mRNA_L-elsbetiae_contig5830.14275.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7FXJ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ3_ECTSI) HSP 1 Score: 400 bits (1027), Expect = 2.850e-131 Identity = 221/451 (49.00%), Postives = 273/451 (60.53%), Query Frame = 1 Query: 25 LGSWAGQASGWEDCTISPDDEWRRATERTPALRMRYEFPRRYTCEMEIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRNGGKGDADGKPYRLQVRDCWRYPAEEKLEDLELCWDLYERDFPLAPATSAPA--------------------TPAEAGP--GSTPA----------------------------------EPSVEARRDESEGAPGQGETSVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 LG G+ASGW +C + P D W+ AT+ TPALRMRY++ RRYTC E AS+ AASY F+S CT F P ++SCL+GRRV+F+GDSLS QQ DSL+GML WHP W+ NPRN DGK Y V DCW +P+ ++ +E C+D DFP P +PA+ P G T A E E R+E E A + E SVH R S G +W +RAV DFNETRASD+FVVNFG HY + P+ D +FK VFPILDEMA +G+ ATVVWREIAP HFP+VN S++ F+ LE + ++ A CTGTPP V+ RN WVE+Y+ D GL D +KLLRIY+MS+PRG+AHHTCH A PSTM+Q + + +DCRHWS TGVVEEWNALMLNHLCP Sbjct: 35 LGVIVGKASGWVECLMPPQDAWKAATDTTPALRMRYDYERRYTCRDEKASFLAASYVFNSTCTARRFSGPPDVVSCLKGRRVIFLGDSLSNQQGDSLLGMLGWHPDWMTKGNPRNAKVITEDGKRYYTLV-DCW-HPS---IKGVERCYDYSTSDFPGPTTLGQPGDGPSGEATTQSRKNMARSTTSPAKRRPPLGGTKADSTKSVXXXXXXXXXXXXRKMQAREWEDGQEAAEEAEAEGYREEVE-AVDESEISVHMRMLSKPSGEHWLTRAVSDFNETRASDIFVVNFGGHYHDFPEEDDSFKRDVFPILDEMAVLGEKATVVWREIAPTHFPAVNGSFDAFDGLESKDRK-ASCTGTPPEVFDRNVWVENYVRDNGLEDRIKLLRIYDMSMPRGAAHHTCHFAPPSTMNQSEAAIDGRGVSGPLDCRHWSETGVVEEWNALMLNHLCP 478
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: A0A6H5JEC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC7_9PHAE) HSP 1 Score: 397 bits (1020), Expect = 2.330e-130 Identity = 217/421 (51.54%), Postives = 262/421 (62.23%), Query Frame = 1 Query: 52 GWEDCTISPDDEWRRATERTPALRMRYEFPRRYTCEM-EIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRNGGKG-DADGKPYRLQVRDCWRYPAEEKLEDLELCWDLYERDFPLAPATSAPATPAEAGPGSTP---AEPSVEARRDES------EGAPGQGE----------------------TSVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCPAA 1215 GW +C+ISP DEW+ ATE T A+RMR E+ R YTC E AS+ AA+Y+FDS C FF+P + CL GRRV+F+GDSLS QQ DSLVGML WHP W+ PRN + DG Y V DCW +P + +E C+D+Y+ DFP +P P+ GST A S E + D EG G E TSVH R S A +W RA++D+NETRASDV VVNFG HY TP+G+ +FK V ILD+MAEIG+TATVVWREIAP HFP N ++E+F +E + ACCTGTP +V RN WVEDY+ D GL+D VKLLRIY+MS+PRG+AHHTCH+A PSTMDQ C DCRHWS TGVVEEWNAL+LNHLCP A Sbjct: 54 GWNECSISPQDEWKEATEDTLAMRMRAEYERMYTCTTREDASFMAANYYFDSPCLAKRFFYPTDVRECLRGRRVIFLGDSLSNQQGDSLVGMLGWHPEWMPRGGPRNRKRAVRKDGTRYFTLV-DCW-HPPGGSIPGIERCYDVYDTDFPFEGNHRSPGKPSLEIHGSTTDDGAFASTEGKHDRRTRRRSLEGDEGGVEXXXXXXXXXXXXXXXXTKANQTTSVHVRMTSTADDRHWLRRALRDYNETRASDVVVVNFGPHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPGENGTYESF--VELDLGNNACCTGTPVKVLDRNAWVEDYVRDNGLSDRVKLLRIYDMSVPRGAAHHTCHLAPPSTMDQAGAESDYCHSVYATDCRHWSETGVVEEWNALLLNHLCPMA 470
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: A0A6H5KLA9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLA9_9PHAE) HSP 1 Score: 354 bits (908), Expect = 3.040e-113 Identity = 212/473 (44.82%), Postives = 261/473 (55.18%), Query Frame = 1 Query: 25 LGSWAGQASGWEDCTISPDDEWRRATERTPALRMRYEFPRRYTCEMEIASYEAA---SYFFDSRCTGDGFFFPERILSCLE-------------------GRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRNGGKGDADGKPYRLQVRDCWRYPAEEKLEDLELCWDLYERDFPLAPATSAPATPAEAG--------------PGSTPAEPSVEARRDES------EG---------------------------APGQGET---------SVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 LG G+ASGW++C +SP D W+ AT+ T ALRMRYE+ RRYTC E + + S R + D P +LSCL+ GRRV+F+GDSLS QQ DSL+GML WHP W+ N RN DGK Y V DCW +P+ + +E C+D DFP P T +G P ST S+ R+ +S EG A G GE SVH R S G +W +RAV DFNETRASD+FVVNFG HY + P+ D +FK VFPILDEMA +G+ ATVVWREIAP HFP+VN S++ F+ LE + ++ A CTGTPP V+ RN WVE+YL GL D + LLRIY+MS+PRG+AHHTCH A PS M+Q + +DCRHWS TGVVEEWN LMLNHLCP Sbjct: 27 LGVVVGKASGWKECLVSPQDAWKAATDTTAALRMRYEYERRYTCRDEKGALQGPTPNSLAHARRKSDDS---PPLVLSCLDANSLKRLNKESTSMQVCLKGRRVIFLGDSLSNQQGDSLLGMLGWHPDWMTKENLRNAKVITEDGKRYYTLV-DCW-HPS---ISGVERCYDYSTSDFP-GPTTFGQPGDGPSGEARKQSRKKVFRSTPSSTKRSTSLGGRKADSTKSASTEGDNSRNKHGRKLQPREWEDGQEAAEEAEAEGYGEEVEAVDENEISVHMRMLSKPSGEHWLTRAVSDFNETRASDIFVVNFGGHYHDFPEEDDSFKRDVFPILDEMAVLGEKATVVWREIAPTHFPAVNGSFDAFDCLESKDRK-ASCTGTPPEVFDRNVWVENYLRTNGLEDRIHLLRIYDMSVPRGAAHHTCHFAPPSPMNQSEAASDGGGASGPLDCRHWSETGVVEEWNTLMLNHLCP 489
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7FL04_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL04_ECTSI) HSP 1 Score: 351 bits (900), Expect = 7.130e-112 Identity = 203/479 (42.38%), Postives = 262/479 (54.70%), Query Frame = 1 Query: 25 LGSWAGQASGWEDCTISPDDEWRRATERTP--ALRMRYEFPRRYTCEMEIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRNGGKGDADGKPYRLQVRDCWRYPAEEKLEDLELCWDLYERDFPLAPATSAP---------------ATPAEAGPGSTPAEPSVEARRDESEGAPGQG-----------------------------------------------------------ETSVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQ--------GTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 LG G+ASGW++C++SP+D W A RT ALRMR+++ RRYTC+ + ASY AASY+FDS CT F P + SCL+GRRV+F+GDSLS QQ DSL+GML WHP W+ PRN DG + V DC+ +P+ L ++ C+D FP A+ P AT +E S + + +++G G G E SVH R S G +W +A DFNETRASDVFVVNFG HY + P+ D FK + P+L +MA +G+ ATV+WREIAP HFP+ N S++++ L+ + C TGTPP+V+ RN+WVE+Y+ D GL D +KLLRIY+MS+PRG+AHHTCH A PSTM Q G S P+ DCRHWS TGVVEEWN LMLNHLCP Sbjct: 37 LGVVVGKASGWKECSVSPEDRWSPAPSRTSTAALRMRFDYERRYTCDSKHASYLAASYYFDSPCTARRFPSPPDVTSCLKGRRVIFLGDSLSNQQGDSLMGMLGWHPDWMTKGAPRNSKLDIEDGSKHFTLV-DCY-HPS---LGGIQRCYDYSTSAFPPPAASDHPVSREKSRKKKSIRAGATSSEKVKLSMRGRTTTAIKTAQTKGTRGLGHKRRKSQRHGRWWXXGEGHGQEEEEEVEXXXXXXXXXXXXXXXXXXXXXYGETFDVDGNEISVHMRMLSRPSGEHWLLKAASDFNETRASDVFVVNFGGHYHDIPEDDEEFKTDMIPVLQDMAVLGQNATVIWREIAPTHFPAANGSYDSYADLDAKDLTPRC-TGTPPKVFDRNEWVENYVRDNGLEDRIKLLRIYDMSVPRGAAHHTCHFAPPSTMKQPRVKNDGRGAASGPI-------DCRHWSETGVVEEWNTLMLNHLCP 502
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7G6G2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6G2_ECTSI) HSP 1 Score: 258 bits (659), Expect = 1.560e-77 Identity = 124/198 (62.63%), Postives = 146/198 (73.74%), Query Frame = 1 Query: 616 TSVHARDYSFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 TSVH R S A +W RA++D+NETRASDV VVNFGAHY TP+G+ +FK V ILD+MAEIG+TATVVWREIAP HFP+ N ++E F +E + ACCTGTP +V RN WVEDYL + GL+D VKLLRIY+MS+ RG+AHHTCH+A PSTMDQ C DCRHWS TGVVEEWNAL+LN LCP Sbjct: 184 TSVHVRMTSAADDQHWLRRALRDYNETRASDVVVVNFGAHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPAENGTYEAF--VELDLGNTACCTGTPVKVLDRNAWVEDYLRENGLSDRVKLLRIYDMSVSRGAAHHTCHLAPPSTMDQTGAESGNCHSSYATDCRHWSETGVVEEWNALLLNQLCP 379
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D8LML8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML8_ECTSI) HSP 1 Score: 251 bits (641), Expect = 1.800e-77 Identity = 119/190 (62.63%), Postives = 141/190 (74.21%), Query Frame = 1 Query: 640 SFAFGNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQGTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 S A +W RA++D+NETRASDV VVNFGAHY TP+G+ +FK V ILD+MAEIG+TATVVWREIAP HFP+ N ++E F +E + ACCTGTP + RN WVEDYL + GL+D VKLLRIY+MS+PRG+AHHTCH+A PSTMDQ C DCRHWS TGVVEEWNAL+LN LCP Sbjct: 3 SAADDQHWLRRALRDYNETRASDVVVVNFGAHYRSTPEGEESFKRDVSSILDDMAEIGETATVVWREIAPTHFPAENGTYEAF--VELDLGNTACCTGTPVKFLDRNAWVEDYLRENGLSDRVKLLRIYDMSVPRGAAHHTCHLAPPSTMDQTGAESGNCHSSYATDCRHWSETGVVEEWNALLLNQLCP 190
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7FKZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ2_ECTSI) HSP 1 Score: 238 bits (607), Expect = 2.570e-72 Identity = 110/194 (56.70%), Postives = 137/194 (70.62%), Query Frame = 1 Query: 652 GNNWFSRAVQDFNETRASDVFVVNFGAHYPETPKGDRAFKNAVFPILDEMAEIGKTATVVWREIAPVHFPSVNASWETFNALEPEQKRGACCTGTPPRVYARNKWVEDYLVDKGLTDSVKLLRIYEMSIPRGSAHHTCHMARPSTMDQ--------GTTSKPVCVMHAQMDCRHWSATGVVEEWNALMLNHLCP 1209 G +W +A DFNETRASDVFVVNFG HY + P+ D FK + P+L +MA +G+ ATV+WREIAP HFP+ N S++++ L+ + C TGTPP+V+ RN+WVE+Y+ D GL D +KLLRIY+MS+PRG+AHHTCH A PSTM Q G S P+ DCRHWS TGVVEEWN LMLNHLCP Sbjct: 9 GEHWLLKAASDFNETRASDVFVVNFGGHYHDIPEDDEEFKTDMIPVLQDMAVLGQNATVIWREIAPTHFPAANGSYDSYADLDAKDLTPRC-TGTPPKVFDRNEWVENYVRDNGLEDRIKLLRIYDMSVPRGAAHHTCHFAPPSTMKQPRMRNDGRGAASGPI-------DCRHWSETGVVEEWNTLMLNHLCP 194
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Match: D7FKZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ3_ECTSI) HSP 1 Score: 144 bits (362), Expect = 1.400e-36 Identity = 69/117 (58.97%), Postives = 86/117 (73.50%), Query Frame = 1 Query: 25 LGSWAGQASGWEDCTISPDDEWRRATERTP--ALRMRYEFPRRYTCEMEIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVFMGDSLSIQQADSLVGMLDWHPYWIVSTNPRN 369 LG G+ASGW++C++SP+D W A RT ALRMR+++ RRYTC+ + ASY AASYFFDS CT F FP + SCL+GRRV+F+GDSLS QQ DSL+GML WHP W+ PRN Sbjct: 47 LGVVVGKASGWKECSVSPEDRWSPAPSRTSTAALRMRFDYERRYTCDSKHASYLAASYFFDSPCTARRFPFPPDVTSCLKGRRVIFLGDSLSNQQGDSLMGMLGWHPDWMTKGAPRN 163 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5830.14275.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5830.14275.1 >prot_L-elsbetiae_contig5830.14275.1 ID=prot_L-elsbetiae_contig5830.14275.1|Name=mRNA_L-elsbetiae_contig5830.14275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=365bp MRYEFPRRYTCEMEIASYEAASYFFDSRCTGDGFFFPERILSCLEGRRVVback to top mRNA from alignment at L-elsbetiae_contig5830:44..8945- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5830.14275.1 ID=mRNA_L-elsbetiae_contig5830.14275.1|Name=mRNA_L-elsbetiae_contig5830.14275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8902bp|location=Sequence derived from alignment at L-elsbetiae_contig5830:44..8945- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5830:44..8945- >mRNA_L-elsbetiae_contig5830.14275.1 ID=mRNA_L-elsbetiae_contig5830.14275.1|Name=mRNA_L-elsbetiae_contig5830.14275.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2190bp|location=Sequence derived from alignment at L-elsbetiae_contig5830:44..8945- (Laminarionema elsbetiae ELsaHSoW15)back to top |