mRNA_L-elsbetiae_contig5947.14435.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5947.14435.1
Unique NamemRNA_L-elsbetiae_contig5947.14435.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5947.14435.1 vs. uniprot
Match: A0A6H5KS62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS62_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 9.090e-23
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 MGGWLMFYSFGVAKCLLDHGLHKVRPMQQSFIGSSAGSLAAAALALEADIDK 156
            MGGWLMFY+FGVAKCLLDHGLH VRP +QS IGSSAGSLAAAAL LEADIDK
Sbjct:  154 MGGWLMFYTFGVAKCLLDHGLHNVRPTEQSVIGSSAGSLAAAALVLEADIDK 205
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BLAST of mRNA_L-elsbetiae_contig5947.14435.1 vs. uniprot
Match: D7FRC4_ECTSI (PNPLA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRC4_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.970e-21
Identity = 46/52 (88.46%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    1 MGGWLMFYSFGVAKCLLDHGLHKVRPMQQSFIGSSAGSLAAAALALEADIDK 156
            MGGWLMFY+FGVAKCLLDHGLH VRP +QS IGSSAGSLAAAAL LEADIDK
Sbjct:    1 MGGWLMFYTFGVAKCLLDHGLHNVRPTEQSVIGSSAGSLAAAALVLEADIDK 52
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BLAST of mRNA_L-elsbetiae_contig5947.14435.1 vs. uniprot
Match: A0A835ZCR0_9STRA (Acyl transferase/acyl hydrolase/lysophospholipase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 4.190e-12
Identity = 35/50 (70.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:    4 GGWLMFYSFGVAKCLLDHGLHKVRPMQQSFIGSSAGSLAAAALALEADID 153
            GGWL FY FGVAKCL DHGLH V    Q FIGSSAG+L AA +AL+AD D
Sbjct:   24 GGWLQFYLFGVAKCLTDHGLHAVG-RSQKFIGSSAGALTAAGMALDADWD 72
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5947.14435.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KS62_9PHAE9.090e-2388.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRC4_ECTSI1.970e-2188.46PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A835ZCR0_9STRA4.190e-1270.00Acyl transferase/acyl hydrolase/lysophospholipase ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5947contigL-elsbetiae_contig5947:3062..3244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue5.3e-18
Seed eggNOG ortholog2880.D7FRC4
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K16816
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04714,ko04923,map00561,map01100,map04714,map04923
KEGG ModuleM00098
Hectar predicted targeting categoryother localisation
EggNOG free text desc.triglyceride catabolic process
EggNOG OGsKOG3773@1,KOG3773@2759
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size183
Cds size183
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.8847086-CDS-L-elsbetiae_contig5947:3061..32441622816643.8847086-CDS-L-elsbetiae_contig5947:3061..3244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5947 3062..3244 +
1691683707.5388403-CDS-L-elsbetiae_contig5947:3061..32441691683707.5388403-CDS-L-elsbetiae_contig5947:3061..3244Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5947 3062..3244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5947.14435.1prot_L-elsbetiae_contig5947.14435.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5947 3062..3244 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5947.14435.1

>prot_L-elsbetiae_contig5947.14435.1 ID=prot_L-elsbetiae_contig5947.14435.1|Name=mRNA_L-elsbetiae_contig5947.14435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=61bp
MGGWLMFYSFGVAKCLLDHGLHKVRPMQQSFIGSSAGSLAAAALALEADI
DKASASACFA*
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mRNA from alignment at L-elsbetiae_contig5947:3062..3244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5947.14435.1 ID=mRNA_L-elsbetiae_contig5947.14435.1|Name=mRNA_L-elsbetiae_contig5947.14435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=183bp|location=Sequence derived from alignment at L-elsbetiae_contig5947:3062..3244+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGGCTGGCTCATGTTTTACTCTTTCGGCGTGGCGAAGTGTCTGCT
AGATCACGGACTTCACAAGGTTCGCCCCATGCAGCAAAGCTTCATCGGCA
GCTCCGCGGGTTCTCTGGCAGCGGCCGCTTTGGCTCTAGAGGCTGACATA
GATAAGGCAAGTGCGAGCGCATGCTTCGCCTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5947:3062..3244+

>mRNA_L-elsbetiae_contig5947.14435.1 ID=mRNA_L-elsbetiae_contig5947.14435.1|Name=mRNA_L-elsbetiae_contig5947.14435.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=366bp|location=Sequence derived from alignment at L-elsbetiae_contig5947:3062..3244+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGGCTGGCTCATGTTTTACTCTTTCGGCGTGGCGAAGTGTCTGCT
AGATCACGGACTTCACAAGGTTCGCCCCATGCAGCAAAGCTTCATCGGCA
GCTCCGCGGGTTCTCTGGCAGCGGCCGCTTTGGCTCTAGAGGCTGACATA
GATAAGGCAAGTGCGAGCGCATGCTTCGCCTGAATGGGCGGCTGGCTCAT
GTTTTACTCTTTCGGCGTGGCGAAGTGTCTGCTAGATCACGGACTTCACA
AGGTTCGCCCCATGCAGCAAAGCTTCATCGGCAGCTCCGCGGGTTCTCTG
GCAGCGGCCGCTTTGGCTCTAGAGGCTGACATAGATAAGGCAAGTGCGAG
CGCATGCTTCGCCTGA
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