mRNA_L-elsbetiae_contig5954.14444.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5954.14444.1
Unique NamemRNA_L-elsbetiae_contig5954.14444.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5954.14444.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5954contigL-elsbetiae_contig5954:3585..3981 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size397
Cds size363
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5954.14444.1prot_L-elsbetiae_contig5954.14444.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5954 3607..3969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.7742543-UTR-L-elsbetiae_contig5954:3584..36061622816644.7742543-UTR-L-elsbetiae_contig5954:3584..3606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5954 3585..3606 +
1691683708.1431627-UTR-L-elsbetiae_contig5954:3584..36061691683708.1431627-UTR-L-elsbetiae_contig5954:3584..3606Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5954 3585..3606 +
1622816644.802899-UTR-L-elsbetiae_contig5954:3969..39811622816644.802899-UTR-L-elsbetiae_contig5954:3969..3981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5954 3970..3981 +
1691683708.1625905-UTR-L-elsbetiae_contig5954:3969..39811691683708.1625905-UTR-L-elsbetiae_contig5954:3969..3981Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5954 3970..3981 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.788002-CDS-L-elsbetiae_contig5954:3606..39691622816644.788002-CDS-L-elsbetiae_contig5954:3606..3969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5954 3607..3969 +
1691683708.1529908-CDS-L-elsbetiae_contig5954:3606..39691691683708.1529908-CDS-L-elsbetiae_contig5954:3606..3969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5954 3607..3969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5954.14444.1

>prot_L-elsbetiae_contig5954.14444.1 ID=prot_L-elsbetiae_contig5954.14444.1|Name=mRNA_L-elsbetiae_contig5954.14444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=121bp
MITRMFPLKKMGVKTVKRIPTPIEIAVPNTCSFCTDFKEEEIRTNSLSPQ
LQLRGPPLTHANTHTPNTCDRPLAGMTPANRMGSQAWPMRQHNLICLRMR
TDHSSSRHRRVAPLTGHARS*
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mRNA from alignment at L-elsbetiae_contig5954:3585..3981+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5954.14444.1 ID=mRNA_L-elsbetiae_contig5954.14444.1|Name=mRNA_L-elsbetiae_contig5954.14444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=397bp|location=Sequence derived from alignment at L-elsbetiae_contig5954:3585..3981+ (Laminarionema elsbetiae ELsaHSoW15)
CAGCTCAAACAGCAGACACGCGATGATAACCAGGATGTTTCCCTTAAAAA
AAATGGGGGTCAAGACAGTCAAACGGATTCCAACCCCCATAGAAATTGCG
GTGCCAAACACGTGTTCTTTTTGTACTGATTTCAAAGAGGAAGAAATCAG
AACCAACAGTCTTTCCCCGCAACTTCAACTACGTGGTCCACCCTTAACAC
ATGCAAACACCCATACACCAAACACCTGCGACAGGCCTCTTGCTGGCATG
ACGCCCGCGAATCGAATGGGCAGCCAGGCTTGGCCAATGAGACAGCATAA
CCTGATATGCTTACGCATGAGAACCGACCACAGCTCGAGCAGACATAGGC
GCGTAGCTCCTCTCACAGGGCACGCCAGATCATGAGATTTGCCAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5954:3585..3981+

>mRNA_L-elsbetiae_contig5954.14444.1 ID=mRNA_L-elsbetiae_contig5954.14444.1|Name=mRNA_L-elsbetiae_contig5954.14444.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=726bp|location=Sequence derived from alignment at L-elsbetiae_contig5954:3585..3981+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAACCAGGATGTTTCCCTTAAAAAAAATGGGGGTCAAGACAGTCAA
ACGGATTCCAACCCCCATAGAAATTGCGGTGCCAAACACGTGTTCTTTTT
GTACTGATTTCAAAGAGGAAGAAATCAGAACCAACAGTCTTTCCCCGCAA
CTTCAACTACGTGGTCCACCCTTAACACATGCAAACACCCATACACCAAA
CACCTGCGACAGGCCTCTTGCTGGCATGACGCCCGCGAATCGAATGGGCA
GCCAGGCTTGGCCAATGAGACAGCATAACCTGATATGCTTACGCATGAGA
ACCGACCACAGCTCGAGCAGACATAGGCGCGTAGCTCCTCTCACAGGGCA
CGCCAGATCATGAATGATAACCAGGATGTTTCCCTTAAAAAAAATGGGGG
TCAAGACAGTCAAACGGATTCCAACCCCCATAGAAATTGCGGTGCCAAAC
ACGTGTTCTTTTTGTACTGATTTCAAAGAGGAAGAAATCAGAACCAACAG
TCTTTCCCCGCAACTTCAACTACGTGGTCCACCCTTAACACATGCAAACA
CCCATACACCAAACACCTGCGACAGGCCTCTTGCTGGCATGACGCCCGCG
AATCGAATGGGCAGCCAGGCTTGGCCAATGAGACAGCATAACCTGATATG
CTTACGCATGAGAACCGACCACAGCTCGAGCAGACATAGGCGCGTAGCTC
CTCTCACAGGGCACGCCAGATCATGA
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