mRNA_L-elsbetiae_contig582.14258.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig582.14258.1 vs. uniprot
Match: A0A6H5J6J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6J4_9PHAE) HSP 1 Score: 416 bits (1069), Expect = 1.260e-138 Identity = 226/319 (70.85%), Postives = 266/319 (83.39%), Query Frame = 1 Query: 100 RRTRPTTALWGAATLL----AGT-RLASGATILITSPDSSSAYRAGDAVPVEWDYEGTGENFSINLLKGGEQLDNGDLCAAEENGVCFDLTQDQMVLLPDTGLESGTDYTIHVKDQSSDAEHESPAFTILGTPDANVEVTTPNGFTSLNQGGEVSVSWLYVGANQLFDIYVRQNGKRVSDNLCAGQSEGSCKSTGPVASATVTLPVELENSGDYRLLVVDKVDDDAWGLSAELPVGVAASSTEGSDSESSSASKLGLVIGLAAGGVCLLAALLACLRKRNKDHRREQKMATLDMLNKRRPAPSVSLAVEGMAEPNSPDQ 1041 +RT P TA AA AGT RLA GAT+ I+SP S+S+Y AGDAVPV+W YEGTGENF+I+LLKG E++ DLC+AEENGVCFDLTQDQ V+LPDTGLESG+DYT+ V+DQSSD E S FTI+GT +NVE+T+P+G+T+LN GG VSVSWLYVG N FDIY+RQNG+RVS NLCA Q GSC +T PVASAT+TLP E+EN+ DYRLLVVDKV+DDAWGLS ELPVGVAA+S + + S+SS+A+KL LVIGL+AGGVCLLA LLA LR RNK+ RRE+K+ATLDMLNKRRPAPSVSLAVEGMAEP+SPDQ Sbjct: 3 KRTPPPTAFGRAAVATFVAAAGTARLALGATLDISSPASTSSYHAGDAVPVQWIYEGTGENFAIHLLKGDEEV--ADLCSAEENGVCFDLTQDQTVILPDTGLESGSDYTVRVRDQSSDLEDTSETFTIIGTSTSNVEITSPDGYTTLNAGGVVSVSWLYVGENMEFDIYLRQNGERVSSNLCADQEGGSCTATIPVASATITLPEEIENAADYRLLVVDKVNDDAWGLSVELPVGVAAASVD-TGSDSSAATKLALVIGLSAGGVCLLAVLLAGLRTRNKNRRREEKLATLDMLNKRRPAPSVSLAVEGMAEPDSPDQ 318
BLAST of mRNA_L-elsbetiae_contig582.14258.1 vs. uniprot
Match: D7G260_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G260_ECTSI) HSP 1 Score: 413 bits (1062), Expect = 1.020e-137 Identity = 225/336 (66.96%), Postives = 272/336 (80.95%), Query Frame = 1 Query: 88 MTTMRRTRPTTALW--GAATLLAGT---RLASGATILITSPDSSSAYRAGDAVPVEWDYEGTGENFSINLLKGGEQLDNGDLCAAEENGVCFDLTQDQMVLLPDTGLESGTDYTIHVKDQSSDAEHESPAFTILGTPDANVEVTTPNGFTSLNQGGEVSVSWLYVGANQLFDIYVRQNGKRVSDNLCAGQSEGSCKSTGPVASATVTLPVELENSGDYRLLVVDKVDDDAWGLSAELPVGVAASSTEGSDSESSSASKLGLVIGLAAGGVCLLAALLACLRKRNKDHRREQKMATLDMLNKRRPAPSVSLAVEGMAEPNSPDQVSVAVIHYLAGFV 1080 M +RTRP TA AA +AG R+A GAT+ I+SP S+S+Y AGDAVPVEW YEGTGENF+I+LLKG E++ DLC AEENGVCFDLTQ+Q V+LPDT LESG+DYT+ V+DQSSD E S FTI+GT +NVE+T+P+G+T+LN GG++SVSWLYVG N FDIY+RQ+G+RVS+NLCA Q GSC +T PVASAT+TLP E+EN DYRLLVVDKV+DDAWGLS ELPVGVAA+S + + S+SS+A+KL LVIGL+AGGVCLLA LLA R +NK+ RRE+K+ATLDMLNKRRPAPSVSLAVEGMAEP+SPDQ S V +L F+ Sbjct: 1 MVITKRTRPPTAFGRAAAAIFVAGASTARVALGATLDISSPASTSSYHAGDAVPVEWIYEGTGENFAIHLLKGDEEV--ADLCFAEENGVCFDLTQEQTVILPDTDLESGSDYTVRVRDQSSDLEDTSETFTIIGTSTSNVEITSPDGYTTLNAGGDLSVSWLYVGENTEFDIYLRQDGERVSNNLCADQEGGSCTATIPVASATITLPEEIENGADYRLLVVDKVNDDAWGLSVELPVGVAAASVD-TGSDSSAATKLALVIGLSAGGVCLLAVLLAGFRTKNKNRRREEKLATLDMLNKRRPAPSVSLAVEGMAEPDSPDQTSGGVSGWLGRFM 333 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig582.14258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig582.14258.1 >prot_L-elsbetiae_contig582.14258.1 ID=prot_L-elsbetiae_contig582.14258.1|Name=mRNA_L-elsbetiae_contig582.14258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=358bp MTTMRRTRPTTALWGAATLLAGTRLASGATILITSPDSSSAYRAGDAVPVback to top mRNA from alignment at L-elsbetiae_contig582:28521..33038+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig582.14258.1 ID=mRNA_L-elsbetiae_contig582.14258.1|Name=mRNA_L-elsbetiae_contig582.14258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4518bp|location=Sequence derived from alignment at L-elsbetiae_contig582:28521..33038+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig582:28521..33038+ >mRNA_L-elsbetiae_contig582.14258.1 ID=mRNA_L-elsbetiae_contig582.14258.1|Name=mRNA_L-elsbetiae_contig582.14258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2148bp|location=Sequence derived from alignment at L-elsbetiae_contig582:28521..33038+ (Laminarionema elsbetiae ELsaHSoW15)back to top |