mRNA_L-elsbetiae_contig5948.14437.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5948.14437.1
Unique NamemRNA_L-elsbetiae_contig5948.14437.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 1.960e-24
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = 2
Query:    2 GGSACYSAEAAMQALYHEEIEGESNVTGYEGHATQILWKSTKQLGCVVSTCAAGDQEITYLVCQYDPPGNYMVKVEQEVGLP 247
            G  +CYS E AM+ LY++E++ +S V  Y GHATQILWKST+Q+GCVV+ C  G     +LVCQYDPPGNY  + E++VGLP
Sbjct:  305 GSDSCYSHERAMEGLYYDEVQSDS-VLQYGGHATQILWKSTEQVGCVVARCTNGGTPYMFLVCQYDPPGNYGGQYEEQVGLP 385          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 4.290e-24
Identity = 47/82 (57.32%), Postives = 62/82 (75.61%), Query Frame = 2
Query:    2 GGSACYSAEAAMQALYHEEIEGESNVTGYEGHATQILWKSTKQLGCVVSTCAAGDQEITYLVCQYDPPGNYMVKVEQEVGLP 247
            G  +CYS E AM+ LY++E++ +S V  Y GHATQILWK+T+Q+GCVV+ C  G    T+LVCQYDPPGNY  + E++VGLP
Sbjct:  406 GSDSCYSHEKAMEGLYYDEVQFDS-VLQYGGHATQILWKATEQVGCVVARCTNGGTPYTFLVCQYDPPGNYGGQYEEQVGLP 486          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: A0A6H5KK50_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK50_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.300e-19
Identity = 46/84 (54.76%), Postives = 57/84 (67.86%), Query Frame = 2
Query:    2 GGSACYSAEAAMQALYHEEIEGESNVTGYEGHATQILWKSTKQLGCVVSTCAAGDQEITYLVCQYDPPGNYMVKVE--QEVGLP 247
            G   CY+ E AM+ LY EE++  + VT Y GHATQILWKSTK++GCV++ C  G    T+LVCQYDP GN     E  +EVGLP
Sbjct:  144 GTDTCYNHEYAMEKLYVEEVQFGA-VTDYIGHATQILWKSTKKVGCVLAQCTNGGTPYTFLVCQYDPAGNMGGDKEYIEEVGLP 226          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.550e-19
Identity = 46/84 (54.76%), Postives = 58/84 (69.05%), Query Frame = 2
Query:    2 GGSACYSAEAAMQALYHEEIEGESNVTGYEGHATQILWKSTKQLGCVVSTCAAGDQEITYLVCQYDPPGNYMVKVE--QEVGLP 247
            G   CY+ + AM+ LY EE++ + +VT Y GHATQILWKSTK +GCV++ C+ G    T+LVCQYDP GN     E  QEVGLP
Sbjct:  231 GTDTCYNHDYAMEHLYVEEVQFD-DVTDYIGHATQILWKSTKNVGCVLAGCSNGGTPYTFLVCQYDPAGNMGGDDEYRQEVGLP 313          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: A0A2A9NVB1_9AGAR (SCP domain-containing protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NVB1_9AGAR)

HSP 1 Score: 67.0 bits (162), Expect = 6.070e-12
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 2
Query:    5 GSACYSAEAAMQALYHEEIEGESNVTGYE---GHATQILWKSTKQLGCVVSTCAAG---DQEITYLVCQYDPPGNYMVKVEQEVG 241
            G+  ++ ++ ++    E  + + N  G+    GH TQ++WKST  + C ++ C AG   DQE  YLVC+YDPPGN+  + E+ VG
Sbjct:   85 GTGDFTFDSGLKLWMDEAAKYDYNHPGFSPETGHFTQVVWKSTTSVACAIADCPAGTIFDQESHYLVCRYDPPGNFEGQFEENVG 169          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: A0A6H5KE93_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE93_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.330e-12
Identity = 36/82 (43.90%), Postives = 45/82 (54.88%), Query Frame = 2
Query:    8 SACYSAEAAMQALYHEEIEGESNVTGYEGHATQILWKSTKQLGCVVSTCAAGDQEITYLVCQYDPPGNYMVKVEQEVGLPTN 253
            SAC+S E AM+A Y  ++ G S  T Y  +ATQ+LWKST Q+GC +  C         LVC+Y PP       E EV L  N
Sbjct:  158 SACFSPEIAMEAFYDSQVGGGSTST-YGPYATQVLWKSTTQIGCALRACEKEGLTYDILVCRYSPPAGEDA-TESEVALEAN 237          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: A0A835WKC9_9CHLO (SCP domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WKC9_9CHLO)

HSP 1 Score: 68.2 bits (165), Expect = 1.570e-11
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 2
Query:    8 SACYSAEAAMQALYHEEIEG----ESNVTGYEGHATQILWKSTKQLGCVVSTCAAGDQEITYLVCQYDPPGNYMVKVEQEVGLP 247
            +A Y + AA+ A +++EI        + +   GHATQ+LW S++QLGC  +  A G  + T  VCQY PPGN M + +Q V +P
Sbjct:  306 AAGYESWAAVAAAWYDEIRSYDYRSGSYSSSTGHATQMLWASSQQLGCATAASAQGCWQRTVYVCQYSPPGNVMGQFQQNVAVP 389          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: A0A1Q3EPT9_LENED (PR-1 protein n=2 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EPT9_LENED)

HSP 1 Score: 66.6 bits (161), Expect = 2.310e-11
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 2
Query:   92 GHATQILWKSTKQLGCVVSTCAAGDQEITYLVCQYDPPGNYMVKVEQEVGLPTN 253
            GH TQ++WKST  + C ++TC        YLVC+YDPPGNY+ +  Q VG P+N
Sbjct:  184 GHFTQVVWKSTTSVACAIATCNFLGNGTGYLVCRYDPPGNYLGQFAQNVGRPSN 237          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: A0A8E6Y8I3_MONPR (Pathogenesis-related protein 1 n=4 Tax=Moniliophthora perniciosa TaxID=153609 RepID=A0A8E6Y8I3_MONPR)

HSP 1 Score: 65.9 bits (159), Expect = 3.250e-11
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 2
Query:   17 YSAEAAMQALYHEEIEGESNVTGYE---GHATQILWKSTKQLGCVVSTCAAGD----QEITYLVCQYDPPGNYMVKVEQEVGLP 247
            Y  E AM A   E  + + +   +    GH TQ++WKST Q+ C ++ C +G     +   Y+VC+Y+PPGNYM + E+ VG+P
Sbjct:  128 YEIENAMAAWMRESEKYDYDYPHFSTSTGHFTQVVWKSTTQVACALAVCKSGTIFNTRSSNYVVCRYNPPGNYMGEFEKNVGMP 211          
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Match: D8LQY8_ECTSI (SCP-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY8_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.120e-10
Identity = 34/82 (41.46%), Postives = 44/82 (53.66%), Query Frame = 2
Query:    8 SACYSAEAAMQALYHEEIEGESNVTGYEGHATQILWKSTKQLGCVVSTCAAGDQEITYLVCQYDPPGNYMVKVEQEVGLPTN 253
            +AC+S E+AM+A Y  ++ G    T Y   ATQ+LWKST Q+GC +  C         LVC+Y PP       E EV L  N
Sbjct:  175 AACFSPESAMEAFYDSQVGGGPTST-YGPRATQVLWKSTTQIGCALRACEKDGLTYDILVCRYSPPAGEDT-TESEVALEAN 254          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5948.14437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZI7_9PHAE1.960e-2457.32SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJX3_ECTSI4.290e-2457.32Pathogenesis-related protein, class 1 n=3 Tax=Ecto... [more]
A0A6H5KK50_9PHAE1.300e-1954.76SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJW7_ECTSI3.550e-1954.76Pathogenesis-related protein, class 1 n=1 Tax=Ecto... [more]
A0A2A9NVB1_9AGAR6.070e-1237.65SCP domain-containing protein n=1 Tax=Amanita thie... [more]
A0A6H5KE93_9PHAE9.330e-1243.90SCP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835WKC9_9CHLO1.570e-1140.48SCP domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A1Q3EPT9_LENED2.310e-1150.00PR-1 protein n=2 Tax=Lentinula edodes TaxID=5353 R... [more]
A0A8E6Y8I3_MONPR3.250e-1138.10Pathogenesis-related protein 1 n=4 Tax=Moniliophth... [more]
D8LQY8_ECTSI1.120e-1041.46SCP-domain containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5948contigL-elsbetiae_contig5948:3282..4268 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size258
Cds size255
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5948.14437.1prot_L-elsbetiae_contig5948.14437.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5948 3284..4268 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816644.0113683-CDS-L-elsbetiae_contig5948:3283..33341622816644.0113683-CDS-L-elsbetiae_contig5948:3283..3334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5948 3284..3334 -
1691683707.6125-CDS-L-elsbetiae_contig5948:3283..33341691683707.6125-CDS-L-elsbetiae_contig5948:3283..3334Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5948 3284..3334 -
1622816644.027589-CDS-L-elsbetiae_contig5948:3760..39171622816644.027589-CDS-L-elsbetiae_contig5948:3760..3917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5948 3761..3917 -
1691683707.623369-CDS-L-elsbetiae_contig5948:3760..39171691683707.623369-CDS-L-elsbetiae_contig5948:3760..3917Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5948 3761..3917 -
1622816644.0384886-CDS-L-elsbetiae_contig5948:4221..42681622816644.0384886-CDS-L-elsbetiae_contig5948:4221..4268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5948 4222..4268 -
1691683707.63359-CDS-L-elsbetiae_contig5948:4221..42681691683707.63359-CDS-L-elsbetiae_contig5948:4221..4268Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5948 4222..4268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5948.14437.1

>prot_L-elsbetiae_contig5948.14437.1 ID=prot_L-elsbetiae_contig5948.14437.1|Name=mRNA_L-elsbetiae_contig5948.14437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
RRQRVLQRRGGDASALPRRDRGRIECDRLRRARNSDPVEVDEATWVRGVD
VRRRRPRDHLPRLPVRPTGQLHGQSRAGSGASYQS
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mRNA from alignment at L-elsbetiae_contig5948:3282..4268-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5948.14437.1 ID=mRNA_L-elsbetiae_contig5948.14437.1|Name=mRNA_L-elsbetiae_contig5948.14437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=987bp|location=Sequence derived from alignment at L-elsbetiae_contig5948:3282..4268- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGCAGCGCGTGCTACAGCGCCGAGGCGGCGATGCAAGCGCTCTGTG AGTTTTTTGGTTGAAATGCTGCCCTGTGTGCAGCTCGTGCGGTGTGCGGT TGAAGTTGTCGTGTCGGGTACATGATGGAGTCACCGTTGTTACTTTTGTT GGTCCCCCCCACGTGTTTCATCAACCATTGAGCAGCTAAGACCACAGGCG AGTGTCGCAAGCCGCCGGCGCGATCCCTCTCGGCGCGTGACTCATGTGTC GTGTGCAGTCGCGATATTCTCCCTGACAAGTCTAAAAAAAACACGCCCCA CCCATGCCCCCCTGCACCCACCCGCTGTTGTTATTCCACCATAAACGACA GACCACGAAGAGATCGAGGGCGAATCGAATGTGACCGGTTACGAAGGGCA CGCAACTCAGATCCTGTGGAAGTCGACGAAGCAACTTGGGTGCGTGGTGT CGACGTGCGCCGCCGGCGACCAAGAGATCACCTACCTCGTCTGCCAGTAC GACCCACCGTGAGTGTGTGCTCCCGAGTCTTCGTTGTCTGCCACGACGAA AACACCTAGATGTGTGTACGATAATACCGTGATATATGTACCGCCTTGAA TTTTCTTCCCCAAATTTGGTCGTTCAAAGCGCTCTCTTTTCAGATATAAT ACTTGCGTGGGGGTGCCGTGCTTGCTTGAGCGCCCCTCCCGTGGGGCCAG TGCAGTCCCCACGCCAGTGTGCATGGACCCTGCGGCAAAAGCACATTTTC AACATCCACCCGAAGCGAATCATCAACAGCAGCCAGTCCCCCAGATATAT ATCCGCCTTTTGTGGCCTCTCTCGTCCATTAACTATTTTTTGTTTTATTT TCTTCACGTTTATTTATTGCTTTCTGATCTTTGTGTCCTCCCGCATGCCT TACAACCGATCTGCTGTTGTTCGAAACCGTCCAGGGGCAACTACATGGTC AAAGTCGAGCAGGAAGTGGGGCTTCCTACCAATCAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5948:3282..4268-

>mRNA_L-elsbetiae_contig5948.14437.1 ID=mRNA_L-elsbetiae_contig5948.14437.1|Name=mRNA_L-elsbetiae_contig5948.14437.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig5948:3282..4268- (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGCAGCGCGTGCTACAGCGCCGAGGCGGCGATGCAAGCGCTCTCGG
CGGCAGCGCGTGCTACAGCGCCGAGGCGGCGATGCAAGCGCTCTACCACG
AAGAGATCGAGGGCGAATCGAATGTGACCGGTTACGAAGGGCACGCAACT
CAGATCCTGTGGAAGTCGACGAAGCAACTTGGGTGCGTGGTGTCGACGTG
CGCCGCCGGCGACCAAGAGATCACCTACCTCGTCTGCCAGTACGACCCAC
CACCACGAAGAGATCGAGGGCGAATCGAATGTGACCGGTTACGAAGGGCA
CGCAACTCAGATCCTGTGGAAGTCGACGAAGCAACTTGGGTGCGTGGTGT
CGACGTGCGCCGCCGGCGACCAAGAGATCACCTACCTCGTCTGCCAGTAC
GACCCACCGGGCAACTACATGGTCAAAGTCGAGCAGGAAGTGGGGCTTCC
TACCAATCAGGGCAACTACATGGTCAAAGTCGAGCAGGAAGTGGGGCTTC
CTACCAATCA
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