prot_L-elsbetiae_contig5924.14400.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig5924.14400.1
Unique Name	prot_L-elsbetiae_contig5924.14400.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	244

Homology

[Close]

BLAST of mRNA_L-elsbetiae_contig5924.14400.1 vs. uniprot
Match: D8LQC7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQC7_ECTSI)

HSP 1 Score: 261 bits (666), Expect = 8.770e-85
Identity = 138/208 (66.35%), Postives = 159/208 (76.44%), Query Frame = 0

Query:   27 QVEAGHSRSTTATSTSSYQSGGEYSGYSSLAGTESRGIRRIPLERTAPSQDHEGVQFSAPT-NFPGTQGAPGTTERLTACHRYSRIVRVLAILDALVVLCGASAFTPLILMIWGPIAGYLSSNFQLKAAYTFLFYYGLRISWDIGWLLSGGITWIVVWVFLFTDLAASGLVYFYLGALRGCSAAEVVQLRDPNTPFASSFFSRFVSGT 233
            +++  HS  T   STSSYQSGG YS  +        G+     ER APSQDH GVQFS P  +FPGT   P  +E L ACHRYSR+VRVLAILDA++VLCGASAFTPLILMIWGPIAGYL+SNF+L+AA+TFLFYYGLRISWDIGW+LSGGI W+VVWVFLFTD+AASGLVYF++  L  CS AEV  LRDPNT +AS+FF   V  T
Sbjct:   18 EMDEDHSTVTATPSTSSYQSGGSYSSVADTHHYRQAGMGPARTERLAPSQDHTGVQFSPPAPSFPGT---PRPSESLMACHRYSRVVRVLAILDAIIVLCGASAFTPLILMIWGPIAGYLASNFRLRAAFTFLFYYGLRISWDIGWILSGGIKWVVVWVFLFTDVAASGLVYFFVVLLCRCSTAEVEHLRDPNTAWASAFFPLSVGAT 222

[Close]

BLAST of mRNA_L-elsbetiae_contig5924.14400.1 vs. uniprot
Match: A0A6V1TFA5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TFA5_HETAK)

HSP 1 Score: 56.6 bits (135), Expect = 4.870e-6
Identity = 49/147 (33.33%), Postives = 74/147 (50.34%), Query Frame = 0

Query:   79 EGVQFSAPTN--FPGTQG---APGTTER-LTACHRYSRIVRVLAILDALVVLCGASAFTPLILMIWGPIAGYL-SSNFQLKAAYTFLFYYGLRISWDIGWLLSGGITWIVVWVFLFTDLAASGLVYFYLGALRGCSAAEVVQLRDPN 218
            EG+   A T    PG Q    A G  ER L   +   R VRV+A++D +++L     F    +++WGP+AGYL SS F+      +  YY L+++ DI ++L G   ++ V   L  DL  +  VY     L   + AE+  LR P+
Sbjct:   73 EGLAVLAGTAPLLPGPQAEGMALGDHERRLLETYSLGRGVRVIALIDGMILLFDCLLFPVFFVLMWGPLAGYLGSSYFRFSFVTCYFLYYVLKMAADIIFILYGAWWFLAV---LVIDLWIARWVYMLAALLWVANPAELEALRAPS 216

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig5924.14400.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig5924.14400.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LQC7_ECTSI	8.770e-85	66.35	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A6V1TFA5_HETAK	4.870e-6	33.33	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 180..200
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 174..179
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 116..141
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 201..243
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..115
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 153..173
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 142..152
None	No IPR available	TMHMM	TMhelix		coord: 165..187
None	No IPR available	TMHMM	TMhelix		coord: 120..142

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig5924	contig	L-elsbetiae_contig5924:6540..9753 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig5924.14400.1	mRNA_L-elsbetiae_contig5924.14400.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig5924 6402..9827 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig5924.14400.1 ID=prot_L-elsbetiae_contig5924.14400.1|Name=mRNA_L-elsbetiae_contig5924.14400.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=244bp
MNGTLNNPAGILSATDRLQQQRDDAQQVEAGHSRSTTATSTSSYQSGGEY
SGYSSLAGTESRGIRRIPLERTAPSQDHEGVQFSAPTNFPGTQGAPGTTE
RLTACHRYSRIVRVLAILDALVVLCGASAFTPLILMIWGPIAGYLSSNFQ
LKAAYTFLFYYGLRISWDIGWLLSGGITWIVVWVFLFTDLAASGLVYFYL
GALRGCSAAEVVQLRDPNTPFASSFFSRFVSGTRSSSGTSSVI*