mRNA_L-elsbetiae_contig5973.14470.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5973.14470.1
Unique NamemRNA_L-elsbetiae_contig5973.14470.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5973.14470.1 vs. uniprot
Match: D7G4A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4A3_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.040e-54
Identity = 98/106 (92.45%), Postives = 100/106 (94.34%), Query Frame = 1 
Query:   13 FGGAEAASQARSRRVDDLLRSGRVQFAGVPVTREASALLKLHQTLVKHFEHLELHDRGLWSTVVLVLRARSDVYEVQVHVGGPVLVIPEKFSARNLVRFLSEVLLS 330
            FGGAEAASQARSRRVDDLLRSGRVQFAGVPV REA+ALL+LHQTLVKHFEH ELHDRGLWSTVVLVLRARSD YEVQVH GGPVLV PEKFS RNLVRFLSEVLLS
Sbjct:  107 FGGAEAASQARSRRVDDLLRSGRVQFAGVPVYREAAALLRLHQTLVKHFEHFELHDRGLWSTVVLVLRARSDSYEVQVHSGGPVLVFPEKFSERNLVRFLSEVLLS 212
[Close]
BLAST of mRNA_L-elsbetiae_contig5973.14470.1 vs. uniprot
Match: D7G1D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D8_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 1.310e-52
Identity = 97/108 (89.81%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    7 RGFGGAEAASQARSRRVDDLLRSGRVQFAGVPVTREASALLKLHQTLVKHFEHLELHDRGLWSTVVLVLRARSDVYEVQVHVGGPVLVIPEKFSARNLVRFLSEVLLS 330
            R FGGAEA+SQARSRRVDDLLRSGRVQFAGVPV+REA+ALL+LHQTLVKHFEHLELHDRGLWSTVVLVLRARS+ YEVQVH GGPVLV PEKFS R+LVRFLSEVLLS
Sbjct:  224 RRFGGAEASSQARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHQTLVKHFEHLELHDRGLWSTVVLVLRARSESYEVQVHSGGPVLVFPEKFSERSLVRFLSEVLLS 331
[Close]
BLAST of mRNA_L-elsbetiae_contig5973.14470.1 vs. uniprot
Match: A0A6H5JN32_9PHAE (DUF4460 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN32_9PHAE)

HSP 1 Score: 192 bits (487), Expect = 1.790e-52
Identity = 98/108 (90.74%), Postives = 103/108 (95.37%), Query Frame = 1 
Query:    7 RGFGGAEAASQARSRRVDDLLRSGRVQFAGVPVTREASALLKLHQTLVKHFEHLELHDRGLWSTVVLVLRARSDVYEVQVHVGGPVLVIPEKFSARNLVRFLSEVLLS 330
            R FGGAEAASQARSRRVDDLLRSGRVQFAGVPV+REA+ALL+LH+TLVKHFEHLELHDRGLWSTVVLVLRARS+ YEVQVH GGPVLV PEKFS RNLVRFLSEVLLS
Sbjct:  288 RRFGGAEAASQARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHRTLVKHFEHLELHDRGLWSTVVLVLRARSESYEVQVHSGGPVLVFPEKFSERNLVRFLSEVLLS 395
[Close]
BLAST of mRNA_L-elsbetiae_contig5973.14470.1 vs. uniprot
Match: A0A835YNW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW8_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.930e-6
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    4 GRGFGGAEAASQARSRRVDDLLRSGRVQFAGVPVTREASALLKLHQTLVKHFEHLELHDRGLWSTVVLVL 213
            G G  G     +AR+RR +D LRSGRV F GV +  +A AL +LH  LV  +E L L D  LW++  +VL
Sbjct:  233 GAGALGGGGIFEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVL 302
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5973.14470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G4A3_ECTSI1.040e-5492.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1D8_ECTSI1.310e-5289.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JN32_9PHAE1.790e-5290.74DUF4460 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835YNW8_9STRA5.930e-645.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5973contigL-elsbetiae_contig5973:6026..9079 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001930.1
Exons4
Model size1511
Cds size339
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5973.14470.1prot_L-elsbetiae_contig5973.14470.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5973 6026..7808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.490556-CDS-L-elsbetiae_contig5973:6025..60791622816647.490556-CDS-L-elsbetiae_contig5973:6025..6079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 6026..6079 +
1691683710.2880402-CDS-L-elsbetiae_contig5973:6025..60791691683710.2880402-CDS-L-elsbetiae_contig5973:6025..6079Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 6026..6079 +
1622816647.5021112-CDS-L-elsbetiae_contig5973:7177..73061622816647.5021112-CDS-L-elsbetiae_contig5973:7177..7306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 7178..7306 +
1691683710.298639-CDS-L-elsbetiae_contig5973:7177..73061691683710.298639-CDS-L-elsbetiae_contig5973:7177..7306Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 7178..7306 +
1622816647.5119658-CDS-L-elsbetiae_contig5973:7652..78081622816647.5119658-CDS-L-elsbetiae_contig5973:7652..7808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 7653..7808 +
1691683710.3100314-CDS-L-elsbetiae_contig5973:7652..78081691683710.3100314-CDS-L-elsbetiae_contig5973:7652..7808Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5973 7653..7808 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816647.5227258-UTR-L-elsbetiae_contig5973:7808..80621622816647.5227258-UTR-L-elsbetiae_contig5973:7808..8062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5973 7809..8062 +
1691683710.31979-UTR-L-elsbetiae_contig5973:7808..80621691683710.31979-UTR-L-elsbetiae_contig5973:7808..8062Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5973 7809..8062 +
1622816647.535407-UTR-L-elsbetiae_contig5973:8162..90791622816647.535407-UTR-L-elsbetiae_contig5973:8162..9079Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5973 8163..9079 +
1691683710.330413-UTR-L-elsbetiae_contig5973:8162..90791691683710.330413-UTR-L-elsbetiae_contig5973:8162..9079Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5973 8163..9079 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5973.14470.1

>prot_L-elsbetiae_contig5973.14470.1 ID=prot_L-elsbetiae_contig5973.14470.1|Name=mRNA_L-elsbetiae_contig5973.14470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
KGRGFGGAEAASQARSRRVDDLLRSGRVQFAGVPVTREASALLKLHQTLV
KHFEHLELHDRGLWSTVVLVLRARSDVYEVQVHVGGPVLVIPEKFSARNL
VRFLSEVLLSCS*
back to top

mRNA from alignment at L-elsbetiae_contig5973:6026..9079+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5973.14470.1 ID=mRNA_L-elsbetiae_contig5973.14470.1|Name=mRNA_L-elsbetiae_contig5973.14470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3054bp|location=Sequence derived from alignment at L-elsbetiae_contig5973:6026..9079+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGGCGGGGATTTGGGGGCGCCGAGGCCGCTTCTCAGGCGAGGTCTCG
ACGGGTGAGTGCCGGTTTTGGCGTGGAGTTGGATATACCGTAATCGTCTC
CAAGTTCCCCCCGGGGAGGGGATCTTTTTTTTTTGTGAATGCACACCCCC
CCCGGGGGAAACTCGAAAAGGGGGGGGAATCTTTTTTAACCGTGACACTA
CCCCCGGGGGGAGATATACCCCGGGGGGAAGAACAAAAAAACAACACACA
CATACATACCTACATACGGTACACAGCAAGATGCACAAGGTTTGCGAGCA
GCAGTACAAAGGAACAGGGGGGAGGAGGAGAAGGTTAGGGAAGAAGAGGA
GGAAGAGGAGGAGAACACGTGGGGATGCTTGGGCCGTCCCAAAGGTGGTG
GACCCTCCACCAAAAAGAAGAGAGGTCCGGCTAGCAGAGAGTACCCTGAC
CCGCGGTGTATCGGAATGTTGAGTCTGCCGTTGTGGTTTTTGTCCGTACG
CGTGGTTATTTTTTTGCAGACTGGTGTCTGAATCAAAACCAAAACACTTC
GATGATGACATTTCGTGGTGCTCGATGTGACTTGATGCACACGGTGGAGT
CACGCACTCGTACTGCCGACAACAGGCAATGTATTCCATCCCAATTAATG
CTTCTTGGTGGTAAAATTTACCATGTCAAGTGAGGAAAAATCTGGGAAAA
ATACCTACCCCCCCGAGGGGATCTCACCGCAGAATAAAACCCCGGGGGGA
ACTCGAAAAGGGGGGGGGGGGAGGTTGTGACAAAAGCAATCCCCCCCGGG
GGGAACTCAGAGAAATCATGCTTCCAGGCCGAAAAGGGGGTTGGGGGGGG
GGGGACCCAAAAGGGGGGGGGTTCTTGGAGACGATTAAGGTACTCGGCCT
GTCCACTTGGCATCTGTTGTTTGTTTTTGCTTTTTCTCCTCCGTCTGCTT
CGTGGTGTATGTCGCTGGGGTCTTATCGCGTGTTGTTGTCTTTAGGCGCA
CCTGCATTTTTTTTTGCGTTTTTCTACAATGAATGGCGGTTTTGATCGCC
TTGCTCGCTTCCCGCTTTTCCACCAGAAAGACCCTCAACTGGCGGGGACG
AGGGGGGGGGGGGGGGCACTAATCCAAGCAAAACCCGGTGATGTTTTTTC
AGGTGGACGATCTCTTGCGAAGCGGAAGGGTGCAGTTTGCGGGAGTGCCT
GTGACCCGGGAGGCGTCGGCTCTGCTGAAGCTGCACCAGACCCTCGTGAA
GCACTTCGAGCACTTGGAGCTGCACGATAGGGTGGGTGGGCCCTGTTGCT
GTGGTTGCTGTTGTTGTTGCTGGTGTCGCTGTTGTTATCGCTGTTGTTAT
CGCTGTCGTCGTCGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCG
CTGCTGCTGCTGTCGCTGTTGTTTCTGATGCTGTTGCTTTGCTGTTGCCG
GTTGGCATTTTTTTATCTCGGCGCGGGCCGCGCGCTCCCCTCCAATATCT
AACCCACTACCGCCGCTCTGTCCTCGCCGATTCTACCTCCCACCCCCCTC
TCCTTCTTGCTCTCTCTGGTGTGCCCCCCCTCTCCGTCCCCCTTGTGCCT
ACGGTCCATCCCGGCTCTTCCTTGTAGGGCCTGTGGAGCACCGTGGTTCT
GGTTTTGAGGGCGAGGTCGGACGTCTACGAGGTTCAGGTGCACGTGGGCG
GGCCCGTCCTTGTGATCCCCGAGAAGTTTTCCGCGAGGAACCTAGTGAGG
TTCTTGTCGGAAGTGTTGCTGTCGTGTAGCTAGTCCCAGCGGCGGTGTCG
ACACTGCGGTCCGCCGGCTCAAATAGTGGTTAGTTTTCAAGTCTCGTTAC
CTTTGAGAAATTAATCAAAATACGGGTTTTTGGGGAAATGCTTAATTTTT
GTTCGAATTTTTTCAATATTGGGGTTGATTAAACTTCAGCGGTGCTGCCG
TATAGCTAGTAGCTCCAGCGGCGGCGTCGGCACTGCGGTCCGCCGGTTCG
GCTAGTGTAGTGTCGACACTTTTCTATATGCCTCCAGGCGACTGATTGGT
CTGGTAGGGTCTATCTACTGCTGTAGGCGGCACTGCGGTCCGCCGGTTCG
GCTAGTGTAGTGTCGACACTTTTCTATATGCCTCCAGGCGACTGATTGGT
CTGGTAGGGTCTATCTACTGCTGTAGGCGGGGAGCGCCCCAGAAGCGTCC
CTCGACGACGGCTCCTACTGTCCGAAAGCCACCAGGGCGAAGCAGGACGG
GTCACTGCAGCGACCGGTGCAGCTACCCCCCACCGTCTGCCTCTGACGGC
CTTCAAGCCGTGGGGGCGTGATTTAGGGACGTTTCTGCCCAAGACGCCGG
CTGTGGCCCACCGCCGGACCACCTCGTCTAGGTGGTCCGCTACCTGCTGC
CGGCGGGACAACAAGGACGACCCGTCCCCGTCCTCCCGCAAGTTCTCGGC
GAACAAGCTGCGTTTATGTAAACATAACAGGCAGGCACCGCAGGAGGGGG
TCCATCCCCACCCTCGTGTATGGCCCCGGTTTAATCGTCTAGCTAGTCGT
AGTGGAGTATGGGGGCCAGTGGGGCAGACGACAAATATGCAATAATGGGA
GGAAAATAAATGCACGTAGGATATTGATATGTGTGTACGTGTGTTCTTAA
TGCATGGCTGGAGTCGCTGTGTCGGTCCGGTCCGCGTCCGGGGACCTCTT
CTTTGTGTGTGGCCATTGATTCCCTTGGAATTCTTCGGGGAAGTTGTTAT
TCAGTGAGCACTTTTTTATGGCAGATAGTTCCCGTGGTGGAGAATTCCGG
GGACGCTAGCTTCAGAGTGAGCGCTTGTTTTTTCTGGCGATTCGCTTGGA
ATATTCCGGGGACGTTACCTTGAGTGAGCGCTTCTCCGCCGAGAAAGCGT
CGCCGTGCGTGCAGCCGTTGGTATGTAGTGGCACCCGCCATACCCATGGA
CCGGGATTCCGTGCATGAGAGCAACCTGCCTTGCCGGAACTGCTCTTGCC
GGAACTGCTCCAAGTTTGCCGGAGTATACTAACGGCGTGGAATTTCGTGA
GGAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5973:6026..9079+

>mRNA_L-elsbetiae_contig5973.14470.1 ID=mRNA_L-elsbetiae_contig5973.14470.1|Name=mRNA_L-elsbetiae_contig5973.14470.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig5973:6026..9079+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGGGCGGGGATTTGGGGGCGCCGAGGCCGCTTCTCAGGCGAGGTCTCG
ACGGAAGGGGCGGGGATTTGGGGGCGCCGAGGCCGCTTCTCAGGCGAGGT
CTCGACGGGTGGACGATCTCTTGCGAAGCGGAAGGGTGCAGTTTGCGGGA
GTGCCTGTGACCCGGGAGGCGTCGGCTCTGCTGAAGCTGCACCAGACCCT
CGTGAAGCACTTCGAGCACTTGGAGCTGCACGATAGGGTGGACGATCTCT
TGCGAAGCGGAAGGGTGCAGTTTGCGGGAGTGCCTGTGACCCGGGAGGCG
TCGGCTCTGCTGAAGCTGCACCAGACCCTCGTGAAGCACTTCGAGCACTT
GGAGCTGCACGATAGGGGCCTGTGGAGCACCGTGGTTCTGGTTTTGAGGG
CGAGGTCGGACGTCTACGAGGTTCAGGTGCACGTGGGCGGGCCCGTCCTT
GTGATCCCCGAGAAGTTTTCCGCGAGGAACCTAGTGAGGTTCTTGTCGGA
AGTGTTGCTGTCGTGTAGCTAGGGCCTGTGGAGCACCGTGGTTCTGGTTT
TGAGGGCGAGGTCGGACGTCTACGAGGTTCAGGTGCACGTGGGCGGGCCC
GTCCTTGTGATCCCCGAGAAGTTTTCCGCGAGGAACCTAGTGAGGTTCTT
GTCGGAAGTGTTGCTGTCGTGTAGCTAG
back to top