAGCTTGCCTCTCTTCCCACCACCCAGTGTTCTGAAACTGGGG
GACACACGTATAAGAGAGAGAGGGGAGTAGGATCGGCGTGCGAGCTTGCC
TCTCTTCCCACCACCCAGTTGCGGCAGGTCAAGGTAAACAAGCTCCGGGG
GATCATCTCCGGAGAAGACGAAGACGACGACGTTCCTACCGATGGCAGGT
TACGCGACAGCAGCAGGGCCGCAGAAGAAAAAAAGTCGCCGGACTCCAAG
ACATCTCCTCCGGCGGAGGAGAACAAGCCCCACGGAGGACTCGTAGATGT
CGGAGATGTCGCCACCACGACGGGCTCAGGGTGGAAACCACCACCACCAC
CACCACCACTGCCACCATCACGAGCAGATTGGACACGAGAGGCCTCACCT
GCGCCCCCACGCAGTATGAACAAGCAGCTGTGGGAGCTGGAAGAGAAGAG
GCTGGTAGGGGGCTGCTGCGATACGAGCAAGCCCCCGAGCGGGGAGATCC
AGTTGCGGCAGGTCAAGGTAAACAAGCTCCGGGGGATCATCTCCGGAGAA
GACGAAGACGACGACGTTCCTACCGATGGCAGGTTACGCGACAGCAGCAG
GGCCGCAGAAGAAAAAAAGTCGCCGGACTCCAAGACATCTCCTCCGGCGG
AGGAGAACAAGCCCCACGGAGGACTCGTAGATGTCGGAGATGTCGCCACC
ACGACGGGCTCAGGGTGGAAACCACCACCACCACCACCACCACTGCCACC
ATCACGAGCAGATTGGACACGAGAGGCCTCACCTGCGCCCCCACGCAGTA
TGAACAAGCAGCTGTGGGAGCTGGAAGAGAAGAGGCTGGTAGGGGGCTGC
TGCGATACGAGCAAGCCCCCGAGCGGGGAGATCCAGGTTGTAACCCCGCA
CGGCGCGGGGGGCCCGCCGCCCCGCTCCTCGAGGGACGTGCTGACCAAGA
TCCTGACAGCCAGGCACGTGGTCGACAGGAGGAGTCTCTTGGAGTACTCG
CTGCACGTCGGCAAGGCGGAGCATTTCGAACACCTGGCGTGCTGGTTGCG
ATGGAAGGTTGTAACCCCGCACGGCGCGGGGGGCCCGCCGCCCCGCTCCT
CGAGGGACGTGCTGACCAAGATCCTGACAGCCAGGCACGTGGTCGACAGG
AGGAGTCTCTTGGAGTACTCGCTGCACGTCGGCAAGGCGGAGCATTTCGA
ACACCTGGCGTGCTGGTTGCGATGGAAGCTCGGCATCGGCGGTCTTGTGA
GCCAGCTTCGGGAGCCCGGCATCAACGGAGCCCCCCTGCTTTTCCAGGCG
GTGAAGACAACGGCGTGTTTCGAGGCCGTTAAGAAGCTCGGCATCGGCGG
TCTTGTGAGCCAGCTTCGGGAGCCCGGCATCAACGGAGCCCCCCTGCTTT
TCCAGGCGGTGAAGACAACGGCGTGTTTCGAGGCCGTTAAGAAG
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