mRNA_L-elsbetiae_contig5960.14452.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5960.14452.1
Unique NamemRNA_L-elsbetiae_contig5960.14452.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5960.14452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5960contigL-elsbetiae_contig5960:496..916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size165
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816645.8379297-CDS-L-elsbetiae_contig5960:495..5781622816645.8379297-CDS-L-elsbetiae_contig5960:495..578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5960 496..578 +
1691683709.0376983-CDS-L-elsbetiae_contig5960:495..5781691683709.0376983-CDS-L-elsbetiae_contig5960:495..578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5960 496..578 +
1622816645.8556647-CDS-L-elsbetiae_contig5960:835..9141622816645.8556647-CDS-L-elsbetiae_contig5960:835..914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5960 836..914 +
1691683709.0500805-CDS-L-elsbetiae_contig5960:835..9141691683709.0500805-CDS-L-elsbetiae_contig5960:835..914Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5960 836..914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5960.14452.1prot_L-elsbetiae_contig5960.14452.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5960 496..914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5960.14452.1

>prot_L-elsbetiae_contig5960.14452.1 ID=prot_L-elsbetiae_contig5960.14452.1|Name=mRNA_L-elsbetiae_contig5960.14452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=54bp
SVRTLSLLLLLVGRLDLAKTSPPVYFGPPVPLFGAALGSAWTRRRVCEMG
GPCS
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mRNA from alignment at L-elsbetiae_contig5960:496..916+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5960.14452.1 ID=mRNA_L-elsbetiae_contig5960.14452.1|Name=mRNA_L-elsbetiae_contig5960.14452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=421bp|location=Sequence derived from alignment at L-elsbetiae_contig5960:496..916+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGTCCGTACCCTCTCGTTGTTGCTGCTGCTGGTTGGACGGCTGGATCT
GGCGAAAACGAGCCCCCCTGTTTATTTTGGACCGTGCGTGTGGTTGAAGG
GCCGAGAAAAAAGAGGACCAATGACGCGTTGACACTCAAAGGCATGTTTC
TTGATTACTCTTGTCGCGGGGTTTTACGAATGTGTGTAGATACTCTAACG
CCCGTCCCCCCGGTATCTCATCGCGGTCCATACGCACCCCCTCACGTAGC
CTAACCGCGCACATCGTCCTTTATGTTCTTTGCCTGTTAATTCCCTTATC
TCTCTCTCGTACACACACCCTCCCTCTACCCGCTCTGCAGACCCGTGCCC
CTCTTCGGCGCGGCTCTTGGATCTGCGTGGACGCGAAGGCGTGTGTGTGA
GATGGGCGGGCCTTGCAGCTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5960:496..916+

>mRNA_L-elsbetiae_contig5960.14452.1 ID=mRNA_L-elsbetiae_contig5960.14452.1|Name=mRNA_L-elsbetiae_contig5960.14452.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=324bp|location=Sequence derived from alignment at L-elsbetiae_contig5960:496..916+ (Laminarionema elsbetiae ELsaHSoW15)
AGCGTCCGTACCCTCTCGTTGTTGCTGCTGCTGGTTGGACGGCTGGATCT
GGCGAAAACGAGCCCCCCTGTTTATTTTGGACCAGCGTCCGTACCCTCTC
GTTGTTGCTGCTGCTGGTTGGACGGCTGGATCTGGCGAAAACGAGCCCCC
CTGTTTATTTTGGACCACCCGTGCCCCTCTTCGGCGCGGCTCTTGGATCT
GCGTGGACGCGAAGGCGTGTGTGTGAGATGGGCGGGCCTTGCAGCACCCG
TGCCCCTCTTCGGCGCGGCTCTTGGATCTGCGTGGACGCGAAGGCGTGTG
TGTGAGATGGGCGGGCCTTGCAGC
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