mRNA_L-elsbetiae_contig5954.14445.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: A0A6H5L1F8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F8_9PHAE) HSP 1 Score: 114 bits (286), Expect = 2.890e-26 Identity = 104/174 (59.77%), Postives = 114/174 (65.52%), Query Frame = 1 Query: 1 VNLSERKAFLKEKVTAIMLEGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKRTDFQLS---PALYEFMGSKETMMARGD----VTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVG-------DTESCSS 480 V+LSE+KAFLKE VTAIM EG+ XXXXXXXXXXXXXXXXXXXXXX ++R + S PA + + AR VTKAVWAYIRA SLQDPKD RKIRND+KMFRVFKCKTMNMMHIAKKLSPHLKK SDLV DTE+ SS Sbjct: 41 VDLSEKKAFLKETVTAIMSEGDEXXXXXXXXXXXXXXXXXXXXXX---------------------SQRARLRPSASPPASSSPLPCTSSWAARTRAWPAVTKAVWAYIRAESLQDPKDGRKIRNDEKMFRVFKCKTMNMMHIAKKLSPHLKKVSDLVESGAPNEEVDTEASSS 193
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: D7G2V1_ECTSI (SWIB/MDM2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2V1_ECTSI) HSP 1 Score: 111 bits (277), Expect = 1.030e-25 Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 1 Query: 280 VTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLV 453 VTKAVWAYIRA SLQDPKDRRKIRNDDKMF VFKCKTMNMMHIAKKLSPHLKK SDLV Sbjct: 56 VTKAVWAYIRAESLQDPKDRRKIRNDDKMFPVFKCKTMNMMHIAKKLSPHLKKLSDLV 113
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: V4NNF9_EUTSA (Uncharacterized protein n=1 Tax=Eutrema salsugineum TaxID=72664 RepID=V4NNF9_EUTSA) HSP 1 Score: 71.2 bits (173), Expect = 1.660e-10 Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 217 QLSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVGDTESC 474 QLSP L +F+G+ + +AR +VTK +WAYI+ LQDPKDRRKI D+ + +F+ K++NM ++K L+ H+ +GD + C Sbjct: 125 QLSPQLEKFLGTSQ--LARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLFRVKSINMFQMSKALTKHIWP-----LGDGDGC 203
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: UPI000CED48BA (DNA ligase 1 isoform X1 n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=UPI000CED48BA) HSP 1 Score: 71.2 bits (173), Expect = 2.100e-10 Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 Query: 217 QLSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVGDTESC 474 QLSP L +F+G+ + +AR +VTK +WAYI+ LQDPKDRRKI D+ + +F+ K++NM ++K L+ H+ +GD + C Sbjct: 125 QLSPQLEKFLGTSQ--LARTEVTKKLWAYIKEKDLQDPKDRRKILCDESLHSLFRVKSINMFQMSKALTKHIWP-----LGDGDGC 203
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: A0A7N2MYS9_QUELO (Uncharacterized protein n=5 Tax=Fagaceae TaxID=3503 RepID=A0A7N2MYS9_QUELO) HSP 1 Score: 70.5 bits (171), Expect = 4.110e-10 Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1 Query: 220 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHL 432 LSP L EF+G E +AR V K VWAYIR +LQDPK+RR IR D+ + +F+ KT+NM + K LS H+ Sbjct: 133 LSPKLQEFVGEPE--LARTQVVKKVWAYIRENNLQDPKNRRNIRCDESLHTLFRVKTINMFQMNKALSKHI 201
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: UPI00098E01B3 (upstream activation factor subunit spp27-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E01B3) HSP 1 Score: 69.3 bits (168), Expect = 5.170e-10 Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = 1 Query: 220 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVGDTESCSSXXXXXXAAPKGEDEVDERELR 543 LSP L EF+G ET +AR +V K +WAYIR SLQDP +RRKI D++M +F K ++M + K LS H+ D+E+ S PK E E + R Sbjct: 118 LSPQLQEFLG--ETELARTEVVKRIWAYIRENSLQDPSNRRKILCDERMQNLFNVKKIDMFQMNKALSKHIWPL------DSEAGSIKPAQKERKPKKEREASDESPR 217
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: UPI00098E144D (upstream activation factor subunit UAF30-like isoform X1 n=3 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E144D) HSP 1 Score: 69.3 bits (168), Expect = 5.630e-10 Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1 Query: 220 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHL 432 LSP L EF+G ET +AR +V K +WAYIR SLQDP +RRKI D++M +F K+++M + K LS H+ Sbjct: 131 LSPQLQEFLG--ETELARTEVVKRIWAYIRENSLQDPSNRRKILCDERMHNLFNVKSIDMFQMNKALSKHI 199
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: A0A7C9AVY7_OPUST (Uncharacterized protein n=2 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AVY7_OPUST) HSP 1 Score: 68.2 bits (165), Expect = 6.190e-10 Identity = 35/71 (49.30%), Postives = 47/71 (66.20%), Query Frame = 1 Query: 220 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHL 432 LSP L EF+G E +AR +V K +W YIR LQDPK+RR I+ DDK+ +F+ T+NM + K LS H+ Sbjct: 42 LSPQLQEFVGVPE--LARTEVVKKLWEYIREKDLQDPKNRRNIKCDDKLHSIFRVDTINMFQMNKALSKHI 110
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: UPI00053C9E86 (golgin subfamily A member 6-like protein 22 isoform X1 n=5 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C9E86) HSP 1 Score: 70.1 bits (170), Expect = 6.880e-10 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1 Query: 214 FQLSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSD 447 +QLSP L F+GS + +AR +V K +WAYIR +LQDPK++R I D+ + +FK K +NM ++K LS H+ SD Sbjct: 123 WQLSPQLENFIGSSQ--LARTEVVKKIWAYIREKNLQDPKNKRNIICDESLHSLFKVKAINMFQMSKALSKHIWPLSD 198
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Match: A0A7J9GPB7_9ROSI (Uncharacterized protein n=1 Tax=Gossypium harknessii TaxID=34285 RepID=A0A7J9GPB7_9ROSI) HSP 1 Score: 67.4 bits (163), Expect = 8.630e-10 Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 220 LSPALYEFMGSKETMMARGDVTKAVWAYIRAASLQDPKDRRKIRNDDKMFRVFKCKTMNMMHIAKKLSPHLKKYSDLVVGDTESCSSXXXXXXAAPKGEDEVDERE 537 LSP L F+G E +AR +V K +W YIR +LQDPKD+R + DD ++ +F+ K++NM + K LS H+ ++ V +S + A + DE ++E Sbjct: 21 LSPQLQAFIGESE--LARTEVVKRLWTYIREKNLQDPKDKRNVLCDDSLYALFRVKSINMFQMNKALSKHIWPLNEEEV-QADSAKTERKSKQARERVADEPKQKE 123 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5954.14445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5954.14445.1 >prot_L-elsbetiae_contig5954.14445.1 ID=prot_L-elsbetiae_contig5954.14445.1|Name=mRNA_L-elsbetiae_contig5954.14445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp MLEGEGDGEDQEEEEGEEQEEEEEEEEEEEEEEEEEEGEEPAAVKAKAKTback to top mRNA from alignment at L-elsbetiae_contig5954:5905..7231+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5954.14445.1 ID=mRNA_L-elsbetiae_contig5954.14445.1|Name=mRNA_L-elsbetiae_contig5954.14445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1327bp|location=Sequence derived from alignment at L-elsbetiae_contig5954:5905..7231+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5954:5905..7231+ >mRNA_L-elsbetiae_contig5954.14445.1 ID=mRNA_L-elsbetiae_contig5954.14445.1|Name=mRNA_L-elsbetiae_contig5954.14445.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig5954:5905..7231+ (Laminarionema elsbetiae ELsaHSoW15)back to top |