mRNA_L-elsbetiae_contig5965.14461.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5965.14461.1
Unique NamemRNA_L-elsbetiae_contig5965.14461.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: D7FUN7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUN7_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 4.580e-47
Identity = 85/94 (90.43%), Postives = 91/94 (96.81%), Query Frame = 1
Query:    1 LLETVERAFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGFQEAVMPFLLERAQSKKLTQGEMRAMFDEIDTER 282
            LLETVERAFAFYD+DNSNSIDATEVV+ILRALGHD TRGESRALLRKANVDRNGGV+F+GFQEAVMPFLLER +SKKLT+GEMRAMFDEIDT R
Sbjct:  976 LLETVERAFAFYDQDNSNSIDATEVVSILRALGHDPTRGESRALLRKANVDRNGGVEFDGFQEAVMPFLLERTKSKKLTEGEMRAMFDEIDTNR 1069          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: A0A835YK05_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK05_9STRA)

HSP 1 Score: 101 bits (252), Expect = 4.720e-23
Identity = 56/118 (47.46%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    1 LLETVERAFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQ-------------------------FEGFQEAVMPFLLERAQSKKLTQGEMRAMFDEIDTE 279
            +++ +E+AF+FYD DNSNSID  EV +ILRALGHD TR E RA++R A+ DRNG +Q                         FE FQEAVMP++LE+  + +LT+ E+RAMF+ IDT+
Sbjct:  442 IVQALEKAFSFYDVDNSNSIDVREVESILRALGHDPTRKELRAVMRSADRDRNGVLQEMLICNXXXXXXXXXXXXXXXXXXQFEEFQEAVMPYVLEKMSNVRLTEVEIRAMFEAIDTD 559          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: A0A0P1ARY6_PLAHL (Camk protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ARY6_PLAHL)

HSP 1 Score: 55.1 bits (131), Expect = 1.040e-6
Identity = 29/89 (32.58%), Postives = 51/89 (57.30%), Query Frame = 1
Query:    7 ETVERAFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGFQEAVMPFLLERAQSKKLTQGEMRAMFDEID 273
            +T +  FA +D+D S  ID  E+  +L+ALG  L+  E  +++R+A+ D +G +QF  F   +   LL R +   L+ G+++  F+  D
Sbjct:  375 DTFKETFALFDKDESGCIDRDELKGMLQALGQQLSSSEIDSIMRQADTDGDGRIQFTEFVSMMNQRLLRRGE---LSNGDLKTAFNIFD 460          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: A0A3M7NPM1_9EURO (Uncharacterized protein (Fragment) n=4 Tax=unclassified Chaetothyriales TaxID=316340 RepID=A0A3M7NPM1_9EURO)

HSP 1 Score: 52.4 bits (124), Expect = 3.460e-6
Identity = 23/60 (38.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   22 AFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGFQEAVMP 201
            AFA +D+D S +I A E+  ++++LG DLT  E   ++R+A+ DR+G + +E F + + P
Sbjct:  110 AFAVFDKDGSGTISADELRQVMKSLGEDLTDAEIDEMIREADKDRDGTIDYEEFVQLLSP 169          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: W9YN98_9EURO (Calmodulin n=1 Tax=Capronia coronata CBS 617.96 TaxID=1182541 RepID=W9YN98_9EURO)

HSP 1 Score: 48.9 bits (115), Expect = 1.370e-5
Identity = 21/60 (35.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   22 AFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGFQEAVMP 201
            AF  +D+D S +I A E+  ++++LG +LT  E   ++R+A+ D+NG + +E F + + P
Sbjct:   18 AFDVFDKDGSGTISADELRQVMKSLGENLTDAEIDEMIREADKDKNGTIDYEEFVQLLSP 77          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: A0A0D1WEH7_9EURO (Uncharacterized protein n=1 Tax=Exophiala sideris TaxID=1016849 RepID=A0A0D1WEH7_9EURO)

HSP 1 Score: 50.8 bits (120), Expect = 1.400e-5
Identity = 22/60 (36.67%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   22 AFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGFQEAVMP 201
            AF  +D+D S +I A E+  ++++LG +LT  E   ++R+A+ DRNG + +E F + + P
Sbjct:  115 AFDVFDKDGSGTISADELRQVMKSLGENLTDAEIEEMIREADKDRNGTIDYEEFVQLLSP 174          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: A0A7S1XK06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XK06_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 1.830e-5
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    1 LLETVERAFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGFQEAVMPFLL 210
            L   +ERAF ++DED SN+I+ +E+ NILR++G  LT  + + L+  A   R G + F+ F   V PF++
Sbjct: 1102 LDAALERAFDYFDEDFSNTINVSELDNILRSVGQVLTEKQLKNLVSAAG-SRRGVLSFDDFYAIVKPFVI 1170          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: A0A2T7PEC9_POMCA (Uncharacterized protein n=1 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7PEC9_POMCA)

HSP 1 Score: 48.5 bits (114), Expect = 3.590e-5
Identity = 20/65 (30.77%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    4 LETVERAFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGFQEAVM 198
            +E +  AF  +D++N + IDA E++ ++ ++G  LT+ E+  ++R A+VD +G + ++ F + +M
Sbjct:   40 MEQILLAFKLFDKNNDDYIDAKELLRVVTSMGERLTQEEAEEMIRVADVDNDGRINYKEFVKFIM 104          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: A0A0B6ZEP5_9EUPU (Uncharacterized protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6ZEP5_9EUPU)

HSP 1 Score: 48.1 bits (113), Expect = 5.060e-5
Identity = 19/54 (35.19%), Postives = 36/54 (66.67%), Query Frame = 1
Query:   22 AFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGF 183
            AF   D +N   IDA E++N++ +LG  L+  E+ A++R A+++++G + +E F
Sbjct:   45 AFKIIDRNNDKFIDANELINVMTSLGEPLSNQEAEAMIRVADINKDGKIDYEEF 98          
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Match: A0A8C4SIW1_ERPCA (Uncharacterized protein n=1 Tax=Erpetoichthys calabaricus TaxID=27687 RepID=A0A8C4SIW1_ERPCA)

HSP 1 Score: 47.0 bits (110), Expect = 6.740e-5
Identity = 23/59 (38.98%), Postives = 36/59 (61.02%), Query Frame = 1
Query:    7 ETVERAFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANVDRNGGVQFEGF 183
            E +  AF  +D+D + SI A E+  ++  LG  LT  E  A++R+A+VD +G V +E F
Sbjct:    8 EEMHEAFNVFDKDGNGSISAAELQQVITNLGEKLTDEEIDAMIREADVDGDGQVNYEDF 66          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5965.14461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FUN7_ECTSI4.580e-4790.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YK05_9STRA4.720e-2347.46Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0P1ARY6_PLAHL1.040e-632.58Camk protein kinase n=1 Tax=Plasmopara halstedii T... [more]
A0A3M7NPM1_9EURO3.460e-638.33Uncharacterized protein (Fragment) n=4 Tax=unclass... [more]
W9YN98_9EURO1.370e-535.00Calmodulin n=1 Tax=Capronia coronata CBS 617.96 Ta... [more]
A0A0D1WEH7_9EURO1.400e-536.67Uncharacterized protein n=1 Tax=Exophiala sideris ... [more]
A0A7S1XK06_9STRA1.830e-540.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2T7PEC9_POMCA3.590e-530.77Uncharacterized protein n=1 Tax=Pomacea canalicula... [more]
A0A0B6ZEP5_9EUPU5.060e-535.19Uncharacterized protein (Fragment) n=1 Tax=Arion v... [more]
A0A8C4SIW1_ERPCA6.740e-538.98Uncharacterized protein n=1 Tax=Erpetoichthys cala... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5965contigL-elsbetiae_contig5965:10825..11647 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.0
Seed ortholog evalue2.6e-40
Seed eggNOG ortholog2880.D7FUN7
Preferred nameMLC2
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0000142,GO:0000910,GO:0000916,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005826,GO:0005856,GO:0005933,GO:0005935,GO:0005938,GO:0006996,GO:0007010,GO:0007049,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0016459,GO:0016460,GO:0017022,GO:0022402,GO:0030029,GO:0030036,GO:0030427,GO:0030863,GO:0030864,GO:0030865,GO:0030866,GO:0031032,GO:0032153,GO:0032155,GO:0032506,GO:0032991,GO:0036213,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0044837,GO:0045159,GO:0051301,GO:0061640,GO:0070938,GO:0071840,GO:0071944,GO:0099568,GO:0110085
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons2
Model size285
Cds size285
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816646.6130521-CDS-L-elsbetiae_contig5965:10824..109381622816646.6130521-CDS-L-elsbetiae_contig5965:10824..10938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 10825..10938 -
1691683709.5912333-CDS-L-elsbetiae_contig5965:10824..109381691683709.5912333-CDS-L-elsbetiae_contig5965:10824..10938Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 10825..10938 -
1622816646.62535-CDS-L-elsbetiae_contig5965:11476..116471622816646.62535-CDS-L-elsbetiae_contig5965:11476..11647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 11477..11647 -
1691683709.6054325-CDS-L-elsbetiae_contig5965:11476..116471691683709.6054325-CDS-L-elsbetiae_contig5965:11476..11647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5965 11477..11647 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5965.14461.1prot_L-elsbetiae_contig5965.14461.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5965 10825..11647 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5965.14461.1

>prot_L-elsbetiae_contig5965.14461.1 ID=prot_L-elsbetiae_contig5965.14461.1|Name=mRNA_L-elsbetiae_contig5965.14461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
LLETVERAFAFYDEDNSNSIDATEVVNILRALGHDLTRGESRALLRKANV
DRNGGVQFEGFQEAVMPFLLERAQSKKLTQGEMRAMFDEIDTER*
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mRNA from alignment at L-elsbetiae_contig5965:10825..11647-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5965.14461.1 ID=mRNA_L-elsbetiae_contig5965.14461.1|Name=mRNA_L-elsbetiae_contig5965.14461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=823bp|location=Sequence derived from alignment at L-elsbetiae_contig5965:10825..11647- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGGAGACGGTCGAGCGAGCGTTCGCCTTTTACGACGAAGACAACAG CAACAGCATCGACGCCACGGAGGTCGTCAACATTCTCAGGGCTCTCGGCC ACGATCTCACCCGCGGGGAGTCTCGGGCGCTGCTGCGAAAGGCGAACGTG GACAGAAACGGAGGAGTTCAGGTTAGGGTCACGCATCTGCACGAACCTAT CATACCCGCTGGGAGGCCAGGGTGGTGAACACACGTAAATCGAGACAATC TGCCCCGATAGCTCGGCTTATCGGTGTCTCGATTGCTTCAGCGGGTTTAA AGCAGCAAGCGGGCGGCATTGATTCAATCGAACTGCTTTCGCGTGCATGT AGATATGTATGTGTGTAATTCTCAGTACTTTTCCCCTTCTTTTGCTTTCG CCCCGGCGCTTCAGAAAAATGTACTGCCCCCGAGTTTTTGAGGTTTGGAG AAGGGTTCTAGGAGACAAACCAGGGCCGCCAATCTTCCTCCTAAGCAACG TACCCTAAATCTACTGAACCTGTGTGAACCTGTGCCTCTTTCGGAGCCTC GTTTCACGCGTCCCTCCCTATCTCTGATATTCCCGACAGACTAGATAAAT CTTTGTCGATCGGTAGTATCCCGAAATGAGCGAACGGTACAGTGCACACA CCCCACGATGACTGACGTGGTCTACCCTAACCATCCTCAAAAACGATTGG ATGACGCAGTTTGAGGGTTTCCAGGAGGCGGTGATGCCCTTCCTTCTCGA GCGTGCGCAATCGAAAAAGCTCACGCAGGGAGAGATGCGCGCCATGTTCG ACGAGATCGACACGGAAAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5965:10825..11647-

>mRNA_L-elsbetiae_contig5965.14461.1 ID=mRNA_L-elsbetiae_contig5965.14461.1|Name=mRNA_L-elsbetiae_contig5965.14461.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig5965:10825..11647- (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGGAGACGGTCGAGCGAGCGTTCGCCTTTTACGACGAAGACAACAG
CAACAGCATCGACGCCACGGAGGTCGTCAACATTCTCAGGGCTCTCGGCC
ACGATCTCACCCGCGGGGAGTCTCGGGCGCTGCTGCGAAAGGCGAACGTG
GACAGAAACGGAGGAGTTCAGCTGCTGGAGACGGTCGAGCGAGCGTTCGC
CTTTTACGACGAAGACAACAGCAACAGCATCGACGCCACGGAGGTCGTCA
ACATTCTCAGGGCTCTCGGCCACGATCTCACCCGCGGGGAGTCTCGGGCG
CTGCTGCGAAAGGCGAACGTGGACAGAAACGGAGGAGTTCAGTTTGAGGG
TTTCCAGGAGGCGGTGATGCCCTTCCTTCTCGAGCGTGCGCAATCGAAAA
AGCTCACGCAGGGAGAGATGCGCGCCATGTTCGACGAGATCGACACGGAA
AGGTGATTTGAGGGTTTCCAGGAGGCGGTGATGCCCTTCCTTCTCGAGCG
TGCGCAATCGAAAAAGCTCACGCAGGGAGAGATGCGCGCCATGTTCGACG
AGATCGACACGGAAAGGTGA
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