mRNA_L-elsbetiae_contig5981.14485.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5981.14485.1
Unique NamemRNA_L-elsbetiae_contig5981.14485.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5981.14485.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5981contigL-elsbetiae_contig5981:295..734 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size442
Cds size432
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.9821286-CDS-L-elsbetiae_contig5981:294..7261622816648.9821286-CDS-L-elsbetiae_contig5981:294..726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5981 295..726 +
1691683711.3918836-CDS-L-elsbetiae_contig5981:294..7261691683711.3918836-CDS-L-elsbetiae_contig5981:294..726Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5981 295..726 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816648.9966528-UTR-L-elsbetiae_contig5981:726..7341622816648.9966528-UTR-L-elsbetiae_contig5981:726..734Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5981 727..734 +
1691683711.4074945-UTR-L-elsbetiae_contig5981:726..7341691683711.4074945-UTR-L-elsbetiae_contig5981:726..734Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5981 727..734 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5981.14485.1prot_L-elsbetiae_contig5981.14485.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5981 295..726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5981.14485.1

>prot_L-elsbetiae_contig5981.14485.1 ID=prot_L-elsbetiae_contig5981.14485.1|Name=mRNA_L-elsbetiae_contig5981.14485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
VGLLRSPRGDKLKSGLENKIGPHTRPNKTNKICQNLDGNAIFSPTKKRAQ
NLLRSNDPPETELSYNIRYVTRGYVSRSEQFGSGFREIVGKINRTDYTAS
SRGSAHARTGMQTRIYYPKFAPKRICMQARLGRIRMHIHTFYP*
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mRNA from alignment at L-elsbetiae_contig5981:295..734+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5981.14485.1 ID=mRNA_L-elsbetiae_contig5981.14485.1|Name=mRNA_L-elsbetiae_contig5981.14485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=440bp|location=Sequence derived from alignment at L-elsbetiae_contig5981:295..734+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGGGTTGCTGCGTAGCCCTCGGGGTGATAAGCTCAAATCCGGTCTTGA
AAATAAAATTGGACCTCACACTCGACCAAATAAAACTAACAAAATCTGCC
AAAATCTCGACGGAAACGCGATTTTCTCGCCGACCAAAAAACGAGCACAA
AATCTGCTCCGATCAAACGATCCGCCTGAAACAGAGCTTTCCTACAATAT
AAGGTATGTTACTAGGGGGTACGTCAGTCGTTCAGAACAATTCGGGAGTG
GTTTTAGGGAAATCGTGGGAAAAATTAACCGGACGGACTATACGGCGAGC
AGCAGAGGTTCTGCGCACGCACGTACCGGCATGCAGACACGCATTTATTA
TCCGAAATTCGCACCCAAGCGCATATGTATGCAGGCCAGATTAGGCCGCA
TCAGGATGCACATACATACTTTTTACCCGTAGATTTCCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5981:295..734+

>mRNA_L-elsbetiae_contig5981.14485.1 ID=mRNA_L-elsbetiae_contig5981.14485.1|Name=mRNA_L-elsbetiae_contig5981.14485.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig5981:295..734+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGGGTTGCTGCGTAGCCCTCGGGGTGATAAGCTCAAATCCGGTCTTGA
AAATAAAATTGGACCTCACACTCGACCAAATAAAACTAACAAAATCTGCC
AAAATCTCGACGGAAACGCGATTTTCTCGCCGACCAAAAAACGAGCACAA
AATCTGCTCCGATCAAACGATCCGCCTGAAACAGAGCTTTCCTACAATAT
AAGGTATGTTACTAGGGGGTACGTCAGTCGTTCAGAACAATTCGGGAGTG
GTTTTAGGGAAATCGTGGGAAAAATTAACCGGACGGACTATACGGCGAGC
AGCAGAGGTTCTGCGCACGCACGTACCGGCATGCAGACACGCATTTATTA
TCCGAAATTCGCACCCAAGCGCATATGTATGCAGGCCAGATTAGGCCGCA
TCAGGATGCACATACATACTTTTTACCCGTAGGTTGGGTTGCTGCGTAGC
CCTCGGGGTGATAAGCTCAAATCCGGTCTTGAAAATAAAATTGGACCTCA
CACTCGACCAAATAAAACTAACAAAATCTGCCAAAATCTCGACGGAAACG
CGATTTTCTCGCCGACCAAAAAACGAGCACAAAATCTGCTCCGATCAAAC
GATCCGCCTGAAACAGAGCTTTCCTACAATATAAGGTATGTTACTAGGGG
GTACGTCAGTCGTTCAGAACAATTCGGGAGTGGTTTTAGGGAAATCGTGG
GAAAAATTAACCGGACGGACTATACGGCGAGCAGCAGAGGTTCTGCGCAC
GCACGTACCGGCATGCAGACACGCATTTATTATCCGAAATTCGCACCCAA
GCGCATATGTATGCAGGCCAGATTAGGCCGCATCAGGATGCACATACATA
CTTTTTACCCGTAG
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