prot_L-elsbetiae_contig5989.14496.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5989.14496.1
Unique Nameprot_L-elsbetiae_contig5989.14496.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length40
Homology
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BLAST of mRNA_L-elsbetiae_contig5989.14496.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.390e-9
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 0 
Query:    1 MNITRENFEEMFETICEAIRSSHFIALDAEFTG 33
            MNIT+ENFE+ F+ ICEAIRSSHFIALD EFTG
Sbjct:    1 MNITKENFEQSFDVICEAIRSSHFIALDTEFTG 33
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5989.14496.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNN0_ECTSI1.390e-981.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..39
e-value: 9.6E-10
score: 40.0
IPR006941Ribonuclease CAF1PFAMPF04857CAF1coord: 3..33
e-value: 8.4E-9
score: 35.0
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5989contigL-elsbetiae_contig5989:11051..11170 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5989.14496.1mRNA_L-elsbetiae_contig5989.14496.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5989 11045..11170 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5989.14496.1 ID=prot_L-elsbetiae_contig5989.14496.1|Name=mRNA_L-elsbetiae_contig5989.14496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=40bp
MNITRENFEEMFETICEAIRSSHFIALDAEFTGENRGKL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR006941RNase_CAF1
IPR012337RNaseH-like_sf