mRNA_L-elsbetiae_contig5935.14418.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5935.14418.1
Unique NamemRNA_L-elsbetiae_contig5935.14418.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig5935.14418.1 vs. uniprot
Match: D8LP55_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP55_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 1.400e-33
Identity = 64/112 (57.14%), Postives = 75/112 (66.96%), Query Frame = 1 
Query:    1 MKRVFLPVSSGVGPKTRGLRGPCAQHQTRGAKHLTRPQKWEILERQRWRCKAYGGRIQLYSYANCDADHVIGVRRGGKTVPVNMQPLCVRCRRNKSARELRSVPGRVDLALE 336
            MK +FLPV SG G K     GP    +    KHLTRPQKW ILERQR RC + G RI++Y YA+CDADH+IGV RGGKTVP NM  LC+ C R K+  E   +P  VD+ALE
Sbjct:    1 MKHLFLPVFSGTGSKPVAYIGPSLNLRPVARKHLTRPQKWAILERQRSRCNSCGDRIRIYPYADCDADHIIGVCRGGKTVPENMNLLCLPCHRRKTCLEAGGLPRTVDVALE 112
[Close]
BLAST of mRNA_L-elsbetiae_contig5935.14418.1 vs. uniprot
Match: Q8QNP5_ESV1K (EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNP5_ESV1K)

HSP 1 Score: 121 bits (304), Expect = 1.780e-31
Identity = 61/112 (54.46%), Postives = 72/112 (64.29%), Query Frame = 1 
Query:    1 MKRVFLPVSSGVGPKTRGLRGPCAQHQTRGAKHLTRPQKWEILERQRWRCKAYGGRIQLYSYANCDADHVIGVRRGGKTVPVNMQPLCVRCRRNKSARELRSVPGRVDLALE 336
            M  +FLPV SG   K     GP    +    KHLTRPQKW ILERQR RC +YG RI +Y YANCDADH+I V RGGKT+P NM  LC+ C R K+  E   +P  V++ALE
Sbjct:    1 MTHLFLPVFSGTASKPVAYIGPSHNLRPVARKHLTRPQKWAILERQRSRCNSYGDRIHIYPYANCDADHIISVCRGGKTLPENMNLLCLPCHRRKTCLEAGGLPRTVNVALE 112
[Close]
BLAST of mRNA_L-elsbetiae_contig5935.14418.1 vs. uniprot
Match: D7G322_ECTSI (EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G322_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.450e-25
Identity = 58/112 (51.79%), Postives = 67/112 (59.82%), Query Frame = 1 
Query:    1 MKRVFLPVSSGVGPKTRGLRGPCAQHQTRGAKHLTRPQKWEILERQRWRCKAYGGRIQLYSYANCDADHVIGVRRGGKTVPVNMQPLCVRCRRNKSARELRSVPGRVDLALE 336
            M+  FLPV  GVG       GP    + R  KHLTR QK  +L+ QR RC + G  I L  YANCDADHVIGV RGG+TV  N Q LCVRC R K+  E    P  V++ALE
Sbjct:    1 MRCTFLPVFGGVGQAPVAYVGPSHNLRPRARKHLTRSQKQAVLQTQRSRCNSCGDLIHLQPYANCDADHVIGVCRGGETVEENTQMLCVRCHRQKTCLEAGGSPRTVEVALE 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5935.14418.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LP55_ECTSI1.400e-3357.14EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
Q8QNP5_ESV1K1.780e-3154.46EsV-1-16 n=1 Tax=Ectocarpus siliculosus virus 1 (i... [more]
D7G322_ECTSI1.450e-2551.79EsV-1-16 n=1 Tax=Ectocarpus siliculosus TaxID=2880... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5935contigL-elsbetiae_contig5935:7035..7596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-16 HNH nuclease
Ec32 orthologEc-06_006570.1
Exons1
Model size562
Cds size378
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.5044253-CDS-L-elsbetiae_contig5935:7034..74121622816642.5044253-CDS-L-elsbetiae_contig5935:7034..7412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5935 7035..7412 +
1691683706.6708426-CDS-L-elsbetiae_contig5935:7034..74121691683706.6708426-CDS-L-elsbetiae_contig5935:7034..7412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5935 7035..7412 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.5184665-UTR-L-elsbetiae_contig5935:7412..75961622816642.5184665-UTR-L-elsbetiae_contig5935:7412..7596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5935 7413..7596 +
1691683706.6814792-UTR-L-elsbetiae_contig5935:7412..75961691683706.6814792-UTR-L-elsbetiae_contig5935:7412..7596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5935 7413..7596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5935.14418.1prot_L-elsbetiae_contig5935.14418.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5935 7035..7412 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5935.14418.1

>prot_L-elsbetiae_contig5935.14418.1 ID=prot_L-elsbetiae_contig5935.14418.1|Name=mRNA_L-elsbetiae_contig5935.14418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MKRVFLPVSSGVGPKTRGLRGPCAQHQTRGAKHLTRPQKWEILERQRWRC
KAYGGRIQLYSYANCDADHVIGVRRGGKTVPVNMQPLCVRCRRNKSAREL
RSVPGRVDLALEERIVTCTFSRGGE*
back to top

mRNA from alignment at L-elsbetiae_contig5935:7035..7596+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5935.14418.1 ID=mRNA_L-elsbetiae_contig5935.14418.1|Name=mRNA_L-elsbetiae_contig5935.14418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=562bp|location=Sequence derived from alignment at L-elsbetiae_contig5935:7035..7596+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCGCGTGTTTCTACCCGTGTCCAGCGGGGTCGGTCCAAAAACCCG
TGGCCTACGTGGGCCCTGCGCACAACATCAGACCCGAGGCGCGAAACATT
TGACACGACCACAAAAGTGGGAAATATTGGAGCGCCAACGATGGCGATGT
AAAGCATATGGCGGTCGCATCCAGCTCTACTCTTACGCGAACTGCGATGC
CGATCATGTGATTGGCGTCCGCCGTGGGGGAAAAACGGTGCCAGTCAACA
TGCAGCCGCTTTGCGTTCGATGCCGTCGCAACAAATCTGCTCGGGAGCTC
AGATCGGTACCGGGGAGAGTCGACCTCGCCTTGGAAGAGAGGATCGTAAC
GTGTACATTTTCACGGGGGGGCGAATGACGTTCCCCGCGGACAACCGGAC
GCCGATGGAGGCGATAGAGAGCATATGTAGTCTGTCGCTGCCCCCGTTTA
AGGAGAGGTGGACAGAGGGTCTATAGAAGACGCCTACGAGGTGATGGACT
ACGCTAAAATGTTGCAAAAGTGTGTTTATACACCGGAGACACTCGTCACT
CCTGTATGTCAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5935:7035..7596+

>mRNA_L-elsbetiae_contig5935.14418.1 ID=mRNA_L-elsbetiae_contig5935.14418.1|Name=mRNA_L-elsbetiae_contig5935.14418.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig5935:7035..7596+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGCGCGTGTTTCTACCCGTGTCCAGCGGGGTCGGTCCAAAAACCCG
TGGCCTACGTGGGCCCTGCGCACAACATCAGACCCGAGGCGCGAAACATT
TGACACGACCACAAAAGTGGGAAATATTGGAGCGCCAACGATGGCGATGT
AAAGCATATGGCGGTCGCATCCAGCTCTACTCTTACGCGAACTGCGATGC
CGATCATGTGATTGGCGTCCGCCGTGGGGGAAAAACGGTGCCAGTCAACA
TGCAGCCGCTTTGCGTTCGATGCCGTCGCAACAAATCTGCTCGGGAGCTC
AGATCGGTACCGGGGAGAGTCGACCTCGCCTTGGAAGAGAGGATCGTAAC
GTGTACATTTTCACGGGGGGGCGAATGAATGAAGCGCGTGTTTCTACCCG
TGTCCAGCGGGGTCGGTCCAAAAACCCGTGGCCTACGTGGGCCCTGCGCA
CAACATCAGACCCGAGGCGCGAAACATTTGACACGACCACAAAAGTGGGA
AATATTGGAGCGCCAACGATGGCGATGTAAAGCATATGGCGGTCGCATCC
AGCTCTACTCTTACGCGAACTGCGATGCCGATCATGTGATTGGCGTCCGC
CGTGGGGGAAAAACGGTGCCAGTCAACATGCAGCCGCTTTGCGTTCGATG
CCGTCGCAACAAATCTGCTCGGGAGCTCAGATCGGTACCGGGGAGAGTCG
ACCTCGCCTTGGAAGAGAGGATCGTAACGTGTACATTTTCACGGGGGGGC
GAATGA
back to top