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Homology
BLAST of mRNA_L-elsbetiae_contig5983.14487.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE) HSP 1 Score: 149 bits (376), Expect = 3.490e-38 Identity = 84/195 (43.08%), Postives = 123/195 (63.08%), Query Frame = 1
Query: 1 VFVNLCLTTLQAVLAFYGSRQSHENTALYGVVVGISVLKLVVSYVGEMIPCMDAINEHSMTQLGYAKRYRR--KSSMARRGVSDQTEKRTSTQHLAATVIQSRVRQFLVRKRIIRRQEVLAWHGDSVKDIRKKIINHAYIFLITYTLVVVWINLCYVVTYDTPTIWRWTAATSATVLIDVLLRKPISVLMMSALH 579
VF + +T LQ VLAF+G R + +TALYG + +S+ + S+ E++PCMDA+N+ M+Q+ AK YR K + + VS T ++ AA IQ+ VR + R+R +RRQEV+AW V+ +RK++ AY LI +T V WINLCYV YD P I W AAT VL+D++LRKP+SVL+++ ++
Sbjct: 683 VFARIVVTALQVVLAFHGMRNAASSTALYGTLFALSIAMIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSWTIDLCILRNTAAVKIQTLVRMYQARQRAVRRQEVVAWQSPHVRSMRKRLTFRAYTCLIVFTASVAWINLCYVALYDGPAIRNWIAATGIAVLVDIVLRKPLSVLVVATVN 877
BLAST of mRNA_L-elsbetiae_contig5983.14487.1 vs. uniprot
Match: D7G3A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3A0_ECTSI) HSP 1 Score: 63.9 bits (154), Expect = 1.730e-8 Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1
Query: 1 VFVNLCLTTLQAVLAFYGSRQSHENTALYGVVVGISVLKLVVSYVGEMIPCMDAINEHSMTQL 189
VFV+L LTTLQ VLAFY + LY V IS++KL+V +GE++P M AINEH+MTQ+
Sbjct: 1059 VFVSLGLTTLQLVLAFYCMQMEETGFGLYLSVFIISLIKLIVCQMGELVPSMGAINEHTMTQV 1121
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 125.2 |
| Seed ortholog evalue | 3.4e-26 |
| Seed eggNOG ortholog | 2880.D7G4X3 |
| Hectar predicted targeting category | signal peptide |
| EggNOG free text desc. | detection of mechanical stimulus |
| EggNOG OGs | KOG3599@1,KOG3599@2759 |
| COG Functional cat. | E |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 5 |
| Model size | 583 |
| Cds size | 579 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816649.0980763-CDS-L-elsbetiae_contig5983:6198..6333 | 1622816649.0980763-CDS-L-elsbetiae_contig5983:6198..6333 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 6199..6333 + |
| 1691683711.4678895-CDS-L-elsbetiae_contig5983:6198..6333 | 1691683711.4678895-CDS-L-elsbetiae_contig5983:6198..6333 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 6199..6333 + |
| 1622816649.1083941-CDS-L-elsbetiae_contig5983:6988..7039 | 1622816649.1083941-CDS-L-elsbetiae_contig5983:6988..7039 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 6989..7039 + |
| 1691683711.4803114-CDS-L-elsbetiae_contig5983:6988..7039 | 1691683711.4803114-CDS-L-elsbetiae_contig5983:6988..7039 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 6989..7039 + |
| 1622816649.121029-CDS-L-elsbetiae_contig5983:7612..7755 | 1622816649.121029-CDS-L-elsbetiae_contig5983:7612..7755 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 7613..7755 + |
| 1691683711.4909642-CDS-L-elsbetiae_contig5983:7612..7755 | 1691683711.4909642-CDS-L-elsbetiae_contig5983:7612..7755 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 7613..7755 + |
| 1622816649.135871-CDS-L-elsbetiae_contig5983:8011..8173 | 1622816649.135871-CDS-L-elsbetiae_contig5983:8011..8173 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 8012..8173 + |
| 1691683711.508089-CDS-L-elsbetiae_contig5983:8011..8173 | 1691683711.508089-CDS-L-elsbetiae_contig5983:8011..8173 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 8012..8173 + |
| 1622816649.1468992-CDS-L-elsbetiae_contig5983:8558..8646 | 1622816649.1468992-CDS-L-elsbetiae_contig5983:8558..8646 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 8559..8646 + |
| 1691683711.5198798-CDS-L-elsbetiae_contig5983:8558..8646 | 1691683711.5198798-CDS-L-elsbetiae_contig5983:8558..8646 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5983 8559..8646 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5983.14487.1 >prot_L-elsbetiae_contig5983.14487.1 ID=prot_L-elsbetiae_contig5983.14487.1|Name=mRNA_L-elsbetiae_contig5983.14487.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=193bp
VFVNLCLTTLQAVLAFYGSRQSHENTALYGVVVGISVLKLVVSYVGEMIP
CMDAINEHSMTQLGYAKRYRRKSSMARRGVSDQTEKRTSTQHLAATVIQS
RVRQFLVRKRIIRRQEVLAWHGDSVKDIRKKIINHAYIFLITYTLVVVWI
NLCYVVTYDTPTIWRWTAATSATVLIDVLLRKPISVLMMSALH back to topmRNA from alignment at L-elsbetiae_contig5983:6199..8648+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5983.14487.1 ID=mRNA_L-elsbetiae_contig5983.14487.1|Name=mRNA_L-elsbetiae_contig5983.14487.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2450bp|location=Sequence derived from alignment at L-elsbetiae_contig5983:6199..8648+ (Laminarionema elsbetiae ELsaHSoW15)
GTATTCGTTAACCTGTGTCTCACGACACTTCAGGCGGTGCTAGCATTTTA
CGGAAGCCGGCAAAGCCACGAAAATACCGCGCTGTACGGCGTGGTTGTCG
GCATTTCCGTCTTGAAGCTGGTCGTGAGCTATGTGGTGAGGATCTTGGCC
TCGCGCGTTCCGGCACAGCCGAAAGTAGATGATACTTCGAGGCAGGTATG
CCCTCGCACACAGTGAGCAACTGGTTGGAGGATATTGATACTACTGTTGC
GGAGCAAGTTTGGAGGTGGGTGTCCAATTTAGTGAGAGATTTAGATGCGG
TTGCTCTTGCTGTGTTACCACGACATGACCGCGCGACAATGCGAGTGATC
AGCTAGCCATCAAAACTCTCTTTGATGGGATTTCCCTCGATAAAGCGGCT
TGCGCTATCACAGCAGCAACATAGAAGCACTCAAACTCAATACATTTGAC
AACTCCAATTCATCCTGATTATTTTGCTGTGAAAGGTACATTTGGAGAGT
CCTAGAATCAGGACATGCCCATCCTCGCACATGATAGCGTTAGATGACAT
GGATGCGGAGAAAGGGAGGACGGCACGAGCGTCGTTGTGGTACAAATACC
GTTTTAGCCGATACTGAAGCGGGGCGGGGGCACGCATAGAACTCACTGAC
CAACGTATACATCGCCAGTAGTGCCTCGGTCTCGTACACCTCCCGCAATA
ATAATAGAGTGCTCATCAAACCTTTCTCCACTCCTTCTGACTTGTCTGTC
TCTTTGTCTATCGTCCCCTGCCCATGTGCGTTGCACAAAGGGCGAAATGA
TCCCATGCATGGATGCAATCAACGAGCACTCCATGACACAGGTGTGGAAT
CTTGTAGTGATAAACGATCGTTTATTATGTCATGATAGAAAGGAAGGGGG
GTGGAGGATTTCGAAACAATCATTAACGCATGTAGTCAACACGCAAGGTA
GGGGCTCGTGTACAAAGATTCCAACTTTGGGCATACTCGGCTGTTAGCGT
TCAGCAATGGTTTGAAGTGAAGAGACACCCCGTAGGTTGTGGACGTCATA
AACCCGAACACAAGAACAGAGAACGTTCGCAGACGCTGCAAGGAAGTAAT
ATGGTTAAAGTCGTAGACTAACTGCATGAAAAAATCGCATTTCCTGGTTC
AATTGGCCACCATGTATAGTTACAAAGGTTGCCATAAAAAGTGGTTACTC
TTCCAGTCGGCGCTGCAACAGTGAAACTTCGGAGCGCATGTACCTGGTCT
CGTTAAAGAATATTTTCCGTGCAGCGTGTAAGGCGGCATTTATTTGCAAC
GTTGACGGAGTAGTGATCAAGTGAAGTACGATTGTTATTTCTCAGCCAGC
AATGTGACATGTTGGAGCTGATTGTGTGCTTTCACCCCGTGAAAAACAAT
GTATTGTGCCTCAGCTCGGCTACGCGAAGAGGTACCGCCGCAAGAGCTCG
ATGGCCCGGCGAGGAGTGTCCGACCAGACAGAAAAGAGAACTTCCACTCA
GCACCTAGCTGCCACAGTTATCCAATCTCGCGTGCGTCAATTTCTGGTTC
GCAAAAGGTAAGCTTATGGATCAAATGTCGTTTTGCCTACATTTGTATTT
TAGGGATACTGTTGCGCCTCGAACTGAACAACATTTTTCCGTGAGAGGCA
ATGTGTGCGAGTTGTGCACGGACCGCCATGGTATATACACCTGATGTACA
GTCTCCTCAGGTTGCGGTGCTTAAGAAACTGCGGGGGGGTCAGTTTCACT
TGTGCGCCTCCGAGTATCACAACCCCAACCAAATAGTGTATGACCTATTT
ACTAACGCTGCAGGATCATCAGGAGGCAAGAGGTCCTAGCCTGGCACGGC
GACAGCGTTAAGGACATCAGGAAGAAGATCATCAACCACGCCTACATATT
TCTCATTACATACACGCTGGTGGTTGTCTGGATCAACCTCTGTTACGTTG
TCACATACGATACTCCCACCATCTGGTACGCAGATACATTTTGGACACCC
TTTTTTCAAATATTTAGTTAGGCTTGTATTGGCTCATATCAGGGTCTCCC
TTAGCGCTGCTGGTGTAGTGTAACTTGTTTTGCCAACACCGTGAATGGGC
CCATGTGCTGCTCACAACTTACATAGTTGGAACGGGGCACCCGACACGTG
TGCTGCGAACAGCATATCTAGACTAGATATATATATCTATATTTCATAGG
CCGACAGCACCAAGAACCCCATGCACTACTGTGTGAGACTTCACAATATG
CACGCAATATGCCTTCCCTGCTATGTACGTGTCACTTATTCACAGCGATC
TCTTTGTGCTGTAACTACACTGTGATGTTCCTACTGCTGTGCTACCATTC
TGTCGGGCAGGCGCTGGACGGCGGCGACGAGCGCGACGGTACTGATCGAC
GTTTTGCTGCGAAAGCCTATTTCTGTTCTTATGATGTCCGCGTTGCACAC
back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5983:6199..8648+ >mRNA_L-elsbetiae_contig5983.14487.1 ID=mRNA_L-elsbetiae_contig5983.14487.1|Name=mRNA_L-elsbetiae_contig5983.14487.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1158bp|location=Sequence derived from alignment at L-elsbetiae_contig5983:6199..8648+ (Laminarionema elsbetiae ELsaHSoW15)
GTATTCGTTAACCTGTGTCTCACGACACTTCAGGCGGTGCTAGCATTTTA
CGGAAGCCGGCAAAGCCACGAAAATACCGCGCTGTACGGCGTGGTTGTCG
GCATTTCCGTCTTGAAGCTGGTCGTGAGCTATGTGGTATTCGTTAACCTG
TGTCTCACGACACTTCAGGCGGTGCTAGCATTTTACGGAAGCCGGCAAAG
CCACGAAAATACCGCGCTGTACGGCGTGGTTGTCGGCATTTCCGTCTTGA
AGCTGGTCGTGAGCTATGTGGGCGAAATGATCCCATGCATGGATGCAATC
AACGAGCACTCCATGACACAGGGCGAAATGATCCCATGCATGGATGCAAT
CAACGAGCACTCCATGACACAGCTCGGCTACGCGAAGAGGTACCGCCGCA
AGAGCTCGATGGCCCGGCGAGGAGTGTCCGACCAGACAGAAAAGAGAACT
TCCACTCAGCACCTAGCTGCCACAGTTATCCAATCTCGCGTGCGTCAATT
TCTGGTTCGCAAAAGCTCGGCTACGCGAAGAGGTACCGCCGCAAGAGCTC
GATGGCCCGGCGAGGAGTGTCCGACCAGACAGAAAAGAGAACTTCCACTC
AGCACCTAGCTGCCACAGTTATCCAATCTCGCGTGCGTCAATTTCTGGTT
CGCAAAAGGATCATCAGGAGGCAAGAGGTCCTAGCCTGGCACGGCGACAG
CGTTAAGGACATCAGGAAGAAGATCATCAACCACGCCTACATATTTCTCA
TTACATACACGCTGGTGGTTGTCTGGATCAACCTCTGTTACGTTGTCACA
TACGATACTCCCACCATCTGGATCATCAGGAGGCAAGAGGTCCTAGCCTG
GCACGGCGACAGCGTTAAGGACATCAGGAAGAAGATCATCAACCACGCCT
ACATATTTCTCATTACATACACGCTGGTGGTTGTCTGGATCAACCTCTGT
TACGTTGTCACATACGATACTCCCACCATCTGGCGCTGGACGGCGGCGAC
GAGCGCGACGGTACTGATCGACGTTTTGCTGCGAAAGCCTATTTCTGTTC
TTATGATGTCCGCGTTGCACGCGCTGGACGGCGGCGACGAGCGCGACGGT
ACTGATCGACGTTTTGCTGCGAAAGCCTATTTCTGTTCTTATGATGTCCG
CGTTGCAC back to top
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