mRNA_L-elsbetiae_contig5986.14492.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5986.14492.1
Unique NamemRNA_L-elsbetiae_contig5986.14492.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5986.14492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5986contigL-elsbetiae_contig5986:9845..10595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size246
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5986.14492.1prot_L-elsbetiae_contig5986.14492.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5986 9845..10580 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.4231582-CDS-L-elsbetiae_contig5986:9844..100191622816649.4231582-CDS-L-elsbetiae_contig5986:9844..10019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 9845..10019 -
1691683711.698567-CDS-L-elsbetiae_contig5986:9844..100191691683711.698567-CDS-L-elsbetiae_contig5986:9844..10019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 9845..10019 -
1622816649.437632-CDS-L-elsbetiae_contig5986:10509..105801622816649.437632-CDS-L-elsbetiae_contig5986:10509..10580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 10510..10580 -
1691683711.7151577-CDS-L-elsbetiae_contig5986:10509..105801691683711.7151577-CDS-L-elsbetiae_contig5986:10509..10580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5986 10510..10580 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.4509702-UTR-L-elsbetiae_contig5986:10580..105951622816649.4509702-UTR-L-elsbetiae_contig5986:10580..10595Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5986 10581..10595 -
1691683711.7258809-UTR-L-elsbetiae_contig5986:10580..105951691683711.7258809-UTR-L-elsbetiae_contig5986:10580..10595Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5986 10581..10595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5986.14492.1

>prot_L-elsbetiae_contig5986.14492.1 ID=prot_L-elsbetiae_contig5986.14492.1|Name=mRNA_L-elsbetiae_contig5986.14492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MREQLDQSLRRLHDAQNSAAETTRHAEEESLALKEALSSANSRLAKLDCL
EADVASRAKEIQVCKYIRHVGQPSVHFCTSRV
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mRNA from alignment at L-elsbetiae_contig5986:9845..10595-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5986.14492.1 ID=mRNA_L-elsbetiae_contig5986.14492.1|Name=mRNA_L-elsbetiae_contig5986.14492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=751bp|location=Sequence derived from alignment at L-elsbetiae_contig5986:9845..10595- (Laminarionema elsbetiae ELsaHSoW15)
CACGAAGCCAACTCTATGCGCGAGCAGCTGGACCAGAGTCTCCGGAGACT
GCACGACGCGCAAAACAGCGCGGCGGAGACAACGAGGTACTCTACTTCTC
ATAGCGAACGGGCGAACGAAGTGAGCCAGGCAAAGCCTACGTCTGGTACA
TGTGTCTCCGGATATTTGACTGATTTGCACGTCCAATTCGTGACCGTGAT
GGCAGAAGATAGGGACGCCCACCCTTGCGTTAATTTCGGTCTATGTCTTG
TTTTGTTTTTCTTCTGGTGTCTGGTGGCAACGCACAAACGTACACACTTT
GTCTGATTAACCGGCCGACGTGATTTGGTTGAAATATAGACTACCATATG
CATTAGCATAGGTACGCAATGCAACAGGTAAGTGCTGTTTTTATTAGTTG
AATGAGTTTCGACTGATTTGGGTCAAATATAGACTACGCATACATTTAGG
GATTTGCGTATGTGCATGAGTTGTGGTACAACAGGCAAGTGCTGTTCTTA
TTGGTTGAAGTAATTTTCAGATCAAAAATACACCGATGATGACACAGACC
GCAACAATGGCCGTGCTCGCCGGCAGGCACGCAGAAGAGGAATCGCTGGC
CCTGAAAGAAGCCCTCTCCAGCGCAAACTCCCGGTTAGCCAAGCTCGACT
GTCTTGAGGCAGACGTCGCATCTCGAGCCAAGGAGATCCAGGTATGTAAG
TACATAAGACATGTCGGTCAACCATCCGTGCACTTTTGCACATCCCGCGT
T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5986:9845..10595-

>mRNA_L-elsbetiae_contig5986.14492.1 ID=mRNA_L-elsbetiae_contig5986.14492.1|Name=mRNA_L-elsbetiae_contig5986.14492.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig5986:9845..10595- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGCGAGCAGCTGGACCAGAGTCTCCGGAGACTGCACGACGCGCAAAA
CAGCGCGGCGGAGACAACGAGATGCGCGAGCAGCTGGACCAGAGTCTCCG
GAGACTGCACGACGCGCAAAACAGCGCGGCGGAGACAACGAGGCACGCAG
AAGAGGAATCGCTGGCCCTGAAAGAAGCCCTCTCCAGCGCAAACTCCCGG
TTAGCCAAGCTCGACTGTCTTGAGGCAGACGTCGCATCTCGAGCCAAGGA
GATCCAGGTATGTAAGTACATAAGACATGTCGGTCAACCATCCGTGCACT
TTTGCACATCCCGCGTTGCACGCAGAAGAGGAATCGCTGGCCCTGAAAGA
AGCCCTCTCCAGCGCAAACTCCCGGTTAGCCAAGCTCGACTGTCTTGAGG
CAGACGTCGCATCTCGAGCCAAGGAGATCCAGGTATGTAAGTACATAAGA
CATGTCGGTCAACCATCCGTGCACTTTTGCACATCCCGCGTT
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