mRNA_L-elsbetiae_contig598.14479.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: D8LJZ7_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJZ7_ECTSI) HSP 1 Score: 593 bits (1528), Expect = 1.020e-199 Identity = 368/566 (65.02%), Postives = 418/566 (73.85%), Query Frame = 1 Query: 382 QDHDEANTGGL-RLAVVGENADELGIRLAERYGLAATSMDELMKGRKGRKTDNVKARAASEWLATSGAADGGGILTSFPMTAAQAELLGEQGVDIQQLLVLVARAGADGAGDRSSVDXXXXXXXXXXXXXXXXKGRQLLTERLAGRVVKLAGQRDVDSLCDSAASLLALGKRKQRSSGDAXXXXXXXXXXXXXXSAAVRASEPSPMLCDADVTMSPTERAAALQEAGGLDPTDSDVED-QRARSRVAAESNRAKKEALRRKKRAANDAQRLDTPFYVAVAQGGPKARFRPPVPVIPSRITERLASAV-PXXXXXXXXXXXXXXANTRLEFGALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLG---AGAAEEDAPWQVVLALPTRELAVQVAREVVLLSGGLTSSVELLVDAGAFRDLSKVTAPIVVGSAKVLERVIRKSRPDVRNDVLPRVKCLVVDEVDRLVDVLSKHAPAREAEKRKRHARPIAALLERVLSASGDAQ 2061 QDH+ + GL RLA+VGENADELG+R+AER+GL ATSMD LMKGRKGRKTDNVKA+AA+EWL T A+ GG +LT FP TA QAELL +QGV ++QL VL+ RAGA A + ++ + LLT RL G+VVKL Q+DVDSLCDSAASLLA +QRSS AA ++ P L DAD+ MSP+E A A EA +P + D +RARSR A++ RA+K A+RRKKR AN+AQ+LDTPFYVAVAQGGPKARFRPPVP++PSRITERL+SA P XXXXXXXX NTRL+FG LVLDSPASDCLLAAGITEPTGIQ+AGMGPIL+GESVILHAMTGSGKTLTFLLPLMQRWTPGLLS A G G+ AG APWQ++LALPTRELAVQVAREVVLLSGGLT+SVELLVDA F DLSKVTAPIVVGSAKVLER IRKSRP VR DVLPR+KC+VVDEVDRLVDVLSKHAPA+EAEKRKRHARPIAALLERVL+A+G+AQ Sbjct: 17 QDHEPSRPAGLLRLAIVGENADELGLRIAERHGLVATSMDGLMKGRKGRKTDNVKAKAAAEWLGTCPASTGG-VLTGFPTTATQAELLEKQGVGVEQL-VLLERAGA--APEEAANESEGGEL-------------HLLTSRLEGKVVKLPSQQDVDSLCDSAASLLAASGGQQRSSA---ALRDVDDAPAPPAKAAETSALPPSTLRDADMMMSPSELAVARAEAADPEPEGVEAADHRRARSRAGAKAKRAEKAAIRRKKRMANEAQQLDTPFYVAVAQGGPKARFRPPVPMVPSRITERLSSAASPGSGEXXXXXXXXAAVNTRLDFGPLVLDSPASDCLLAAGITEPTGIQQAGMGPILNGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSTSAAAAASA----------------GVNGERASDKAGGGVSHAPWQLLLALPTRELAVQVAREVVLLSGGLTASVELLVDANTFHDLSKVTAPIVVGSAKVLERRIRKSRPTVREDVLPRIKCIVVDEVDRLVDVLSKHAPAKEAEKRKRHARPIAALLERVLAANGEAQ 546
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: A0A835ZA34_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA34_9STRA) HSP 1 Score: 177 bits (450), Expect = 3.730e-43 Identity = 181/616 (29.38%), Postives = 257/616 (41.72%), Query Frame = 1 Query: 403 TGGLRLAVVGENADE-LGIRLAERYGLAATSMDELMKGRKGRKTDNVKARAASEWLATSGAADGGGILTSFPMTAAQAELLGEQGVDIQQLLVLVARAG-ADGAGDRSSVDXXXXXXXXXXXXXXXXKGRQLLTERLAGRVVKLAGQRDVDSLCDSAASLLALGKRKQRSSGDAXXXXXXXXXXXXXXSAAVRASEPSPMLCDADVTMSPTE--------------------------------------------------RAAALQEAGGLDPTDSDVEDQRARSRVAAESNRAKKEALRRKKRAANDAQRLDTPFYVAVAQGGPKARFRPPVPVIP----------SRITERLASAVPXXXXXXXXXXXXXXANTRLEFGALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREVVLLSGGLTSSVELLVDAGAFRDLSKVTAPIVVGSAKVLERVIRKSRPDVRNDVLPRVKCLVVDEVDRLVDVLSKHAPAREAEKRKRHARPIAALLERVLSASGDAQV 2064 + +R+A++G+ A++ + +A +YG A ++ ++ +KGRKTD VKA A + AA GG +L FP + +AEL G + +L+VL G A G+ +S L R G+VV++ G + A L A+G ++ D AV AS+P ++ L A L SD E+ A + A E++ A N P+Y AVA+ K + S+I ++LAS A+ + FG L L ++CL+ AGI+ P+ IQ A M I GESV+LHA TGSGKTL FLLPLMQR A + P QV++ +PTRELAVQ+ARE VLL GG T V+L +D A L+ V APIVVG+AKVL + ++K+RP R ++L + +V DEVDRLVD LSK+A REA++RKRH RPI LL + + + QV Sbjct: 46 SAAVRVAIIGDCAEDGVASAVAAKYGAEACNVAAALREKKGRKTDKVKATVARH---LADAASGGWVLVGFPNSVPEAELFASSGDNFTKLVVLRTGEGQAAATGEMAS-----------------------LISRFEGQVVEVNGG-------SAEAVLAAIGGASNAANSD-----------------AVVASQPMAPAAPVELEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEQVMLDAAAALPQPPSDAEEGDAAPSPQLSAIEASMESIA----ALNTPAAPSIPWYAAVAKPTKKVKXXXXXXXXXXXXXXXDSAASKIVQQLAST---STGKKLNGDLGTDADASVAFGELELRGAMAECLVKAGISTPSPIQAASMSRIATGESVMLHAETGSGKTLAFLLPLMQR---------------------------------------IAATGANKPLQVMVVVPTRELAVQIAREAVLLGGGATKGVDLFLDQQAGVTLADVKAPIVVGTAKVLAQAVKKTRPSERVELLANLSAVVCDEVDRLVDTLSKYATKREADQRKRHPRPIMPLLTALKTRHPELQV 565
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: A0A7S2Y0L3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0L3_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.470e-21 Identity = 93/297 (31.31%), Postives = 141/297 (47.47%), Query Frame = 1 Query: 1189 DTPFYVAVAQGGPKARFRPPVPVIPSRITERLASAVPXXXXXXXXXXXXXXANTRLEFGALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREVVLLSGGLTSSVELL-------VDAGAFRDLS--------KVTAPIVVGSAKVLERVIRKSRP--DVRNDVLPRVKCLVVDEVDRLVDVLSKHAPAREAEKRKRHARPIAALL 2028 + P+Y+ + P+A P +P+IPSRI E A ++ LEFG L L S + L AGIT P+ IQ M I G + ++HA TGSGKTL +LLPL+ D+ + P Q+++ P RELAVQ+ RE+V+L GG + VEL+ V G R+ + + APIVV +A+ +E ++ S+ + + + L ++ +V+DEVDRL+D L K+A +E +R+ H RP + LL Sbjct: 187 EEPYYMRLKTKTPRAPAAP-LPIIPSRIQEVDAQSLKAMREQVEP----------LEFGPLTLRSSMAAALRQAGITTPSPIQANAMTAIRQGSNAVVHAETGSGKTLAYLLPLLM-------------------------------------DM-----DWSTPRQLLVVAPGRELAVQIGREMVVLLGGRSDLVELVLEGKPKTVQGGNQREKNLASGHPALRTQAPIVVATARQMEIALKTSKKFEEHKTNFLKSIRTVVLDEVDRLIDPLPKYATLKERRQRELHPRPASTLL 430
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: A0A0G4EJG7_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EJG7_VITBC) HSP 1 Score: 95.5 bits (236), Expect = 6.070e-17 Identity = 80/222 (36.04%), Postives = 106/222 (47.75%), Query Frame = 1 Query: 1456 ILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREVVLLSGGLTSS-----------VELLVDAGAF---RDLSKVTAPIVVGSAKVLERVIR-KSRPDVRNDVLPRVKC---------LVVDEVDRLVDVLSKHAPAREAEKRKRHARPIAALLERVLSAS 2049 IL GE V+LH+ TGSGKTL FLLPLM R R GAA E AP + ++ PTRELA+Q+A+E++ L G LT S V L++D R L + + P VVG+A L R +R S ++ L RVK L++DEVDRLV L ++A R+ E RK+H RP + + VL S Sbjct: 4 ILSGEDVLLHSETGSGKTLAFLLPLMVR-------------------------------RLAQARRARGAARERAPMETLVIAPTRELAIQLAQEILELEGALTGSRSNDPLQRPDLVHLVIDDENLPLERTLLRTSCPYVVGTATSLLRALRYDSTASSQHHHLARVKPHRLLQNVRHLIMDEVDRLVSPLGRYATLRDKEVRKKHPRPATVIAQAVLETS 194
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: L1IIC7_GUITC (Helicase ATP-binding domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IIC7_GUITC) HSP 1 Score: 80.9 bits (198), Expect = 3.730e-12 Identity = 64/235 (27.23%), Postives = 108/235 (45.96%), Query Frame = 1 Query: 1357 EFGALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREVVLLSGGLTSSVELLVDAGA--FRD----LSKVTAPIVVGSAKVLERVIRKSRP-DVRNDVLPRVKCLVVDEVDRLVDVLSKHAPAREAEKRKRHARPIAALLERVL 2040 +F L+ + L A G++ P IQ + I+ G SVI+ + TGSGKTL +L+PL R+ G P + ++ PTRELA+Q+ E V G + +++ G F D + K T PIV+ + + ++ R D +L ++ +V+DEVD+L++ L+KHAP ++ + RK H P + +++R+L Sbjct: 130 QFAGLMCTPQVHEKLQAIGVSTPLPIQHVAIPSIMSGRSVIVQSPTGSGKTLAYLMPLFARFEEG-----------------------------------------SKPRRGLIVAPTRELALQILSECVRYRG---AGFGMMIVGGTERFEDQLDKMMKTTCPIVICTPDRYQSILATIRDKDQLQQLLGNLEVMVLDEVDKLLNPLNKHAPLKKVKMRKAHPMPTSLMMQRIL 320
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: A0A8J6C5F0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C5F0_DIALT) HSP 1 Score: 77.4 bits (189), Expect = 3.720e-11 Identity = 73/237 (30.80%), Postives = 106/237 (44.73%), Query Frame = 1 Query: 1366 ALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREVVLLSGGLTSSVELLVDAGAFRDLSKVTAPIVVGSAKVLERVI--RKSRPDVRNDVLPRVKCLVVDEVDRLVDVLSKHAPAREAEKR-----KRHARP----IAALLERVLS 2043 +L + + S LLA GI PT IQ A + GESV+LHA TGSGK+L FLLPL+ R P +E +V++ PTRELAVQ+ + ++ L SV+L + A + TA ++VG+ LE + + ++ + +++ +V+DEVDRL+ V P KR K H P + ALLER S Sbjct: 50 SLPMPAALSAALLARGIRAPTPIQSAAFSRVAGGESVVLHAETGSGKSLAFLLPLLLRLAP----------------------------------------DE----KVLIVAPTRELAVQLGADAAGITAELGGSVQLAIVGTAPTVDALATARVLVGTPAELEYALCGTQHASELAARFVGKLRAVVLDEVDRLLPVTQTFGPQAARAKRASNRAKEHVSPTEVLLLALLERTPS 242
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: UPI001C10BC09 (DEAD/DEAH box helicase n=1 Tax=Anaerotignum sp. MSJ-24 TaxID=2841521 RepID=UPI001C10BC09) HSP 1 Score: 67.0 bits (162), Expect = 4.830e-8 Identity = 60/205 (29.27%), Postives = 95/205 (46.34%), Query Frame = 1 Query: 1357 EFGALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREVVLL---SGGLTSSVELLVDAGAFRDLSKVTAP--IVVGSA-KVLERVIRKSRPDVRNDVLPRVKCLVVDEVDRLVD 1953 +F +L + L G+T+PT +Q++ +G IL+ + I+ A TGSGKTLT+LLP+ DL +A Q ++ PT ELAVQV ++ LL SG S ++ +AG R + K+ I++GSA ++++ + +K P VK +VVDE DR++D Sbjct: 4 DFSSLGISEELISALKKQGVTKPTDVQQSAIGVILEKKDAIVRAETGSGKTLTYLLPIFMNI-----------------------------------DLSLRSA------QCIVLTPTHELAVQVYKQAELLAENSGMDIRSALIIGNAGMARQIEKLKEKPQIIIGSAGRIIDLIEKKKIP------AHTVKTIVVDEADRMLD 161
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: A0A482S317_9ARCH (DEAD/DEAH box helicase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S317_9ARCH) HSP 1 Score: 63.2 bits (152), Expect = 6.840e-8 Identity = 44/136 (32.35%), Postives = 63/136 (46.32%), Query Frame = 1 Query: 1351 RLEFGALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREVVLLSG 1758 ++EF + L P S L GIT+P+ IQ+A + + G S +LHA TG+GKTL +LLP ++R L PP E P Q+V+ PT+ELA+Q+A + L G Sbjct: 67 QMEFAGIKLSPPLSTSLKQLGITKPSPIQQASIASLSSGVSALLHAATGTGKTLAYLLPALKRL---LQIPP----------------------------------NEHKPLQIVIIAPTKELALQIAADAKALLG 165
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: A0A7S1EPT1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPT1_9RHOD) HSP 1 Score: 67.0 bits (162), Expect = 7.640e-8 Identity = 66/235 (28.09%), Postives = 99/235 (42.13%), Query Frame = 1 Query: 1360 FGALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREV-VLLSGGLTSS--VELLVDAGAFRDLSKVTAPIVVGSAKVLERVIRK------SRPDVRNDVLPRVKCLVVDEVDRLVDVLSKHAPAREAEKRKRH--ARPIAALLE 2031 FG L + L GI T IQ+ M + GES++++A TGSGKTL F LPL+ R + + W ++ P+RELA+Q + + LL S V +L + +V P V SA ++ R S RND+L +V+C+V+DE DR++ SK+A +RE KRH +P +L+ Sbjct: 107 FGGLEIPDWIQSSLHEMGIESATDIQERCMESLFRGESLLINAETGSGKTLAFTLPLV--------------------------LDLLRQLRLDSSNESNDQEQTSRHWYGLILAPSRELALQTWKTLETLLKFDKESRIRVSVLFEVSKSDSNERVELPADVASAHIVVATPRALFEQMDSSSTARNDLLTQVRCVVLDEADRMISAASKYARSREQMHAKRHLATKPAVQILD 315
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Match: UPI001108022E (DEAD/DEAH box helicase n=1 Tax=Maricaulis alexandrii TaxID=2570354 RepID=UPI001108022E) HSP 1 Score: 66.6 bits (161), Expect = 8.270e-8 Identity = 61/205 (29.76%), Postives = 90/205 (43.90%), Query Frame = 1 Query: 1354 LEFGALVLDSPASDCLLAAGITEPTGIQKAGMGPILDGESVILHAMTGSGKTLTFLLPLMQRWTPGLLSPPAGXXXXXXXXXXXXXXXXXXXXRGTGGDLGAGAAEEDAPWQVVLALPTRELAVQVAREVVLLSGGLTSSVELLVDAGAFRD----LSKVTAPIVVGSAKVLERVIRKSRPDVRNDVLPRVKCLVVDEVDRLVDV 1956 + F L L S + + AG TEPT IQ + P L G+ V+ A TG+GKT +F LPL++R L G A+ P +++A PTRELA QVA S G S+ LL+ AF+ L+K ++ ++L+ R ++ V+ LVVDE DR++D+ Sbjct: 1 MTFAELGLSSKLLEAIETAGYTEPTPIQAGAIPPALAGKDVLGIAQTGTGKTASFTLPLIER-------------------------------------LSRGRAKARMPRSLIIA-PTRELAAQVAENFETYSKGQKLSMALLIGGVAFKPQEEILNKGADVLIATPGRLLDHFERGKL------LMSGVQFLVVDEADRMLDM 161 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig598.14479.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig598.14479.1 >prot_L-elsbetiae_contig598.14479.1 ID=prot_L-elsbetiae_contig598.14479.1|Name=mRNA_L-elsbetiae_contig598.14479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=690bp LLVRAAKGRISELQWLFSLQATMRLLSAAGGVLFAVNHVVGFAVRPTANRback to top mRNA from alignment at L-elsbetiae_contig598:604..6127- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig598.14479.1 ID=mRNA_L-elsbetiae_contig598.14479.1|Name=mRNA_L-elsbetiae_contig598.14479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5524bp|location=Sequence derived from alignment at L-elsbetiae_contig598:604..6127- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig598:604..6127- >mRNA_L-elsbetiae_contig598.14479.1 ID=mRNA_L-elsbetiae_contig598.14479.1|Name=mRNA_L-elsbetiae_contig598.14479.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4140bp|location=Sequence derived from alignment at L-elsbetiae_contig598:604..6127- (Laminarionema elsbetiae ELsaHSoW15)back to top |