mRNA_L-elsbetiae_contig5967.14463.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_L-elsbetiae_contig5967.14463.1
Unique Name	mRNA_L-elsbetiae_contig5967.14463.1
Type	mRNA
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig5967.14463.1 vs. uniprot
Match: D7G3W0_ECTSI (ERCC4 domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3W0_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.700e-48
Identity = 85/122 (69.67%), Postives = 99/122 (81.15%), Query Frame = 1

Query:    1 RELDAGAVSEKDRMVDVFDLVLIVDCSEKRDKVRAPIHSTLQSFLSQRSLSRAGLATAVPPGGIGLEMQVAKLQVGDFAWAWRRKRSGVRGTAIDAGVQKEVLMLDCVVERKKDEDIVGSVE 366
            RELDAGA+S KDRMVD FDLVLIVD  E+RDKVRAPI   L+ FLSQ S  RAGLA A P G +GLEMQVA+LQ GDFAWAWRR+RSG RGT +  G  +E+L+LDC+VERKK++DI+ SVE
Sbjct:   92 RELDAGALSGKDRMVDAFDLVLIVDLGEQRDKVRAPIRDKLERFLSQLSPRRAGLAAASPTGVVGLEMQVARLQTGDFAWAWRRRRSGSRGTDLLTGPSEELLLLDCLVERKKEDDIINSVE 213

[Close]

BLAST of mRNA_L-elsbetiae_contig5967.14463.1 vs. uniprot
Match: A0A6H5K3W4_9PHAE (ERCC4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W4_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.490e-26
Identity = 52/79 (65.82%), Postives = 64/79 (81.01%), Query Frame = 1

Query:  130 FLSQRSLSRAGLATAVPPGGIGLEMQVAKLQVGDFAWAWRRKRSGVRGTAIDAGVQKEVLMLDCVVERKKDEDIVGSVE 366
            FLSQ S  RAGLA   P G +GLEM+VA+LQ GDFAWAWRR+RSGVRGT +  G  +EVL+LDC+VERKK++D++ SVE
Sbjct:    4 FLSQLSPRRAGLAAVSPTGVVGLEMRVARLQTGDFAWAWRRRRSGVRGTNLLTGSSEEVLLLDCLVERKKEDDMINSVE 82

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5967.14463.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5967.14463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7G3W0_ECTSI	1.700e-48	69.67	ERCC4 domain containing protein n=1 Tax=Ectocarpus...	[more]
A0A6H5K3W4_9PHAE	1.490e-26	65.82	ERCC4 domain-containing protein n=1 Tax=Ectocarpus...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5967	contig	L-elsbetiae_contig5967:357..2501 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	169.9
Seed ortholog evalue	7.6e-40
Seed eggNOG ortholog	2880.D7G3W0
Preferred name	Mus81
KEGG ko	ko:K08991
KEGG Pathway	ko03440,ko03460,map03440,map03460
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000075,GO:0000077,GO:0000228,GO:0000278,GO:0000280,GO:0000712,GO:0000724,GO:0000725,GO:0000727,GO:0000793,GO:0000794,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007093,GO:0007095,GO:0007127,GO:0007129,GO:0007131,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0016043,GO:0016787,GO:0016788,GO:0016889,GO:0016894,GO:0022402,GO:0022414,GO:0022607,GO:0031297,GO:0031570,GO:0031572,GO:0031573,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035825,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044818,GO:0045005,GO:0045132,GO:0045143,GO:0045786,GO:0045930,GO:0046483,GO:0048256,GO:0048257,GO:0048285,GO:0048476,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051026,GO:0051276,GO:0051304,GO:0051307,GO:0051321,GO:0051716,GO:0051726,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0098813,GO:0140013,GO:0140097,GO:1901360,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903046,GO:1903047
EggNOG free text desc.	resolution of meiotic recombination intermediates
EggNOG OGs	COG1948@1,KOG2379@2759
COG Functional cat.	L
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko03400
Ec32 ortholog description	ERCC4 domain containing protein
Ec32 ortholog	Ec-01_005900.1
Exons	4
Model size	366
Cds size	366
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5967.14463.1	prot_L-elsbetiae_contig5967.14463.1	Laminarionema elsbetiae ELsaHSoW15	polypeptide	L-elsbetiae_contig5967 357..2501 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622816646.8229048-CDS-L-elsbetiae_contig5967:356..500	1622816646.8229048-CDS-L-elsbetiae_contig5967:356..500	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5967 357..500 -
1691683709.754608-CDS-L-elsbetiae_contig5967:356..500	1691683709.754608-CDS-L-elsbetiae_contig5967:356..500	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5967 357..500 -
1622816646.8382401-CDS-L-elsbetiae_contig5967:868..962	1622816646.8382401-CDS-L-elsbetiae_contig5967:868..962	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5967 869..962 -
1691683709.7657027-CDS-L-elsbetiae_contig5967:868..962	1691683709.7657027-CDS-L-elsbetiae_contig5967:868..962	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5967 869..962 -
1622816646.850691-CDS-L-elsbetiae_contig5967:1711..1805	1622816646.850691-CDS-L-elsbetiae_contig5967:1711..1805	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5967 1712..1805 -
1691683709.7756102-CDS-L-elsbetiae_contig5967:1711..1805	1691683709.7756102-CDS-L-elsbetiae_contig5967:1711..1805	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5967 1712..1805 -
1622816646.8613915-CDS-L-elsbetiae_contig5967:2467..2501	1622816646.8613915-CDS-L-elsbetiae_contig5967:2467..2501	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5967 2468..2501 -
1691683709.7854712-CDS-L-elsbetiae_contig5967:2467..2501	1691683709.7854712-CDS-L-elsbetiae_contig5967:2467..2501	Laminarionema elsbetiae ELsaHSoW15	CDS	L-elsbetiae_contig5967 2468..2501 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at L-elsbetiae_contig5967:357..2501-
coding sequence from alignment at L-elsbetiae_contig5967:357..2501-

protein sequence of mRNA_L-elsbetiae_contig5967.14463.1

>prot_L-elsbetiae_contig5967.14463.1 ID=prot_L-elsbetiae_contig5967.14463.1|Name=mRNA_L-elsbetiae_contig5967.14463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
RELDAGAVSEKDRMVDVFDLVLIVDCSEKRDKVRAPIHSTLQSFLSQRSL
SRAGLATAVPPGGIGLEMQVAKLQVGDFAWAWRRKRSGVRGTAIDAGVQK
EVLMLDCVVERKKDEDIVGSVE

mRNA from alignment at L-elsbetiae_contig5967:357..2501-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_L-elsbetiae_contig5967.14463.1 ID=mRNA_L-elsbetiae_contig5967.14463.1|Name=mRNA_L-elsbetiae_contig5967.14463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2145bp|location=Sequence derived from alignment at L-elsbetiae_contig5967:357..2501- (Laminarionema elsbetiae ELsaHSoW15)
AGGGAGCTGGACGCGGGCGCAGTGAGCGAGAAAGGTAAACACAGACGACA
GCAGTATCATAGTGCGCCGTGAAAATGTGTGGTGGTGTTTGTGTGGGTGC
GCGGTACGCCGCGGAGTTTTCGACCCTGTCTGTTCTTTGTTTTGTGGTTC
TCAGGGCGTGGTTTCCGCTGCATGGGTGCAAAGGGTTGGTGTAATTGCAT
CGGATTGGCCTCGTTTAAGTGGGAGGCAGGGAGAATGTGGAGTGCGAGAG
CTCTCTACCTATGTGGATGTATCTACACCCACCCGTGTTCTGCCCCGCGG
GTTTACCTACCTCCGTCGGTCGGCGTTTTTCTTCACCCGCGGCGCCCCCC
CCCCCCCCCCCCCCCGCGGGGCTTTTTTTTTTTGGGGGGGGTGGCGTCCT
TCTCGGAGACACACACACTNNNNNNNNNNGGGTTTGTCTGACCACCCCCG
GGTTCGCTCCCCGGGGGTGTCCGCCCCCCCTGGGGGGGGGGTTTTTTTCC
CCCCGGGGGCCCCCCCCCCCCCCCCCCCCTCCGATGGTGTATTATGTCTT
GTGGGTGGTTGTCGTTCGTTCGCGAGTACATACATATGTTCCCCCGTAAT
AACCTTGTTGTGTTTGGTGTGTTGGCTGTGTCGGAAGAACGAACGCCCCG
AAGAAGTCTGATCGACCGTCTGTCTCCCTGTTGGGCCGCGCGCCAGATCG
AATGGTGGATGTTTTCGACCTGGTGCTGATCGTGGACTGCTCCGAGAAAC
GCGACAAAGTGAGGGCTCCCATCCACTCCACGCTGCAAAGGTGAAGGAGG
GGGTGGGGGTGGGGGTGACAGGGTTTCCACGCCATGTTCTGTACTTCTAA
GCGCCGGAAGACATCAGCAAACCTCAGCAGAAACAAATGGCATGCCGCTA
GTACCGCGGCCAAGGCAAAGGGGCAGACAGCAAGCACCGCCGCTCCGCCG
GCAAGCACCGAAAAGTAATGAAGAAGCATTAACAGTTGCATTAATGACGC
AAAAGTTCAGCGATGCCGCATGGGGGGTAAAATTCAGGAGATGGACAATT
GCTACATACTTGAGGAATTATTGTTGAGTAATTTTCATTGAAAGTTTTAC
ATTGTCAGGCAGTTTGTGCAGCAACCCCTCTTGACAAGGACTCAGCCGTG
CTGTTAAAAAAAAACGATCACGGAGGAAGCAAGCACCGTCTACAACTTTT
TCAGGATTCAAAGCGTGTGTAAATTGAAATGCTCGAGAGAAAGTTAGGAG
AATAATATTACGTTTCTCAGGATTGAAGTGTGCGTAATTTAATGTACATA
TTCGAGAGAGCTCAGAGAATAATGTATTTTTTTTTTCAGGATTTAAAAGC
GTGTCACGTGAAATGCTCGTGAAAAAGTTTGGAGAAGAAAACAGCAGTAA
ATACTCCGTAGTAGTTGTTTTTTACGCAAAAAGGCGCTTCCTTGACATCA
CGGGGACACTGACGGGGTGAGCGGCTGGATGCCTTGCGCTGTCTCCTTTT
ACTGCTTTGCGTCGTGTCACCTGCCGCTCTTTTGCGCAGCTTCCTGTCCC
AGCGATCTCTCAGCCGAGCAGGGCTAGCCACCGCCGTGCCTCCCGGAGGC
ATCGGGCTGGAAATGCAAGTCGCGAAGCTCCAGGTGAAGATTTTTAGCGA
ACAAAATACTGCCGTGCCCCCTCTCGGCGTCGGGATCCTCTCTTTGCCGT
CTGTCTGCGTCGCTCGGAGGTCGTGAATGTATGACGCGGGACCTTCAAAG
CGAGCGAAAAAAAGAGGTCCATTTTCCAATATGTTGGGGGTGTTTTGACG
CTGCTGTGGCGTGGTCTATAGCCTGGGCGCGCCCTTCTCTTGGTGCCTTT
GCCGCATTTGTTTTTTTCTCTGTTTTTTTTTTTTAATGTTTTCGCGTTCT
TTTGAGATGTACAACCTACATGTAACTCATACATATATATGTATTATGCA
AACCTGGTAACTACTGTTGTGAGTCGGTTTCTTTGATGGTTATTTTACCA
GGTTGGCGACTTTGCGTGGGCGTGGAGGAGAAAGAGGAGCGGCGTTCGCG
GGACGGCGATCGACGCCGGGGTGCAGAAAGAGGTGCTGATGCTGGACTGC
GTGGTGGAGAGGAAGAAAGATGAGGACATCGTCGGAAGCGTCGAG

Coding sequence (CDS) from alignment at L-elsbetiae_contig5967:357..2501-

>mRNA_L-elsbetiae_contig5967.14463.1 ID=mRNA_L-elsbetiae_contig5967.14463.1|Name=mRNA_L-elsbetiae_contig5967.14463.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig5967:357..2501- (Laminarionema elsbetiae ELsaHSoW15)
AGGGAGCTGGACGCGGGCGCAGTGAGCGAGAAAGAGGGAGCTGGACGCGG
GCGCAGTGAGCGAGAAAGATCGAATGGTGGATGTTTTCGACCTGGTGCTG
ATCGTGGACTGCTCCGAGAAACGCGACAAAGTGAGGGCTCCCATCCACTC
CACGCTGCAAAGATCGAATGGTGGATGTTTTCGACCTGGTGCTGATCGTG
GACTGCTCCGAGAAACGCGACAAAGTGAGGGCTCCCATCCACTCCACGCT
GCAAAGCTTCCTGTCCCAGCGATCTCTCAGCCGAGCAGGGCTAGCCACCG
CCGTGCCTCCCGGAGGCATCGGGCTGGAAATGCAAGTCGCGAAGCTCCAG
CTTCCTGTCCCAGCGATCTCTCAGCCGAGCAGGGCTAGCCACCGCCGTGC
CTCCCGGAGGCATCGGGCTGGAAATGCAAGTCGCGAAGCTCCAGGTTGGC
GACTTTGCGTGGGCGTGGAGGAGAAAGAGGAGCGGCGTTCGCGGGACGGC
GATCGACGCCGGGGTGCAGAAAGAGGTGCTGATGCTGGACTGCGTGGTGG
AGAGGAAGAAAGATGAGGACATCGTCGGAAGCGTCGAGGTTGGCGACTTT
GCGTGGGCGTGGAGGAGAAAGAGGAGCGGCGTTCGCGGGACGGCGATCGA
CGCCGGGGTGCAGAAAGAGGTGCTGATGCTGGACTGCGTGGTGGAGAGGA
AGAAAGATGAGGACATCGTCGGAAGCGTCGAG