mRNA_L-elsbetiae_contig5929.14403.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5929.14403.1
Unique NamemRNA_L-elsbetiae_contig5929.14403.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5929.14403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5929contigL-elsbetiae_contig5929:1294..1878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size585
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5929.14403.1prot_L-elsbetiae_contig5929.14403.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5929 1391..1702 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.2054434-UTR-L-elsbetiae_contig5929:1293..13901622816641.2054434-UTR-L-elsbetiae_contig5929:1293..1390Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 1294..1390 +
1691683705.7857213-UTR-L-elsbetiae_contig5929:1293..13901691683705.7857213-UTR-L-elsbetiae_contig5929:1293..1390Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 1294..1390 +
1622816641.2351272-UTR-L-elsbetiae_contig5929:1702..18781622816641.2351272-UTR-L-elsbetiae_contig5929:1702..1878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 1703..1878 +
1691683705.813977-UTR-L-elsbetiae_contig5929:1702..18781691683705.813977-UTR-L-elsbetiae_contig5929:1702..1878Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5929 1703..1878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816641.2203-CDS-L-elsbetiae_contig5929:1390..17021622816641.2203-CDS-L-elsbetiae_contig5929:1390..1702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5929 1391..1702 +
1691683705.8032732-CDS-L-elsbetiae_contig5929:1390..17021691683705.8032732-CDS-L-elsbetiae_contig5929:1390..1702Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5929 1391..1702 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5929.14403.1

>prot_L-elsbetiae_contig5929.14403.1 ID=prot_L-elsbetiae_contig5929.14403.1|Name=mRNA_L-elsbetiae_contig5929.14403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
MKYYHTSSLGPISMICRVRLSVCLLDLSAISCRRAAREIIIISHFNNFTL
CCLFSLASLWTQDPRFRATLLPREHFFWRRVCVDGGNDGGPWLSRGRCTS
RGS*
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mRNA from alignment at L-elsbetiae_contig5929:1294..1878+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5929.14403.1 ID=mRNA_L-elsbetiae_contig5929.14403.1|Name=mRNA_L-elsbetiae_contig5929.14403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=585bp|location=Sequence derived from alignment at L-elsbetiae_contig5929:1294..1878+ (Laminarionema elsbetiae ELsaHSoW15)
ACTATCATTGGAAAGGGAAAGGAACAATTGTGATCGCATATCAAAATGAA
ATACTATCATTGGAAAGGGAAAGGAACAATTGTGGTCGCATATCGAAATG
AAATACTATCATACAAGTAGTTTAGGACCAATAAGTATGATATGTAGGGT
ACGGTTGAGTGTGTGTTTGTTGGATCTTTCTGCAATTAGTTGTCGGAGGG
CGGCAAGGGAAATTATAATAATTTCACATTTTAATAATTTCACATTGTGT
TGTTTGTTTTCGCTCGCTTCCCTTTGGACGCAAGACCCACGTTTTCGAGC
CACTTTACTGCCGAGAGAGCATTTTTTTTGGCGGCGCGTGTGTGTTGATG
GTGGAAACGATGGTGGGCCGTGGCTATCCCGGGGGCGGTGCACCAGCCGC
GGGTCATAGGGTTTCGAAACATATGCGCGAAAGGGAAGTGAAAATCGGGG
TTCGGGTCGACCGTGAACTGGCGCTGCCGGTCGCAACGTCCGACAACGAC
GACGACAGCGACGAGGACACGGTATCACACATCATCGGACTCTTTTCTGT
GCCAGCACACTAAAAAGGATGCCTATTTAGGGCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5929:1294..1878+

>mRNA_L-elsbetiae_contig5929.14403.1 ID=mRNA_L-elsbetiae_contig5929.14403.1|Name=mRNA_L-elsbetiae_contig5929.14403.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig5929:1294..1878+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATACTATCATACAAGTAGTTTAGGACCAATAAGTATGATATGTAG
GGTACGGTTGAGTGTGTGTTTGTTGGATCTTTCTGCAATTAGTTGTCGGA
GGGCGGCAAGGGAAATTATAATAATTTCACATTTTAATAATTTCACATTG
TGTTGTTTGTTTTCGCTCGCTTCCCTTTGGACGCAAGACCCACGTTTTCG
AGCCACTTTACTGCCGAGAGAGCATTTTTTTTGGCGGCGCGTGTGTGTTG
ATGGTGGAAACGATGGTGGGCCGTGGCTATCCCGGGGGCGGTGCACCAGC
CGCGGGTCATAGATGAAATACTATCATACAAGTAGTTTAGGACCAATAAG
TATGATATGTAGGGTACGGTTGAGTGTGTGTTTGTTGGATCTTTCTGCAA
TTAGTTGTCGGAGGGCGGCAAGGGAAATTATAATAATTTCACATTTTAAT
AATTTCACATTGTGTTGTTTGTTTTCGCTCGCTTCCCTTTGGACGCAAGA
CCCACGTTTTCGAGCCACTTTACTGCCGAGAGAGCATTTTTTTTGGCGGC
GCGTGTGTGTTGATGGTGGAAACGATGGTGGGCCGTGGCTATCCCGGGGG
CGGTGCACCAGCCGCGGGTCATAG
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