mRNA_L-elsbetiae_contig594.14426.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig594.14426.1
Unique NamemRNA_L-elsbetiae_contig594.14426.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: D7FSP8_ECTSI (Multidrug Resistance associated Protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP8_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 2.530e-19
Identity = 46/64 (71.88%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:  367 RFDGALRVERDRPRPSLLRACRLTFGRDFLGLGWLKAANAALGLSGPLLLKVVVDAVQEAAEGD 558
            RFD A+R E  R RPSL+RACR TFGR+FL LGWLKAAN  LG SGPLLLKVVVDAVQ+A++ +
Sbjct:   28 RFDAAIRNEHGRRRPSLIRACRSTFGREFLNLGWLKAANTVLGFSGPLLLKVVVDAVQDASQSE 91
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: D7FSP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP9_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.060e-15
Identity = 40/61 (65.57%), Postives = 48/61 (78.69%), Query Frame = 1 
Query:  199 EVQSGVEGIDLDAAGGVSLLSFSWLNPLFRTGAARQLRSEDLPGLARGDQTAAWADRFDGA 381
            EV+SG EG  LD A  +S++SFSWLN LFRTGAARQLR+EDLP LAR D+ A WAD+ + A
Sbjct:  164 EVESGDEGGALDDASWLSMISFSWLNQLFRTGAARQLRAEDLPQLARQDRAAVWADKCERA 224
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: A0A0G4EFM2_VITBC (Uncharacterized protein n=4 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EFM2_VITBC)

HSP 1 Score: 71.6 bits (174), Expect = 3.590e-11
Identity = 42/102 (41.18%), Postives = 55/102 (53.92%), Query Frame = 1 
Query:  256 LSFSWLNPLFRTGAARQLRSEDLPGLARGDQTAAWADRFDGALRVERDRPRPSLLRACRLTFGRDFLGLGWLKAANAALGLSGPLLLKVVVDAVQEAAEGDE 561
            +SFSW+  + RTG +RQL   DLP L   D T   A  F   L  E+ RP PSLL    +  GR F  L  +      LGLSGPLLLK +++ V+  ++  E
Sbjct:   32 ISFSWMYGVLRTGNSRQLEHSDLPPLMPIDDTDRCAASFAALLSREQQRPSPSLLHCLHVGHGRQFYPLCLVLIVTTLLGLSGPLLLKALLEFVESGSDRGE 133
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: A0A067BKF6_SAPPC (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BKF6_SAPPC)

HSP 1 Score: 65.9 bits (159), Expect = 1.760e-9
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:  199 EVQSGVEGIDLDAAGGVSLLSFSWLNPLFRTGAARQLRSEDLPGLARGDQTAAWADRFDGALRVERDRPRPSLLRACRLTFGRDFLGLGWLKAANAALGLSGPLLLKVVV 528
            E +S  E    D+ G  + + F+WLNP+   G++R L+++DL GL R ++    A  F+     +R RPRPS+LRA    FG  FL  G L+    +L    P ++K ++
Sbjct:   10 EHKSLAETCPEDSDGWRAAVFFTWLNPIMELGSSRPLQADDLYGLDRCNRATNVAVAFEKQWAAQRQRPRPSILRALFGAFGTKFLWAGLLRLVRDSLQFVAPFVIKRMI 119
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: A0A662Y5E5_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5E5_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.410e-9
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  229 LDAAGGVSLLSFSWLNPLFRTGAARQLRSEDLPGLARGDQTAAWADRFDGALRVERDRPRPS---LLRACRLTFGRDFLGLGWLKAANAALGLSGPLLLKVVVD 531
            LD  G  S LS+SW++P    G  R+L   D+P L   D T+  A  F+  L+ E     PS    LR  R  +G + L  G   AAN A+GL+ PLLLK  +D
Sbjct:  119 LDHVGWFSQLSYSWISPFIALGKKRRLEMHDVPNLPLRDTTSTAATSFERELQHEFHTYGPSKRSFLRVARRLYGSEVLLFGAWSAANKAIGLASPLLLKFFLD 222
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: A0A7S0H029_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H029_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 4.230e-7
Identity = 32/98 (32.65%), Postives = 54/98 (55.10%), Query Frame = 1 
Query:  250 SLLSFSWLNPLFRTGAARQLRSEDLPGLARGDQTAAWADRFDGALRVERDRPRPSLLRACRLTFGRDFLGLGWLKAANAALGLSGPLLLKVVVDAVQE 543
            SL+SFSW++PL RTG  + L+ ED+ GLA  DQ+    + ++   +  + RP+ +L  A    +G  F   G LK  N      GP+ L +++  +++
Sbjct:  235 SLISFSWMSPLLRTGFQKPLQPEDIYGLADYDQSKTLTETWNPVWKDHQKRPKTTLTAAISEIWGYKFWFGGALKLINDGAQFVGPIFLNLIISFIKD 332
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: A0A2R7W0R5_ONCFA (Uncharacterized protein n=1 Tax=Oncopeltus fasciatus TaxID=7536 RepID=A0A2R7W0R5_ONCFA)

HSP 1 Score: 55.5 bits (132), Expect = 9.890e-6
Identity = 41/107 (38.32%), Postives = 59/107 (55.14%), Query Frame = 1 
Query:  220 GIDLDAAGGVSLLSFSWLNPLFRTGAARQLR-SEDLPGLARGDQTAAWADRFDGALRVE-RDRPRP--SLLRACRLTFGRDFLGLGWLKAANAALGLSGPLLLKVVV 528
            G+ L+  G +S+L FSW+NPL   G + +L+ SE+L  L     T+  A +   AL     D P P  SLL+A    F ++F G+G LK  +   G +GPLLL  +V
Sbjct:  246 GVALEGWGKLSILLFSWVNPLMEKGVSGKLQTSEELFDLPDKLLTSHLALKLRRALNQSIYDNPTPNVSLLKALHKCFWKEFYGVGILKLISDLSGFAGPLLLHSLV 352
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: A0A7S2ZPD1_9RHOD (Probable ATP-dependent transporter ycf16 n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZPD1_9RHOD)

HSP 1 Score: 53.9 bits (128), Expect = 3.910e-5
Identity = 39/121 (32.23%), Postives = 58/121 (47.93%), Query Frame = 1 
Query:  196 GEVQS---GVEGIDLDAAGGVSLLSFSWLNPLFRTGAARQLRSEDLPGLARGDQTAAWADRFDG------ALRVERDR-PRPSLLRACRLTFGRDFLGLGWLKAANAALGLSGPLLLKVVV 528
            GEV+    G  G   D     S LS+SW+NPL + GA RQL  ED+  + R + ++     F+       A R E+   P PSL RA      R ++  G L   + A  L+ P L++ ++
Sbjct:    9 GEVEDEPPGPPGPGPDEVSWWSKLSYSWINPLIKRGARRQLDPEDIWDIPRAEASSVRESEFEEEYKKRKAARTEKGLDPAPSLTRAFMKLHKRTYIIAGMLMFVSQAYNLAAPTLIQEII 129
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BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Match: A0A7S2ZR56_9RHOD (Probable ATP-dependent transporter ycf16 n=4 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZR56_9RHOD)

HSP 1 Score: 53.9 bits (128), Expect = 4.160e-5
Identity = 39/121 (32.23%), Postives = 58/121 (47.93%), Query Frame = 1 
Query:  196 GEVQS---GVEGIDLDAAGGVSLLSFSWLNPLFRTGAARQLRSEDLPGLARGDQTAAWADRFDG------ALRVERDR-PRPSLLRACRLTFGRDFLGLGWLKAANAALGLSGPLLLKVVV 528
            GEV+    G  G   D     S LS+SW+NPL + GA RQL  ED+  + R + ++     F+       A R E+   P PSL RA      R ++  G L   + A  L+ P L++ ++
Sbjct:    9 GEVEDEPPGPPGPGPDEVSWWSKLSYSWINPLIKRGARRQLDPEDIWDIPRAEASSVRESEFEEEYKKRKAARTEKGLDPAPSLTRAFMKLHKRTYIIAGMLMFVSQAYNLAAPTLIQEII 129
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig594.14426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FSP8_ECTSI2.530e-1971.88Multidrug Resistance associated Protein 1 n=1 Tax=... [more]
D7FSP9_ECTSI3.060e-1565.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4EFM2_VITBC3.590e-1141.18Uncharacterized protein n=4 Tax=Vitrella brassicaf... [more]
A0A067BKF6_SAPPC1.760e-934.55ABC transmembrane type-1 domain-containing protein... [more]
A0A662Y5E5_9STRA3.410e-939.42Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A7S0H029_9EUKA4.230e-732.65Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A2R7W0R5_ONCFA9.890e-638.32Uncharacterized protein n=1 Tax=Oncopeltus fasciat... [more]
A0A7S2ZPD1_9RHOD3.910e-532.23Probable ATP-dependent transporter ycf16 n=4 Tax=R... [more]
A0A7S2ZR56_9RHOD4.160e-532.23Probable ATP-dependent transporter ycf16 n=4 Tax=R... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig594contigL-elsbetiae_contig594:21749..23504 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.1
Seed ortholog evalue9.6e-18
Seed eggNOG ortholog2880.D7FSP8
KEGG koko:K05674
KEGG TC3.A.1.208
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons3
Model size566
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig594.14426.1prot_L-elsbetiae_contig594.14426.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig594 21749..23503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816643.1494553-CDS-L-elsbetiae_contig594:21748..219241622816643.1494553-CDS-L-elsbetiae_contig594:21748..21924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig594 21749..21924 +
1691683707.064978-CDS-L-elsbetiae_contig594:21748..219241691683707.064978-CDS-L-elsbetiae_contig594:21748..21924Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig594 21749..21924 +
1622816643.1607704-CDS-L-elsbetiae_contig594:22311..225031622816643.1607704-CDS-L-elsbetiae_contig594:22311..22503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig594 22312..22503 +
1691683707.075897-CDS-L-elsbetiae_contig594:22311..225031691683707.075897-CDS-L-elsbetiae_contig594:22311..22503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig594 22312..22503 +
1622816643.1757565-CDS-L-elsbetiae_contig594:23307..235031622816643.1757565-CDS-L-elsbetiae_contig594:23307..23503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig594 23308..23503 +
1691683707.084941-CDS-L-elsbetiae_contig594:23307..235031691683707.084941-CDS-L-elsbetiae_contig594:23307..23503Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig594 23308..23503 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig594.14426.1

>prot_L-elsbetiae_contig594.14426.1 ID=prot_L-elsbetiae_contig594.14426.1|Name=mRNA_L-elsbetiae_contig594.14426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
STHERRPSHRLVFRVTFGGLSHRAWRVDYPSEAVCVVYSWRCHRKRQSEL
GRVRVQVCRLCLMCVGEVQSGVEGIDLDAAGGVSLLSFSWLNPLFRTGAA
RQLRSEDLPGLARGDQTAAWADRFDGALRVERDRPRPSLLRACRLTFGRD
FLGLGWLKAANAALGLSGPLLLKVVVDAVQEAAEGDEE
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mRNA from alignment at L-elsbetiae_contig594:21749..23504+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig594.14426.1 ID=mRNA_L-elsbetiae_contig594.14426.1|Name=mRNA_L-elsbetiae_contig594.14426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1756bp|location=Sequence derived from alignment at L-elsbetiae_contig594:21749..23504+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACACACGAGCGCCGTCCATCCCACCGGTTGGTGTTTAGAGTTACCTT
TGGAGGATTATCGCACAGGGCTTGGCGTGTTGACTATCCTTCGGAGGCTG
TGTGTGTTGTGTATTCCTGGCGTTGCCACCGGAAGCGGCAATCGGAGCTG
GGGCGCGTGCGGGTGCAGGTGTGCAGGTCCGTGTGGTTGGAGCCTGTCTA
CATGTGTGAGAAATGGGATCGGTCGTGCTGTGTCAGTGAACCCTTTCCCT
GAAGGTCTTTGGCGATGGGTTGCCAGAGTTGAACTGCGGGGGGAATGCAT
TTTTTTCTTTCCGCAACTCCCAAGATCAATAATCTCCAGCACGTTTCCTT
CAACTCGATCATCCGGAGAGAATACGCAACATCTGTGATTTGAAAACTTA
GACCGCTTGTGTCGTGCATGCTTGCCAGGGTTCTCCTGCAACCCTCCGTG
ACTGTAGTAGCCCAGAATGATCTGCGCACAAAAACTCAAATTTAATCTCT
CTGCTCACGTCCACCATTCTCATATTTTCTGGTGGGCGTCCTTGCCCAAT
CTCACGTCTGTAGGTTGTGCCTCATGTGTGTCGGTGAGGTGCAGTCGGGA
GTTGAAGGCATTGATCTGGACGCTGCCGGCGGGGTCTCCCTGCTGTCGTT
CTCATGGCTCAACCCGCTCTTTCGAACGGGGGCCGCGCGGCAGCTGCGCT
CAGAAGACTTGCCCGGCCTAGCACGCGGTGACCAAACTGCTGCTTGGGCC
GACAGGTGTGAAATTGTTTCCCTCTCTGCACAAGTTAAATGGTGGCACGC
TGCTCGTACAACAGAGTACTGTGGTAGGGGATAGACTAGTAGTTGCCAGG
ACACAACGGGAAGGAGGTACATAATACACGAAACTATCGTGCAATTTTTA
TAATGAGCCGCGTGTAATTTTTATACAGGGGAACTCAACTGATGGTCCAT
ATACCTATTTAGTGTGGGCAGGAAGATGCTCCGTCTCGATAAGGGCGCCA
GAGATGAAACGCCAGTTTTCGTATGCACCACAGTGATTGGTAACGGTTTT
CACGGACCGCCTCTAGTCCGAAATCGTTCAATCGAGCGGTCGAGTGACGG
GCAGCGTGTGGGGCTTAAAGAAAATTGTCTGGGTTGATAGGATAGCCTTG
ATGACATTTTAGACCAAAATCTTTACTCAAGAGAAGAAAAATAGAGACGA
TGGAGGTGAAGTCACAAACCGTTTGTGTCTCTTGACGATGCTGTGCAGCT
ATTCTAGACCGTGATCTCATTGCCTCGGTAACATGGTTGCTTCCCAAGCA
GCTGCTTTGCGGTCGGGTGTTGATGTTCGAGATGGCAACAATTTGGCCCC
TACTTACCACAACACCTCATGTACCCGCCGTGATTTCCTTTACGGGAGGC
GCCGAGAATATCGGACTACAATTATGCAACTTCCACCCACCCAGTTGCAG
CGCACGCCTACATAAAACTCGCGCCATTTCTCTCAGAGCGCGACCCTCCC
TCCCCTGTTCGATACTACTCGTTGCCGCACGTGCGCTTCTCTCTGAACGA
CGAGGATAGGTTTGACGGGGCCCTGCGAGTCGAGCGAGACCGACCACGGC
CGTCGCTGCTGCGAGCATGCCGCTTGACGTTCGGGCGGGATTTTCTGGGT
CTCGGGTGGCTCAAGGCGGCCAACGCGGCCCTGGGATTATCCGGCCCCCT
TCTCCTGAAAGTCGTTGTGGATGCCGTGCAGGAGGCCGCCGAGGGCGATG
AAGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig594:21749..23504+

>mRNA_L-elsbetiae_contig594.14426.1 ID=mRNA_L-elsbetiae_contig594.14426.1|Name=mRNA_L-elsbetiae_contig594.14426.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig594:21749..23504+ (Laminarionema elsbetiae ELsaHSoW15)
AGCACACACGAGCGCCGTCCATCCCACCGGTTGGTGTTTAGAGTTACCTT
TGGAGGATTATCGCACAGGGCTTGGCGTGTTGACTATCCTTCGGAGGCTG
TGTGTGTTGTGTATTCCTGGCGTTGCCACCGGAAGCGGCAATCGGAGCTG
GGGCGCGTGCGGGTGCAGGTGTGCAGAGCACACACGAGCGCCGTCCATCC
CACCGGTTGGTGTTTAGAGTTACCTTTGGAGGATTATCGCACAGGGCTTG
GCGTGTTGACTATCCTTCGGAGGCTGTGTGTGTTGTGTATTCCTGGCGTT
GCCACCGGAAGCGGCAATCGGAGCTGGGGCGCGTGCGGGTGCAGGTGTGC
AGGTTGTGCCTCATGTGTGTCGGTGAGGTGCAGTCGGGAGTTGAAGGCAT
TGATCTGGACGCTGCCGGCGGGGTCTCCCTGCTGTCGTTCTCATGGCTCA
ACCCGCTCTTTCGAACGGGGGCCGCGCGGCAGCTGCGCTCAGAAGACTTG
CCCGGCCTAGCACGCGGTGACCAAACTGCTGCTTGGGCCGACAGGTTGTG
CCTCATGTGTGTCGGTGAGGTGCAGTCGGGAGTTGAAGGCATTGATCTGG
ACGCTGCCGGCGGGGTCTCCCTGCTGTCGTTCTCATGGCTCAACCCGCTC
TTTCGAACGGGGGCCGCGCGGCAGCTGCGCTCAGAAGACTTGCCCGGCCT
AGCACGCGGTGACCAAACTGCTGCTTGGGCCGACAGGTTTGACGGGGCCC
TGCGAGTCGAGCGAGACCGACCACGGCCGTCGCTGCTGCGAGCATGCCGC
TTGACGTTCGGGCGGGATTTTCTGGGTCTCGGGTGGCTCAAGGCGGCCAA
CGCGGCCCTGGGATTATCCGGCCCCCTTCTCCTGAAAGTCGTTGTGGATG
CCGTGCAGGAGGCCGCCGAGGGCGATGAAGAAGTTTGACGGGGCCCTGCG
AGTCGAGCGAGACCGACCACGGCCGTCGCTGCTGCGAGCATGCCGCTTGA
CGTTCGGGCGGGATTTTCTGGGTCTCGGGTGGCTCAAGGCGGCCAACGCG
GCCCTGGGATTATCCGGCCCCCTTCTCCTGAAAGTCGTTGTGGATGCCGT
GCAGGAGGCCGCCGAGGGCGATGAAGAA
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