prot_L-elsbetiae_contig5983.14487.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5983.14487.1
Unique Nameprot_L-elsbetiae_contig5983.14487.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length193
Homology
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BLAST of mRNA_L-elsbetiae_contig5983.14487.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 3.490e-38
Identity = 84/195 (43.08%), Postives = 123/195 (63.08%), Query Frame = 0 
Query:    1 VFVNLCLTTLQAVLAFYGSRQSHENTALYGVVVGISVLKLVVSYVGEMIPCMDAINEHSMTQLGYAKRYRR--KSSMARRGVSDQTEKRTSTQHLAATVIQSRVRQFLVRKRIIRRQEVLAWHGDSVKDIRKKIINHAYIFLITYTLVVVWINLCYVVTYDTPTIWRWTAATSATVLIDVLLRKPISVLMMSALH 193
            VF  + +T LQ VLAF+G R +  +TALYG +  +S+  +  S+  E++PCMDA+N+  M+Q+  AK YR   K   + + VS  T      ++ AA  IQ+ VR +  R+R +RRQEV+AW    V+ +RK++   AY  LI +T  V WINLCYV  YD P I  W AAT   VL+D++LRKP+SVL+++ ++
Sbjct:  683 VFARIVVTALQVVLAFHGMRNAASSTALYGTLFALSIAMIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSWTIDLCILRNTAAVKIQTLVRMYQARQRAVRRQEVVAWQSPHVRSMRKRLTFRAYTCLIVFTASVAWINLCYVALYDGPAIRNWIAATGIAVLVDIVLRKPLSVLVVATVN 877
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BLAST of mRNA_L-elsbetiae_contig5983.14487.1 vs. uniprot
Match: D7G3A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A0_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 1.730e-8
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0 
Query:    1 VFVNLCLTTLQAVLAFYGSRQSHENTALYGVVVGISVLKLVVSYVGEMIPCMDAINEHSMTQL 63
            VFV+L LTTLQ VLAFY  +       LY  V  IS++KL+V  +GE++P M AINEH+MTQ+
Sbjct: 1059 VFVSLGLTTLQLVLAFYCMQMEETGFGLYLSVFIISLIKLIVCQMGELVPSMGAINEHTMTQV 1121
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5983.14487.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLT2_9PHAE3.490e-3843.08GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3A0_ECTSI1.730e-853.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 163..180
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 27..46
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 136..157
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..26
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 47..135
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 158..162
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 181..193
NoneNo IPR availableSIGNALP_EUKSignalP-TMSignalP-TMcoord: 1..15
score: 0.551
NoneNo IPR availableTMHMMTMhelixcoord: 26..45
NoneNo IPR availableTMHMMTMhelixcoord: 136..158
IPR000048IQ motif, EF-hand binding sitePROSITEPS50096IQcoord: 91..119
score: 7.181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5983contigL-elsbetiae_contig5983:6199..8646 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5983.14487.1mRNA_L-elsbetiae_contig5983.14487.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5983 6199..8648 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5983.14487.1 ID=prot_L-elsbetiae_contig5983.14487.1|Name=mRNA_L-elsbetiae_contig5983.14487.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
VFVNLCLTTLQAVLAFYGSRQSHENTALYGVVVGISVLKLVVSYVGEMIP
CMDAINEHSMTQLGYAKRYRRKSSMARRGVSDQTEKRTSTQHLAATVIQS
RVRQFLVRKRIIRRQEVLAWHGDSVKDIRKKIINHAYIFLITYTLVVVWI
NLCYVVTYDTPTIWRWTAATSATVLIDVLLRKPISVLMMSALH
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000048IQ_motif_EF-hand-BS