prot_L-elsbetiae_contig5893.14361.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig5893.14361.1
Unique Nameprot_L-elsbetiae_contig5893.14361.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length828
Homology
BLAST of mRNA_L-elsbetiae_contig5893.14361.1 vs. uniprot
Match: A0A6H5L8R5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8R5_9PHAE)

HSP 1 Score: 241 bits (615), Expect = 1.400e-63
Identity = 177/378 (46.83%), Postives = 217/378 (57.41%), Query Frame = 0
Query:  452 ARTLTRMHDDFRNTLKLFIKDSHQHTISVVDEFLALGTAPPSTLCAVIVTALLRSRCSVRNECLRRQLRAMLDVDSGCWEPPDIVDVPGWLEEVM-LGVTTGKSSKRPKDPPSYAVMEARTIVLEVVVDYLVAGRRELSSIPPPPLQDRPGPTAAVSTRALQFFPQKEKGKPRKTWKKSTQLQKEAELALLDTRNAVETSAAWAVGVWGLAGAGAGAPQNXXXXXXXXESPALIRARLLATRLLAEVVETCGLPVHEACEAIRDQMNSFSGAPGVAVAGAGAAKGGAGPREPAAAAAXXRXXXXXXXXAQEAGCRGLGAAARGGLVRALLGRPFCPELARVLREDLGVAGDGYTREDAGGV--GRLRALLSRVLQRAQ 826
            AR LTRM D  R TL  F+K + + T++VV EFLALGTAPPS+LC  IV++LL SRC VR+ECLR QLRAMLDVD   W PPD  D PGWLE +M + +T   ++ + +DPPS  V+ A  IVLE+VV+YL                         + RA+ FF       P    K   +     E+A    ++AV  SA WAVG WGL GA   +           ESP L+R RLLAT+LLAEVV++CGLP  EAC+AI DQM+ F+G    A A A                 XX XXXXXXX A+    RGL  AARGGLVRALLGR FC ELAR L      +G G     +GG   GRL+A+LSRV+ RA+
Sbjct:  632 ARALTRMDDHVRLTLNTFVKCAPETTVAVVKEFLALGTAPPSSLCGTIVSSLLESRCRVRSECLRMQLRAMLDVDPNVWSPPDEDDAPGWLENLMGIILTDPPAAAKRRDPPSDQVLGAHAIVLELVVEYLAXXXXXXXXX--------------XAERAMHFF-----ALPVTKGKGMRKPPPPEEIARNLAKHAVRKSAEWAVGAWGLQGASRSSSSRRRRRPR--ESPELVRFRLLATKLLAEVVDSCGLPADEACDAIVDQMDLFAGGVPAASASAXXXXXXXXXXXXXXXXXXXXXXXXXXXVAE----RGLRNAARGGLVRALLGRTFCAELARALLRADSSSGSGRVGVPSGGXXXGRLQAMLSRVVGRAE 984          
BLAST of mRNA_L-elsbetiae_contig5893.14361.1 vs. uniprot
Match: D8LSY6_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY6_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 1.590e-50
Identity = 131/272 (48.16%), Postives = 163/272 (59.93%), Query Frame = 0
Query:  452 ARTLTRMHDDFRNTLKLFIKDSHQHTISVVDEFLALGTAPPSTLCAVIVTALLRSRCSVRNECLRRQLRAMLDVDSGCWEPPDIVDVPGWLEEVMLGVTTGKSS-KRPKDPPSYAVMEARTIVLEVVVDYLVAGRRELSSIPPPPLQDRPGPTAAVSTRALQFFP-QKEKGKPRKTWKKSTQLQKEAELALLDTRNAVETSAAWAVGVWGLAGAGAGAPQNXXXXXXXXESPALIRARLLATRLLAEVVETCGLPVHEACEAIRDQMNSFSG 721
            AR LTRM D FR TL  F+K + + T+++V EFLALGTAPPS+LC  IV++LL SRC +R+ECLR QLRAMLDVD   W PPD  D PGWLE +M  + T   +  + +DPPS  V+ A  IVLE+VVDYL                           RA+ FF     KG+ R+            E+A    ++AV  SA WAVG WG  GAG  +   XXXXX   ESP L+R RLL+ +LLAEVVE+C LP  EAC+AI DQM+ F+G
Sbjct:  534 ARVLTRMDDHFRLTLNTFVKYAPETTVAIVKEFLALGTAPPSSLCGTIVSSLLESRCRIRSECLRLQLRAMLDVDPNVWSPPDKDDAPGWLENLMGVILTDPPAVAKRRDPPSDQVLGAHAIVLELVVDYLAXXXXXXXXXX----------XXXXXERAMHFFALPATKGRGRRKXXXPQ------EVARNLAKHAVGKSAEWAVGAWGSEGAGRSSXXXXXXXXPQ-ESPELVRFRLLSAKLLAEVVESCALPADEACDAIVDQMDLFAG 788          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5893.14361.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L8R5_9PHAE1.400e-6346.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSY6_ECTSI1.590e-5048.16Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 669..828
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..649
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 650..668

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5893contigL-elsbetiae_contig5893:4213..8938 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5893.14361.1mRNA_L-elsbetiae_contig5893.14361.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig5893 4213..8938 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig5893.14361.1 ID=prot_L-elsbetiae_contig5893.14361.1|Name=mRNA_L-elsbetiae_contig5893.14361.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=828bp
RRVVRRGLPGLLQLGQTGGVREIVGGAMATRPEVQCRTSGDGPGTASEFV
LMTTHSTKAILITLLDGDNIVEVDSTALGISAGLSVSKEDMTPQAGVYDE
QVVLRTANMPEGIVQLKASRAVRIIGKRTLLSASPRNPGPSPENAAQAFP
GQAARASPKQAARWSGGGTTWVVPGAEHSLLVGDVLELGTGGVGAAFRAR
FSFILHLASSVAAAEPAGGGGAGAGGGSSGGSSGGSSGGGDGGGGGGGGN
KRRDDDGARAGAGAGATSTVPKLPPPTRIDGGVPEPAAPLQEPQAVAPAA
AARVDADLSLVEAPPPTTIENDQTEAPPPRPPPPPPPTTIENDQPETPPP
SPPPPPPPTTTIENDQPEAPPPPPPPSSPFRSLTLKPSPSPCTPSPSAVE
EEVRAASSSSSSSSSSSCSSSSDQRSATAPSHAAGGGAAAPPMAEERSTP
PARTLTRMHDDFRNTLKLFIKDSHQHTISVVDEFLALGTAPPSTLCAVIV
TALLRSRCSVRNECLRRQLRAMLDVDSGCWEPPDIVDVPGWLEEVMLGVT
TGKSSKRPKDPPSYAVMEARTIVLEVVVDYLVAGRRELSSIPPPPLQDRP
GPTAAVSTRALQFFPQKEKGKPRKTWKKSTQLQKEAELALLDTRNAVETS
AAWAVGVWGLAGAGAGAPQNGRRRRRRRESPALIRARLLATRLLAEVVET
CGLPVHEACEAIRDQMNSFSGAPGVAVAGAGAAKGGAGPREPAAAAAAGR
AAALGAAGAQEAGCRGLGAAARGGLVRALLGRPFCPELARVLREDLGVAG
DGYTREDAGGVGRLRALLSRVLQRAQGG
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