mRNA_L-elsbetiae_contig5934.14415.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5934.14415.1
Unique NamemRNA_L-elsbetiae_contig5934.14415.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5934.14415.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5934contigL-elsbetiae_contig5934:4920..5245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size328
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816642.3248127-CDS-L-elsbetiae_contig5934:4919..52431622816642.3248127-CDS-L-elsbetiae_contig5934:4919..5243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5934 4920..5243 +
1691683706.5467267-CDS-L-elsbetiae_contig5934:4919..52431691683706.5467267-CDS-L-elsbetiae_contig5934:4919..5243Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5934 4920..5243 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5934.14415.1prot_L-elsbetiae_contig5934.14415.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5934 4920..5243 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5934.14415.1

>prot_L-elsbetiae_contig5934.14415.1 ID=prot_L-elsbetiae_contig5934.14415.1|Name=mRNA_L-elsbetiae_contig5934.14415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=108bp
EIIWVKFDQIRGDFRQFGTASAEFLRYLPVFMIAMADDMLTRFKTRCWYH
SSAMKRKQKGSLAFVSHFPGFKSLIAVTRKGQKTAFFGPTVFLSVVHTCK
VVRAKRER
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mRNA from alignment at L-elsbetiae_contig5934:4920..5245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5934.14415.1 ID=mRNA_L-elsbetiae_contig5934.14415.1|Name=mRNA_L-elsbetiae_contig5934.14415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=326bp|location=Sequence derived from alignment at L-elsbetiae_contig5934:4920..5245+ (Laminarionema elsbetiae ELsaHSoW15)
GAGATAATATGGGTCAAGTTTGATCAAATACGGGGCGATTTTCGCCAATT
TGGTACCGCTTCGGCCGAATTTTTACGATATTTGCCTGTTTTCATGATAG
CCATGGCTGACGACATGCTCACACGCTTCAAGACGAGGTGTTGGTATCAT
TCATCAGCGATGAAGCGGAAACAAAAAGGAAGCTTAGCATTTGTTAGCCA
TTTTCCAGGTTTTAAATCCTTAATCGCTGTTACCCGGAAAGGGCAAAAGA
CGGCCTTTTTTGGGCCGACTGTTTTTCTTTCGGTCGTTCATACATGCAAG
GTGGTGCGTGCAAAAAGAGAACGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5934:4920..5245+

>mRNA_L-elsbetiae_contig5934.14415.1 ID=mRNA_L-elsbetiae_contig5934.14415.1|Name=mRNA_L-elsbetiae_contig5934.14415.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=648bp|location=Sequence derived from alignment at L-elsbetiae_contig5934:4920..5245+ (Laminarionema elsbetiae ELsaHSoW15)
GAGATAATATGGGTCAAGTTTGATCAAATACGGGGCGATTTTCGCCAATT
TGGTACCGCTTCGGCCGAATTTTTACGATATTTGCCTGTTTTCATGATAG
CCATGGCTGACGACATGCTCACACGCTTCAAGACGAGGTGTTGGTATCAT
TCATCAGCGATGAAGCGGAAACAAAAAGGAAGCTTAGCATTTGTTAGCCA
TTTTCCAGGTTTTAAATCCTTAATCGCTGTTACCCGGAAAGGGCAAAAGA
CGGCCTTTTTTGGGCCGACTGTTTTTCTTTCGGTCGTTCATACATGCAAG
GTGGTGCGTGCAAAAAGAGAACGAGAGATAATATGGGTCAAGTTTGATCA
AATACGGGGCGATTTTCGCCAATTTGGTACCGCTTCGGCCGAATTTTTAC
GATATTTGCCTGTTTTCATGATAGCCATGGCTGACGACATGCTCACACGC
TTCAAGACGAGGTGTTGGTATCATTCATCAGCGATGAAGCGGAAACAAAA
AGGAAGCTTAGCATTTGTTAGCCATTTTCCAGGTTTTAAATCCTTAATCG
CTGTTACCCGGAAAGGGCAAAAGACGGCCTTTTTTGGGCCGACTGTTTTT
CTTTCGGTCGTTCATACATGCAAGGTGGTGCGTGCAAAAAGAGAACGA
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