prot_L-elsbetiae_contig590.14369.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig590.14369.1
Unique Nameprot_L-elsbetiae_contig590.14369.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length524
Homology
BLAST of mRNA_L-elsbetiae_contig590.14369.1 vs. uniprot
Match: D7FNQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ8_ECTSI)

HSP 1 Score: 521 bits (1341), Expect = 2.260e-178
Identity = 322/540 (59.63%), Postives = 360/540 (66.67%), Query Frame = 0
Query:    1 MDGAIAVERGQLASLLLVMFVAAGAPALLAFILKVFFSIRLRSRLLHDDRGRFVGVFFILATKVVSVPALCGGGRLCERRVHTLTTDDLDCDDXXXXXXXTNALEGATAR----KMNSGREEEEHKGGDQSPQQGVRGSGAGSSRPTTPLERKEESWCGGERERGRSANRKIEG-SKNRTELDLPPRHWMCTVCKKVNMLPENWTGRAGKVIQVVIKRKEVDKQAMYGAFKTRPGVPLCGKCHTPFNYSWRSGGDSDQTPQQQRQRQLLEAALSRPATAASSAPSAAPGTD----ADVGKDEDQGTGGLSFAGF-LGVLTKAVGFMHALVSRSRRRRD-KNKLIDAGGGAEAGDAAVEPELWYGREFRRQLTTYFKPELERPSLSSPLAQGGGRMGGGGRYPVGARVACFAGKEAWYPGAVVASRENNTYDVRFDNGDIAQHVFPHMIRFEPIHTDSHLLCFYYGLALATAVAWPLAGFGYFYSSTTADATAI-----VALPALVAGVAGALAVAVQFCEIYAENKSAGLGVTAKFAAIF 524
            MDGAI VER  LA+LLLVMF AA  PA+LA +LK+FFS+RLRS L+ DDR RFVGVFF LATK VSVPA CGGGRLCERRVH L  D    D XXXXXXX    E A  R    K   G  +EE   GD   Q+   G  +G                        SANR  +G ++ RTELDLPPRHWMCTVCKKVNMLP+ W GRAGK + VVIKRK VD +AMYG FKT+PGVPLC KC TPFNYSWR+GG SD    QQRQ++LL+AALSRP  AAS+A +A   TD    A V    D   GG++ A     VL KA  F+ AL S  RRRR   +K  D  GG+   DA  EPELWYGREFRRQL TYFKPEL RP+             GG RYPVGARVACFAGK+AWYPGAV ASREN+TYDVR+DNGDIAQHVF HMIRFEP+H DS L C YYGLALA A AWPLAG  YF S++ A          VALPALV G AG LAVA QF EIYA+N+S GL V  KFAA++
Sbjct:    1 MDGAIPVERTHLAALLLVMFAAAAVPAVLAAVLKMFFSVRLRSSLVRDDRRRFVGVFFFLATKAVSVPAFCGGGRLCERRVHALKDDATSTDXXXXXXXXXRDNEAALERGGGGKTIGGDAQEE---GDL--QRAPLGGSSGRRXXXXXXXXXXXXXXXXXXXXXXSANRLADGGTRKRTELDLPPRHWMCTVCKKVNMLPDEWNGRAGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCRTPFNYSWRNGGGSDNL-MQQRQQRLLDAALSRPTNAASTAVAAGSATDPALSAAVDGPMDAENGGVAAAAVHRRVLAKAARFIRALCSPCRRRRAASSKPFDGRGGS---DAVEEPELWYGREFRRQLMTYFKPELSRPAA------------GGERYPVGARVACFAGKDAWYPGAVAASRENDTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAAXXXXXXXXXXVALPALVVGTAGTLAVAFQFWEIYADNRSTGLCVATKFAAVW 519          
BLAST of mRNA_L-elsbetiae_contig590.14369.1 vs. uniprot
Match: A0A6H5L3X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3X8_9PHAE)

HSP 1 Score: 381 bits (978), Expect = 2.140e-123
Identity = 213/342 (62.28%), Postives = 241/342 (70.47%), Query Frame = 0
Query:  194 MLPENWTGRAGKVIQVVIKRKEVDKQAMYGAFKTRPGVPLCGKCHTPFNYSWRSGGDSDQTPQQQRQRQLLEAALSRPATAASSAPSAAPGTDADVGKDED----QGTGGLSFAGF-LGVLTKAVGFMHALVSRSRRRRD-KNKLIDAGGGAEAGDAAVEPELWYGREFRRQLTTYFKPELERPSLSSPLAQGGGRMGGGGRYPVGARVACFAGKEAWYPGAVVASRENNTYDVRFDNGDIAQHVFPHMIRFEPIHTDSHLLCFYYGLALATAVAWPLAGFGYFYSSTTA-----DATAIVALPALVAGVAGALAVAVQFCEIYAENKSAGLGVTAKFAAIF 524
            MLP+ W GR GK + VVIKRK VD +AMYG FKT+PGVPLC KCHTPFNYSWR+GG SD+   QQRQ++LL+AALSRP +AAS+A +A   TD  +    D       GG++ A     VL KA  F+  + S+ RRRR   +K  D  GGA   DA  EPELWYGREFRRQL TYFKPEL RP+ S            GGRYPVGARVACFAGK+AWYPGAV ASRENNTYDVR+DNGDIAQHVF HMIRFEP+H DS L C YYGLALA A AWPLAG  YF S++ A      A A+VALPALV G AG LAVA Q  EIYA+N+S GL V  KFA IF
Sbjct:    1 MLPDEWDGRTGKDVHVVIKRKAVDTRAMYGLFKTKPGVPLCSKCHTPFNYSWRNGGGSDKL-MQQRQQRLLDAALSRPTSAASTAVAAGSATDPALSAAADGLMNAENGGVAAAAVHRRVLAKAARFIRGIYSQCRRRRAASSKTFDGRGGA---DAVEEPELWYGREFRRQLMTYFKPELSRPAAS------------GGRYPVGARVACFAGKDAWYPGAVAASRENNTYDVRYDNGDIAQHVFSHMIRFEPVHADSRLTCCYYGLALAAAAAWPLAGSWYFSSTSAATDAATSAAALVALPALVVGTAGTLAVAFQIWEIYADNRSTGLCVATKFAVIF 326          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig590.14369.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNQ8_ECTSI2.260e-17859.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3X8_9PHAE2.140e-12362.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.140coord: 387..441
e-value: 2.1E-9
score: 38.8
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 321..447
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 300..320
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..33
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 53..70
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 71..299
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 448..473
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 501..524
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 34..52
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 474..478
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 479..500
NoneNo IPR availableTMHMMTMhelixcoord: 448..470
NoneNo IPR availableTMHMMTMhelixcoord: 50..72
NoneNo IPR availableTMHMMTMhelixcoord: 480..502
NoneNo IPR availableTMHMMTMhelixcoord: 15..37
NoneNo IPR availableTMHMMTMhelixcoord: 299..321

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig590contigL-elsbetiae_contig590:16106..18680 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig590.14369.1mRNA_L-elsbetiae_contig590.14369.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig590 16106..18680 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig590.14369.1 ID=prot_L-elsbetiae_contig590.14369.1|Name=mRNA_L-elsbetiae_contig590.14369.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=524bp
MDGAIAVERGQLASLLLVMFVAAGAPALLAFILKVFFSIRLRSRLLHDDR
GRFVGVFFILATKVVSVPALCGGGRLCERRVHTLTTDDLDCDDNLDCGDN
TNALEGATARKMNSGREEEEHKGGDQSPQQGVRGSGAGSSRPTTPLERKE
ESWCGGERERGRSANRKIEGSKNRTELDLPPRHWMCTVCKKVNMLPENWT
GRAGKVIQVVIKRKEVDKQAMYGAFKTRPGVPLCGKCHTPFNYSWRSGGD
SDQTPQQQRQRQLLEAALSRPATAASSAPSAAPGTDADVGKDEDQGTGGL
SFAGFLGVLTKAVGFMHALVSRSRRRRDKNKLIDAGGGAEAGDAAVEPEL
WYGREFRRQLTTYFKPELERPSLSSPLAQGGGRMGGGGRYPVGARVACFA
GKEAWYPGAVVASRENNTYDVRFDNGDIAQHVFPHMIRFEPIHTDSHLLC
FYYGLALATAVAWPLAGFGYFYSSTTADATAIVALPALVAGVAGALAVAV
QFCEIYAENKSAGLGVTAKFAAIF
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