prot_L-elsbetiae_contig5921.14396.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5921.14396.1
Unique Nameprot_L-elsbetiae_contig5921.14396.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length273
Homology
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: D8LMN3_ECTSI (CNOT1_TTP_bind domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN3_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.680e-78
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPDSAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSMQRQQG 134
            MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYP+KELRITGIL GSLIQHQLVSSITLGIALRYVLEALRRAPGPD AGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLV NHPALVEEIERSMQRQ G
Sbjct:  848 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILLGSLIQHQLVSSITLGIALRYVLEALRRAPGPDPAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPALVEEIERSMQRQGG 981          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: A0A6H5JXN6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXN6_9PHAE)

HSP 1 Score: 266 bits (679), Expect = 1.590e-77
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPDSAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSMQRQQG 134
            MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYP+KELRITGIL GSLIQHQLVSSITLGIALRYVLEALRRAPGPD AGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLV NHPALVEEIERSMQRQ G
Sbjct:  876 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPEKELRITGILLGSLIQHQLVSSITLGIALRYVLEALRRAPGPDPAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVGNHPALVEEIERSMQRQGG 1009          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: A0A7S2RR73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RR73_9STRA)

HSP 1 Score: 215 bits (547), Expect = 3.550e-67
Identity = 106/130 (81.54%), Postives = 117/130 (90.00%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPDSAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSMQ 130
            ML+RFK+SS+ REQEIFACM+HNLFDEYRFFH YP+KELRITGILFG+LIQHQLVSSITLGIALRYVLEALR+      +GKMFRFGMFALEQFK RL EWPQYCSHIVQI +L ANHP LVEEI+R+MQ
Sbjct:   21 MLKRFKTSSNQREQEIFACMIHNLFDEYRFFHKYPEKELRITGILFGTLIQHQLVSSITLGIALRYVLEALRKPHW--QSGKMFRFGMFALEQFKARLSEWPQYCSHIVQIDYLNANHPDLVEEIKRAMQ 148          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: A0A7S2G852_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G852_9STRA)

HSP 1 Score: 219 bits (558), Expect = 1.330e-65
Identity = 104/134 (77.61%), Postives = 118/134 (88.06%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPDSAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSMQRQQG 134
            ML++FK+S + REQEIFACM+HNLFDEYRFFH YP+KELRITGILFG+LIQHQLVSSITLGIALRYVLEALR+APG  + GKMFRFGMFALEQFK RL EWPQYCSHIVQI HL   H  LV+EI+R+M+  +G
Sbjct:  279 MLKKFKTSPNQREQEIFACMIHNLFDEYRFFHKYPEKELRITGILFGTLIQHQLVSSITLGIALRYVLEALRKAPGSGANGKMFRFGMFALEQFKARLYEWPQYCSHIVQIDHLCQQHAELVDEIQRAMKSSKG 412          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: W7TUR4_9STRA (Ccr4-not transcription n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUR4_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.030e-63
Identity = 106/132 (80.30%), Postives = 118/132 (89.39%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPDSAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSMQRQ 132
            ML+RFKSS D +E EIFACM+ NLFDEYRFFH YP+KELRITGILFGSLIQHQLVSS+TLG+ALRYVLEALRR PGP +AGK +RFGMFALEQF+GRL EWPQYCSH++QIPHL  NHP LV EIER+M RQ
Sbjct:  760 MLKRFKSSKDAKELEIFACMIRNLFDEYRFFHKYPEKELRITGILFGSLIQHQLVSSLTLGVALRYVLEALRRPPGPGNAGKWYRFGMFALEQFQGRLHEWPQYCSHLIQIPHLRQNHPDLVLEIERAMSRQ 891          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: A0A835ZHM2_9STRA (CCR4-Not complex component, Not1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM2_9STRA)

HSP 1 Score: 219 bits (557), Expect = 3.620e-61
Identity = 103/129 (79.84%), Postives = 112/129 (86.82%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPDSAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSM 129
            ML RF++S D REQ+IFACMVHNLFDEYRFFH YP+KELRITG+LFG LIQ  LVSSITLGIALRYVLEALR+ PGP + GKMFRFGMFALEQFKGRLGEWPQYCSHI  I HL A HP LV E+ER+M
Sbjct:  829 MLRRFQASDDKREQDIFACMVHNLFDEYRFFHKYPEKELRITGVLFGMLIQQGLVSSITLGIALRYVLEALRKPPGPGAEGKMFRFGMFALEQFKGRLGEWPQYCSHIASIQHLAAQHPELVREMERAM 957          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: A0A1Z5JVQ8_FISSO (CCR4-NOT transcription complex subunit 1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVQ8_FISSO)

HSP 1 Score: 207 bits (527), Expect = 3.720e-57
Identity = 100/133 (75.19%), Postives = 113/133 (84.96%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPDSAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSMQRQQ 133
            ML+RFK+S +++E EIFACMVHNLF+EYRFF+ YP+KELRITGILFG+LIQ QLVSSITLGIALRYVLEALR+ P   S GKMF+FGMFALEQFKGRL EWPQYCSHIVQIPHL   +  LV EIE  M + Q
Sbjct:  697 MLKRFKTSGNSKENEIFACMVHNLFNEYRFFNKYPEKELRITGILFGALIQEQLVSSITLGIALRYVLEALRKPPETTSTGKMFKFGMFALEQFKGRLHEWPQYCSHIVQIPHLKEKYAELVAEIESEMNKSQ 829          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: A0A7S2YLA2_9STRA (Hypothetical protein n=2 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLA2_9STRA)

HSP 1 Score: 206 bits (524), Expect = 9.290e-57
Identity = 102/135 (75.56%), Postives = 115/135 (85.19%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPD----SAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSMQR 131
            ML+RFK+S +++E EIFACMVHNLFDEYRFF  YP+KELRITGILFG+LIQ QLVSSITLGIALRYVLEALR+ P P     S+GKMF+FGMFALEQFKGRL EWPQYCSHIVQIPHL  N+  LV EIE+ M +
Sbjct:  459 MLKRFKTSGNSKENEIFACMVHNLFDEYRFFAKYPEKELRITGILFGALIQEQLVSSITLGIALRYVLEALRKPPTPQGSTTSSGKMFKFGMFALEQFKGRLHEWPQYCSHIVQIPHLKDNYGELVAEIEQEMAK 593          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: A0A7S4W626_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W626_9STRA)

HSP 1 Score: 204 bits (519), Expect = 4.320e-56
Identity = 101/135 (74.81%), Postives = 112/135 (82.96%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPD------SAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSM 129
            ML+RFK S + RE +IFACM+HNLFDEYRFF  YP+KELRITGILFG LIQHQLVSSITLGIALRYVLEALR+ P P       ++GKMFRFGMFALEQFKGRL EWPQYCSHIVQIPHL   +  LV+EIE +M
Sbjct:  578 MLKRFKISGNARENDIFACMIHNLFDEYRFFSKYPEKELRITGILFGMLIQHQLVSSITLGIALRYVLEALRKPPTPSVSTPNSNSGKMFRFGMFALEQFKGRLHEWPQYCSHIVQIPHLREKYSLLVDEIEGTM 712          
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Match: A0A7S4RY41_9STRA (Hypothetical protein n=10 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RY41_9STRA)

HSP 1 Score: 204 bits (519), Expect = 4.430e-56
Identity = 101/135 (74.81%), Postives = 112/135 (82.96%), Query Frame = 0
Query:    1 MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLIQHQLVSSITLGIALRYVLEALRRAPGPD------SAGKMFRFGMFALEQFKGRLGEWPQYCSHIVQIPHLVANHPALVEEIERSM 129
            ML+RFK S + RE +IFACM+HNLFDEYRFF  YP+KELRITGILFG LIQHQLVSSITLGIALRYVLEALR+ P P       ++GKMFRFGMFALEQFKGRL EWPQYCSHIVQIPHL   +  LV+EIE +M
Sbjct:  845 MLKRFKISGNARENDIFACMIHNLFDEYRFFSKYPEKELRITGILFGMLIQHQLVSSITLGIALRYVLEALRKPPTPSVSTPNSNSGKMFRFGMFALEQFKGRLHEWPQYCSHIVQIPHLREKYSLLVDEIEGTM 979          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5921.14396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMN3_ECTSI1.680e-7896.27CNOT1_TTP_bind domain-containing protein (Fragment... [more]
A0A6H5JXN6_9PHAE1.590e-7796.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2RR73_9STRA3.550e-6781.54Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2G852_9STRA1.330e-6577.61Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7TUR4_9STRA1.030e-6380.30Ccr4-not transcription n=2 Tax=Monodopsidaceae Tax... [more]
A0A835ZHM2_9STRA3.620e-6179.84CCR4-Not complex component, Not1-domain-containing... [more]
A0A1Z5JVQ8_FISSO3.720e-5775.19CCR4-NOT transcription complex subunit 1 n=2 Tax=F... [more]
A0A7S2YLA2_9STRA9.290e-5775.56Hypothetical protein n=2 Tax=Amphiprora paludosa T... [more]
A0A7S4W626_9STRA4.320e-5674.81Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4RY41_9STRA4.430e-5674.81Hypothetical protein n=10 Tax=Ditylum brightwellii... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 244..267
NoneNo IPR availablePANTHERPTHR13162:SF8CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 1coord: 1..250
IPR038535CCR4-NOT subunit 1, TTP binding domain superfamilyGENE3D1.25.40.840coord: 1..135
e-value: 1.4E-56
score: 192.6
IPR032193CCR4-NOT transcription complex subunit 1, TTP binding domainPFAMPF16417CNOT1_TTP_bindcoord: 1..133
e-value: 2.0E-57
score: 193.5
IPR040398CCR4-NOT transcription complex subunit 1PANTHERPTHR13162CCR4-NOT TRANSCRIPTION COMPLEXcoord: 1..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5921contigL-elsbetiae_contig5921:8823..9995 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5921.14396.1mRNA_L-elsbetiae_contig5921.14396.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5921 8817..9995 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5921.14396.1 ID=prot_L-elsbetiae_contig5921.14396.1|Name=mRNA_L-elsbetiae_contig5921.14396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=273bp
MLERFKSSSDTREQEIFACMVHNLFDEYRFFHNYPDKELRITGILFGSLI
QHQLVSSITLGIALRYVLEALRRAPGPDSAGKMFRFGMFALEQFKGRLGE
WPQYCSHIVQIPHLVANHPALVEEIERSMQRQQGSGGAAGGDGGGGGAVA
GAGAPAAEQGDDGQQLGQQQQQQQQSQLLAARAKGAEGAIGESSSSSVAG
GGQQQQGQQQQQQQQQQQQQRLPPGPSTPGRVGGAGTSAGPSAMQQMSQQ
QAQAQAQQQQQQQQQGQGQQQGQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038535CNOT1_TTP_bind_sf
IPR032193CNOT1_TTP_bind
IPR040398CNOT1