prot_L-elsbetiae_contig5916.14389.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5916.14389.1
Unique Nameprot_L-elsbetiae_contig5916.14389.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length471
Homology
BLAST of mRNA_L-elsbetiae_contig5916.14389.1 vs. uniprot
Match: D8LG81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG81_ECTSI)

HSP 1 Score: 444 bits (1141), Expect = 2.510e-146
Identity = 259/481 (53.85%), Postives = 322/481 (66.94%), Query Frame = 0
Query:    1 MIRIRSLAATCAREXXXXXXXXXXXXXXGGAKAT--VVAARAFS-----ASAQPPFANGSIGPAVGPEDDLAAFQPGQDQ-QGNEEKAEDLEDLLRRHTQAREDWTDPPEMSEYERAQLSKSLLRRIRGLAKARKSTKVGIAIKILDEGRRQGITSLVVYGAVLKQLLSTYGEAEAACENLQAILERMKEDGLEPDHRTYNHILDFHASVHAPQKAEEVXXXXXXXXXXXXXXXXXXXXVAHSRGSHNAMYRAVEEMNAKGWKGSRAAYLSMIAVMSKRRDYEGVLNTFRRMREETKKPTEAACVGAFRAAESLGQLEPAKQVFEHRMEVGLPPQEYAYVRMMVMCLKDGQPDQSLDYWRRLVCVNGLNGLTISPDTFNLAIKCATRAGNLEEMEAVVAMMESQGVVPTQATNVAALAGFER---PRGAGAPCMEDAERAFAVIAKTGPPPGLALRQRQAVGYAHAGMWQKALDLFGSVVS 470
            MIR+RSLAA CARE               GA+A   VVA RA       ASAQPP A           +     QPG  Q +G  E+ E + DLLR+H +AREDWT P  +++YER +L + L+RRI+ LA A K  K+G+ I+ILDEGRRQGI  LVVY AVLKQLLSTYGE++ A +NL+ +LERM+EDGL+PD  TYNHILDFHA +H  + A  V                    VAHSRG H+ MYRAVEEM AKGW+GSR A L MIAVM  RRDY+GVL T RRMREE+K PTEAA V A+RAAE LGQ+E AKQ+F HR E GLPP EY YV+MM++ +K G+ ++ L+YWR+LVCV+GLNG+ I P+T+NLAIKC     N +EMEAV+AMME+Q VVPT  T  AAL G E+   P  A     + A+RAF  IA++GPPP + + QR+A G+AHAG+WQ+A  LF  V++
Sbjct:    1 MIRVRSLAAACARECVRSASAGSSTSNGVGARAATGVVALRALRESSSLASAQPPSAADEAH-----SEGAGVMQPGNQQHEGEFERVEAVGDLLRQHARAREDWTGPLGLTDYERNRLREGLVRRIKRLAGANKRIKMGLVIQILDEGRRQGIKELVVYKAVLKQLLSTYGESKDAAQNLERVLERMEEDGLQPDVTTYNHILDFHALLHNSEAAVAVHEEMLSRGVEPNQRTASHMIVAHSRGCHDTMYRAVEEMYAKGWQGSRTACLGMIAVMGFRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAEHLGQVETAKQLFHHRAEAGLPPAEYVYVKMMLILMKAGKAEECLEYWRQLVCVHGLNGVVIHPETYNLAIKCTMVVDNQDEMEAVLAMMEAQRVVPTDETYAAALGGLEKWFTPHRA-----QGAQRAFEAIARSGPPPSMRVLQRKAKGWAHAGLWQEAEQLFSLVLA 471          
BLAST of mRNA_L-elsbetiae_contig5916.14389.1 vs. uniprot
Match: A0A6H5KYF7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYF7_9PHAE)

HSP 1 Score: 432 bits (1112), Expect = 5.830e-142
Identity = 256/484 (52.89%), Postives = 319/484 (65.91%), Query Frame = 0
Query:    1 MIRIRSLAATCAREXXXXXXXXXXXXXXGGAKAT--VVAARAFS-----ASAQPPFANGSIGPAVGPEDDLAAFQPGQDQQGNE-EKAEDLEDLLRRHTQAREDWTDPPEMSEYERAQLSKSLLRRIRGLAKARKSTKVGIAIKILDEGRRQGITSLVVYGAVLKQLLSTYGEAEAACENLQAILERMKEDGLEPDHRTYNHILDFHASVHAPQKAEEVXXXXXXXXXXXXXXXXXXXXVAHSRGSHNAMYRAVEEMNAKGWKGSRAAYLSMIAVMSKRRDYEGVLNTFRRMREETKKPTEAACVGAFRAAESLGQLEPAKQVFEHRMEVGLPPQEYAYVRMMVMCLKDGQPDQSLDYWRRLVCVNGLNGLTISPDTFNLAIKCATRAGNLEEMEAVVAMMESQGVVPTQATNVAALAGFE------RPRGAGAPCMEDAERAFAVIAKTGPPPGLALRQRQAVGYAHAGMWQKALDLFGSVVS 470
            MIR+RSLAA CARE               GA+A   VVA RA       ASAQPP A           +     Q G  Q G E ++ E + DLLR+H +AREDWT P  +++YER +L K L+RRI+ LA A K TK+ + I+ILDEGR+QGI  LVVY AVLKQLL+TY E++ A +NL+ ++ERM+EDGL+PD  TYNHILD HA +H  + A  V                    VAHSRG H+AMYRAVEEM AKGW+GSR A L MIAVM  RRDY+GVL T RRMREE+K PTEAA V A+RAAE+LGQ+E AKQ+F+HR E GLPP EY YV+MM + +K G+ ++ L+YWR+LVCV+G NG+ I P+T+NLAIKC    GN +EMEAV+AMME+Q VVPT  T  AAL G E      R RGA        +RAF  IA++GPPP   + QR+A G AHAG+WQ+A +LF  V++
Sbjct:    1 MIRVRSLAAACARECVRFSSAGSSTSNGVGARAATGVVALRALRESSSLASAQPPSAADEAH-----SEGAGVIQNGNQQHGGEFQRVEAVGDLLRQHARAREDWTGPLGLTDYERNRLPKELVRRIKRLAGANKRTKMRLVIQILDEGRQQGIKELVVYKAVLKQLLTTYRESKDAAQNLERVIERMEEDGLQPDVTTYNHILDLHALLHNSEAAVAVYEEMLSRGVEPNQRTASHMIVAHSRGCHDAMYRAVEEMYAKGWQGSRVACLGMIAVMGIRRDYDGVLYTIRRMREESKLPTEAAFVWAYRAAENLGQVETAKQLFQHRAEAGLPPAEYVYVKMMSILMKAGKAEECLEYWRQLVCVHGFNGVVIHPETYNLAIKCTMVVGNQDEMEAVLAMMEAQRVVPTDDTYSAALGGLEKWFTPHRARGA--------QRAFEAIARSGPPPSTRVLQRKAKGCAHAGLWQEAEELFSLVLA 471          
BLAST of mRNA_L-elsbetiae_contig5916.14389.1 vs. uniprot
Match: D7FK79_ECTSI (Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK79_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 1.770e-31
Identity = 86/235 (36.60%), Postives = 129/235 (54.89%), Query Frame = 0
Query:  232 VAHSRGSHNAMYRAVEEMNAKGWKGSRAAYLSMIAVMSKRRDYEGVLNTFRRMREETKKPTEAACVGAFRAAESLGQLEPAKQVFEHRMEVGLPPQEYAYVRMMVMCLKDGQPDQSLDYWRRLVCVNGLNGLTISPDTFNLAIKCATRAGNLEEMEAVVAMMESQGVVPTQATNVAALAGFERPRGAGAP-CMEDAERAFAVIAKTGPPPGLALRQRQAVGYAHAGMWQKALDLF 465
            +A + GS N MYR + EM+ +GW  +RAA+LS IA M +R+D EGVL    RM E++ +PTEAA   A  +A  LG+ + AK +FE R E GL P++  Y  MM+   K    ++SL YWR+LVC++G+ G+ I  +T   A++ A  + + +E++ +V M+  +       T   A+A      G   P   +  ER    + K G  P   +  R AV YA    W+KA  +F
Sbjct:   18 MAQAWGSSNDMYRTLAEMDERGWTPTRAAHLSAIAFMWQRKDTEGVLQMIERMLEKSYQPTEAAFAMALMSAGRLGRADLAKVLFEWRSESGLEPKQEIYSSMMLAHSKADLHEESLAYWRQLVCLDGVGGVAIDLETCRSALRSAIVSDHWDEVDTIVGMLRGKREATPDHTYKLAIAACRSRSGIDRPDYWQRVERTVEALRKAGMAPSSEVVCRVAVVYAQGKQWKKAAAMF 252          
BLAST of mRNA_L-elsbetiae_contig5916.14389.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 1.870e-24
Identity = 58/141 (41.13%), Postives = 88/141 (62.41%), Query Frame = 0
Query:  257 SRAAYLSMIAVMSKRRDYEGVLNTFRRMREETKKPTEAACVGAFRAAESLGQLEPAKQVFEHRMEVGLPPQEYAYVRMMVMCLKDGQPDQSLDYWRRLVCVNGLNGLTISPDTFNLAIKCATRAGNLEEMEAVVAMMESQG 397
            ++ AY SMI+ +    D++G+L T   M EE   PTEA     F  A  LG +E AK + E R + G+PP++  +V +MV   + G+P+  L+YWRRLVCV G++GL I P+TF LA++ A +    +E+EA++ MM+  G
Sbjct:    4 TKVAYQSMISGLRIGEDWQGILTTINEMLEEEVVPTEAGFAVGFMTARKLGDVEFAKMLLERRSQAGMPPRQDFFVNVMVTLGEAGKPEDFLEYWRRLVCVQGIDGLGIRPETFYLALRTAVKIKAWDEVEAIIGMMQEDG 144          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5916.14389.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LG81_ECTSI2.510e-14653.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYF7_9PHAE5.830e-14252.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK79_ECTSI1.770e-3136.60Pentatricopeptide repeat-containing protein, putat... [more]
D7FK81_ECTSI1.870e-2441.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..96
NoneNo IPR availableCOILSCoilCoilcoord: 156..183
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 112..354
coord: 236..404
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 299..440
e-value: 1.4E-15
score: 59.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 115..298
e-value: 1.1E-26
score: 96.0
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 191..232
e-value: 2.2E-8
score: 34.1
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 246..292
e-value: 0.0058
score: 16.7
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 451..466
e-value: 0.67
score: 10.3
coord: 369..398
e-value: 0.098
score: 13.0
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 369..401
e-value: 1.2E-5
score: 23.1
coord: 191..223
e-value: 4.2E-5
score: 21.4
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 188..222
score: 10.687
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 366..400
score: 9.964
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 327..357
score: 5.47
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..291
score: 8.298
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 148..187
score: 6.237
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 292..326
score: 5.985

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5916contigL-elsbetiae_contig5916:4435..11594 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5916.14389.1mRNA_L-elsbetiae_contig5916.14389.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5916 4435..11594 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5916.14389.1 ID=prot_L-elsbetiae_contig5916.14389.1|Name=mRNA_L-elsbetiae_contig5916.14389.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=471bp
MIRIRSLAATCARECVRSASASGRSSGRGGAKATVVAARAFSASAQPPFA
NGSIGPAVGPEDDLAAFQPGQDQQGNEEKAEDLEDLLRRHTQAREDWTDP
PEMSEYERAQLSKSLLRRIRGLAKARKSTKVGIAIKILDEGRRQGITSLV
VYGAVLKQLLSTYGEAEAACENLQAILERMKEDGLEPDHRTYNHILDFHA
SVHAPQKAEEVYEEMISKGLEPDQKTMSHMIVAHSRGSHNAMYRAVEEMN
AKGWKGSRAAYLSMIAVMSKRRDYEGVLNTFRRMREETKKPTEAACVGAF
RAAESLGQLEPAKQVFEHRMEVGLPPQEYAYVRMMVMCLKDGQPDQSLDY
WRRLVCVNGLNGLTISPDTFNLAIKCATRAGNLEEMEAVVAMMESQGVVP
TQATNVAALAGFERPRGAGAPCMEDAERAFAVIAKTGPPPGLALRQRQAV
GYAHAGMWQKALDLFGSVVS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat