mRNA_L-elsbetiae_contig5845.14298.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5845.14298.1 vs. uniprot
Match: D7FHX8_ECTSI (PA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHX8_ECTSI) HSP 1 Score: 372 bits (955), Expect = 1.110e-117 Identity = 278/669 (41.55%), Postives = 343/669 (51.27%), Query Frame = 1 Query: 49 MQKMLQSRQTKPGQLHPDVDNDSREFMTLRVRPGRRPGRATRTHGMYSPMTKEEADQEQGRWFLSYSTGPLSSGRVDVTVAAFGSEPDGCDALPVVMAIPEDGCLPLRNAQKAEGAHVLVRRGGCSFLAKALTVRNSGGRSLVVVDEGAGRLRMEADQGGAVDIPVVMVSQQDGGSLKKMAVSTSRATGKVTASLVVTAACLPQRLAPPQPPPRNQASSRPDRRSRHLSSAGATVIPGRLKDSNAENQIPGAQAVRAAGVGAGSTTVKSAVDRIGSEKQSDAPQSGTSTGGEGRGAEAAAETAVAGADGEAGSD-----------------GVQHSMPTRCRERSSGKLRGGDLILNLHLDLTSTNSPGDASPGNGTPAIFVTILAGDCETPLAQEEGKESTRAATTNGVRAIVLLPPDADCSVERQIRLGEKLSPAMLVVIAGATDDTNITHLVSSTTDIVFSSSGVIGNPASPEYNKKRSQAPAAAALGRSQKAKRGAGNPAYGDGREERPPRGDGERPGGVDQRQRLQQTWGDDEERRGRSKGGQEEGADCPPLTIIVGHDEGKRVLEWLHTVGGGAVAASVAEREDVGKLWRDVAWASDPANWPKGLKQRRRILNRLRKTHSPEHAGRGGDGDGAAERKASATKWSLIERYARAAEEEHDISLST 2004 MQ++++S+ Q D D +F+TLRVRPG++PGR ++ HGMYSPMT+EEA+QEQ W LS STGPL SG VDVTVAAFG E D C ALPVV AIPEDGCLPL NAQ+ +GAHVLVRRG CSFLAKAL V NSGG S+VV DEGAGRLRMEA++G V IPVVMVS+ DG +L+K+A STSRATGKVTA+LV+ AACL + P P PR + S +R SR L GA +D + G A+ A A ++I +++ +P + G+G AE A A A AD E ++ G + CR+RSSG+LRGGDL L+L+ ST P SPG+GT A V IL G C+ + E + ++ A + ++LLPPD CS+E Q G+ L +L V G GDG G GE RS GG GGG V + ER ++GKLW DV WASD NWPKG KQRRRILNRLRKTHSPEH GR DGA+ R SAT+WSL+ER A ++ D ST Sbjct: 1 MQRVVESKWQDAAQRQVGED-DVGKFITLRVRPGKQPGRVSQGHGMYSPMTREEAEQEQAPWHLSLSTGPLPSGTVDVTVAAFGGEADSCAALPVVSAIPEDGCLPLLNAQQVKGAHVLVRRGRCSFLAKALAVSNSGGASVVVADEGAGRLRMEAEEGQTVGIPVVMVSKLDGEALQKLAASTSRATGKVTATLVINAACLHR--GKPAPSPRREISPPLERGSRRLPIPGARNPASGEEDKAPTDDKRGPPAIEMA-----------AGEKINNQRGDVSPSLVATPPGQGE-AEVADTPAAARADVEVITNRGGEEDRGGGKEVEEEGGKERLTLPECRQRSSGQLRGGDLTP-LNLEEESTTIPEMDSPGSGTTAT-VAILGGPCDNTRSPHEDETTSPAVSKMKGTTVLLLPPDPACSIESQE--GKHLLGWVLRVRGG-------------------------------------------------------------GDGS------GSGE-----------------------RSFGGN----------------------------GGGVVTVDMVERHELGKLWGDVVWASDLTNWPKGSKQRRRILNRLRKTHSPEHVGR----DGASSRTESATRWSLVERAYAALQDTDDAGDST 528
BLAST of mRNA_L-elsbetiae_contig5845.14298.1 vs. uniprot
Match: UPI000697A3A3 (T9SS-dependent M36 family metallopeptidase n=1 Tax=Lacinutrix sp. Hel_I_90 TaxID=1249999 RepID=UPI000697A3A3) HSP 1 Score: 60.8 bits (146), Expect = 8.180e-6 Identity = 34/85 (40.00%), Postives = 48/85 (56.47%), Query Frame = 1 Query: 331 VVMAIPEDGCLPLRNAQKAEGAHVLVRRGGCSFLAKALTVRNSGGRSLVVVDEGAGRLRMEADQGGA-VDIPVVMVSQQDGGSLK 582 +V+ P +GC L N G +V RG C F KAL +N+G ++VVV+ G + M GA V IPV+M+SQ DG ++K Sbjct: 455 LVLVNPNEGCSALVNGAAISGNIAVVDRGSCEFGLKALNAQNAGAIAVVVVNNTTGVINMGPGANGASVTIPVIMISQADGATIK 539
BLAST of mRNA_L-elsbetiae_contig5845.14298.1 vs. uniprot
Match: A0A7X5QVG8_9GAMM (Serine protease n=4 Tax=Luteibacter TaxID=242605 RepID=A0A7X5QVG8_9GAMM) HSP 1 Score: 60.1 bits (144), Expect = 1.120e-5 Identity = 35/108 (32.41%), Postives = 54/108 (50.00%), Query Frame = 1 Query: 262 SSGRVDVTVAAFGSEPDGCD-ALPVVMAIPEDGCLPLRNAQKAEGAHVLVRRGGCSFLAKALTVRNSGGRSLVVVDEGAGRLRMEADQGGAVDIPVVMVSQQDGGSLK 582 ++G + AAFG + A V +P DGC L NA + G L+ RG C F KAL + +G ++++ + + V+IPV++VSQ DG +LK Sbjct: 257 AAGDYEYAQAAFGPVATSANFAGSVARGVPNDGCAALTNAAEVAGKVALIDRGTCDFTVKALNAQAAGASAVLLANNQPAAVTPGGTPASPVNIPVILVSQADGNTLK 364
BLAST of mRNA_L-elsbetiae_contig5845.14298.1 vs. uniprot
Match: A0A1L3EQL8_9GAMM (PA domain-containing protein n=4 Tax=Luteibacter TaxID=242605 RepID=A0A1L3EQL8_9GAMM) HSP 1 Score: 59.7 bits (143), Expect = 1.500e-5 Identity = 33/98 (33.67%), Postives = 48/98 (48.98%), Query Frame = 1 Query: 331 VVMAIPEDGCLPLRNAQKAEGAHVLVRRGGCSFLAKALTVRNSGGRSLVVVDEGAGRLRMEADQGGAVDIPVVMVSQQDGGSLKKMAVSTSRATGKVT 624 VV A P DGC + NA G L+ RG C F KAL + +G ++++ + + V+IPV++VSQ DG +LK + GK T Sbjct: 299 VVQATPNDGCAAITNASAIAGKTALIDRGTCDFATKALNAQAAGASAVLLANNQPAAVTPGGTPTSPVNIPVILVSQTDGNTLKANLAGLTGTVGKGT 396
BLAST of mRNA_L-elsbetiae_contig5845.14298.1 vs. uniprot
Match: UPI001FF90735 (serine protease n=1 Tax=Luteibacter sp. 321 TaxID=2911537 RepID=UPI001FF90735) HSP 1 Score: 58.9 bits (141), Expect = 2.590e-5 Identity = 33/98 (33.67%), Postives = 51/98 (52.04%), Query Frame = 1 Query: 331 VVMAIPEDGCLPLRNAQKAEGAHVLVRRGGCSFLAKALTVRNSGGRSLVVVDEGAGRLRMEADQGGAVDIPVVMVSQQDGGSLKKMAVSTSRATGKVT 624 VV A+P DGC + NA G L+ RG C F K+L + +G ++++ + + V+IPV++VSQ DG +LK + + TG VT Sbjct: 293 VVQAVPNDGCNAITNASAIAGKVALIDRGTCDFTVKSLNAQAAGATAVLLANNQPAAVTPGGTPASPVNIPVILVSQADGNTLKA---NLAGLTGSVT 387
BLAST of mRNA_L-elsbetiae_contig5845.14298.1 vs. uniprot
Match: A0A6A5AH87_9STRA (PA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AH87_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 5.570e-5 Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 1 Query: 271 RVDVTVAAFGSEPDGCDALPVVMAIPEDGCLPLRNAQKAEGAHVLVRRGGCSFLAKALTVRNSGGRSLVVVDEGAGRLRM-EA--DQGGAVDIPVVMVSQQDGGSLK 582 ++ VA FGS +V +P ++NA G +V+RG CSF AKA +++ +G +++ + +RM EA +G VDIPV+MV Q G SL+ Sbjct: 4 QIPAPVATFGSHSPSTYTGALVHVVPATAFPSIQNASALRGRIAVVQRGDCSFAAKAKSIQAAGAIGMILTNSSEELVRMGEAFEREGAGVDIPVLMVGQVMGKSLR 110
BLAST of mRNA_L-elsbetiae_contig5845.14298.1 vs. uniprot
Match: A0A3B7RID1_9BACT (T9SS C-terminal target domain-containing protein n=2 Tax=Hymenobacter oligotrophus TaxID=2319843 RepID=A0A3B7RID1_9BACT) HSP 1 Score: 57.8 bits (138), Expect = 6.950e-5 Identity = 31/83 (37.35%), Postives = 45/83 (54.22%), Query Frame = 1 Query: 343 IPEDGCLPLRNAQKAEGAHVLVRRGGCSFLAKALTVRNSGGRSLVVVDEGAGR-LRMEADQGGAVDIPVVMVSQQDGGSLKKM 588 I E GC L N + +V RGGC F KAL + +G R++VV++ G + M V IP +M+SQQDG +L+ + Sbjct: 412 ISEQGCSALSNPEAVANNIAVVYRGGCDFWLKALNAQQAGARAVVVINNAPGAPIVMGGTPAAPVTIPALMISQQDGATLRAL 494 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5845.14298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5845.14298.1 >prot_L-elsbetiae_contig5845.14298.1 ID=prot_L-elsbetiae_contig5845.14298.1|Name=mRNA_L-elsbetiae_contig5845.14298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=668bp MQPLPQQFSPGEFAEAMQKMLQSRQTKPGQLHPDVDNDSREFMTLRVRPGback to top mRNA from alignment at L-elsbetiae_contig5845:1725..6381+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5845.14298.1 ID=mRNA_L-elsbetiae_contig5845.14298.1|Name=mRNA_L-elsbetiae_contig5845.14298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4657bp|location=Sequence derived from alignment at L-elsbetiae_contig5845:1725..6381+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5845:1725..6381+ >mRNA_L-elsbetiae_contig5845.14298.1 ID=mRNA_L-elsbetiae_contig5845.14298.1|Name=mRNA_L-elsbetiae_contig5845.14298.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4008bp|location=Sequence derived from alignment at L-elsbetiae_contig5845:1725..6381+ (Laminarionema elsbetiae ELsaHSoW15)back to top |