prot_L-elsbetiae_contig5967.14463.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5967.14463.1
Unique Nameprot_L-elsbetiae_contig5967.14463.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length122
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5967.14463.1 vs. uniprot
Match: D7G3W0_ECTSI (ERCC4 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W0_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.700e-48
Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = 0 
Query:    1 RELDAGAVSEKDRMVDVFDLVLIVDCSEKRDKVRAPIHSTLQSFLSQRSLSRAGLATAVPPGGIGLEMQVAKLQVGDFAWAWRRKRSGVRGTAIDAGVQKEVLMLDCVVERKKDEDIVGSVE 122
            RELDAGA+S KDRMVD FDLVLIVD  E+RDKVRAPI   L+ FLSQ S  RAGLA A P G +GLEMQVA+LQ GDFAWAWRR+RSG RGT +  G  +E+L+LDC+VERKK++DI+ SVE
Sbjct:   92 RELDAGALSGKDRMVDAFDLVLIVDLGEQRDKVRAPIRDKLERFLSQLSPRRAGLAAASPTGVVGLEMQVARLQTGDFAWAWRRRRSGSRGTDLLTGPSEELLLLDCLVERKKEDDIINSVE 213
[Close]
BLAST of mRNA_L-elsbetiae_contig5967.14463.1 vs. uniprot
Match: A0A6H5K3W4_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.490e-26
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 0 
Query:   44 FLSQRSLSRAGLATAVPPGGIGLEMQVAKLQVGDFAWAWRRKRSGVRGTAIDAGVQKEVLMLDCVVERKKDEDIVGSVE 122
            FLSQ S  RAGLA   P G +GLEM+VA+LQ GDFAWAWRR+RSGVRGT +  G  +EVL+LDC+VERKK++D++ SVE
Sbjct:    4 FLSQLSPRRAGLAAVSPTGVVGLEMRVARLQTGDFAWAWRRRRSGVRGTNLLTGSSEEVLLLDCLVERKKEDDMINSVE 82
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5967.14463.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3W0_ECTSI1.700e-4869.67ERCC4 domain containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K3W4_9PHAE1.490e-2665.82ERCC4 domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.40.50.10130coord: 70..122
e-value: 4.7E-7
score: 31.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5967contigL-elsbetiae_contig5967:357..2501 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5967.14463.1mRNA_L-elsbetiae_contig5967.14463.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5967 357..2501 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5967.14463.1 ID=prot_L-elsbetiae_contig5967.14463.1|Name=mRNA_L-elsbetiae_contig5967.14463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
RELDAGAVSEKDRMVDVFDLVLIVDCSEKRDKVRAPIHSTLQSFLSQRSL
SRAGLATAVPPGGIGLEMQVAKLQVGDFAWAWRRKRSGVRGTAIDAGVQK
EVLMLDCVVERKKDEDIVGSVE
back to top