mRNA_L-elsbetiae_contig580.14229.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig580.14229.1
Unique NamemRNA_L-elsbetiae_contig580.14229.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig580.14229.1 vs. uniprot
Match: D7FW37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW37_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 2.070e-20
Identity = 55/97 (56.70%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    1 LSQTGAGPMVCNPRRRGGINYAADSAEARWAAEAAAEACRQETA--KADRREAEVGAEMLRMMKMWSFKEGQGAPAVAGGANGHGEANAGQQAVAAQ 285
            + Q G  P+  NPRRRGGINYAADSAEA+WAA AAA+ CR++T    +  +EAEVGAEMLRMMKMWSF             NG  EA+AGQ+A   Q
Sbjct:    6 MQQFGEAPVFVNPRRRGGINYAADSAEAKWAAGAAAQPCREDTRGRMSVDQEAEVGAEMLRMMKMWSF-------------NGGAEAHAGQEAPVGQ 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig580.14229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW37_ECTSI2.070e-2056.70Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig580contigL-elsbetiae_contig580:5110..6154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003230.1
Exons2
Model size479
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig580.14229.1prot_L-elsbetiae_contig580.14229.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig580 5134..5969 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816623.0809104-UTR-L-elsbetiae_contig580:5109..51331622816623.0809104-UTR-L-elsbetiae_contig580:5109..5133Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig580 5110..5133 +
1691683692.3306322-UTR-L-elsbetiae_contig580:5109..51331691683692.3306322-UTR-L-elsbetiae_contig580:5109..5133Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig580 5110..5133 +
1622816623.1167758-UTR-L-elsbetiae_contig580:5969..61541622816623.1167758-UTR-L-elsbetiae_contig580:5969..6154Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig580 5970..6154 +
1691683692.3746886-UTR-L-elsbetiae_contig580:5969..61541691683692.3746886-UTR-L-elsbetiae_contig580:5969..6154Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig580 5970..6154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816623.0941179-CDS-L-elsbetiae_contig580:5133..52631622816623.0941179-CDS-L-elsbetiae_contig580:5133..5263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig580 5134..5263 +
1691683692.3450117-CDS-L-elsbetiae_contig580:5133..52631691683692.3450117-CDS-L-elsbetiae_contig580:5133..5263Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig580 5134..5263 +
1622816623.1051493-CDS-L-elsbetiae_contig580:5829..59691622816623.1051493-CDS-L-elsbetiae_contig580:5829..5969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig580 5830..5969 +
1691683692.355527-CDS-L-elsbetiae_contig580:5829..59691691683692.355527-CDS-L-elsbetiae_contig580:5829..5969Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig580 5830..5969 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig580.14229.1

>prot_L-elsbetiae_contig580.14229.1 ID=prot_L-elsbetiae_contig580.14229.1|Name=mRNA_L-elsbetiae_contig580.14229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MVCNPRRRGGINYAADSAEARWAAEAAAEACRQETAKADRREAEVGAEML
RMMKMWSFKEGQGAPAVAGGANGHGEANAGQQAVAAQLH*
back to top

mRNA from alignment at L-elsbetiae_contig580:5110..6154+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig580.14229.1 ID=mRNA_L-elsbetiae_contig580.14229.1|Name=mRNA_L-elsbetiae_contig580.14229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1045bp|location=Sequence derived from alignment at L-elsbetiae_contig580:5110..6154+ (Laminarionema elsbetiae ELsaHSoW15)
TTGTCACAGACTGGCGCGGGACCTATGGTTTGCAACCCTCGACGAAGGGG
GGGGATAAACTACGCGGCAGACTCAGCAGAGGCTAGGTGGGCGGCCGAGG
CGGCGGCTGAGGCATGCCGGCAAGAGACAGCAAAGGCCGACCGCCGAGAA
GCAGGTCAGTCGAAATGGTCAAGTACACCACCAACGGATCGAACGGGATC
CAGGAAGAGAGAGTGACCGCCGCGTACATAGTGAAAATGTGGCCGCCCCC
ACCAAACCTGCTTATACCCCTCGCCTCAATCATCCGCGCCTACTACCACG
CCACAACCAACGTAGAGCCGGAGAAGTACACACGAAACGCCGCGAATGGC
CGTCTCCTCTTTGGGGGTTGTTGTTGTTGTTGCTGCCCAGACTACGTAAC
AAAAAAATCTCCCCTAACTCGATTATTTTGGTGGGTGCTACATACAACAG
CGTAGCCCCGACAGCAGTCAGCTACATTTCATGTAACACAGCTTGTAGTC
CGAACTAATTCAATGACGATACTGTTTCAAACGAAGTTACGATAATGTTT
CAAACGAAGTTGGAGACGAGAGATCTGTAGGCGAATAACAGAGTGCCGTT
GTTTTCCTAGACGTGACTCATGCACACCCTTCCCCGAAAGCTTAGATCGC
ATGTGAGATCTCTAACCCAGGTGCACCCACTCCTCATATTCGGCCGTTGT
TTCGCCTTTTCATTACGCAGAGGTAGGCGCAGAAATGCTGCGAATGATGA
AAATGTGGTCGTTCAAGGAGGGTCAGGGGGCCCCAGCGGTTGCTGGAGGT
GCTAACGGACACGGCGAAGCAAACGCTGGCCAACAAGCGGTTGCGGCCCA
GTTACATTGAGCTTCAAATTCGAGGCGTTTTACAACTTTGGCCGAGCGAG
AACTAGGCTTGGCAAGAGGTAGTTCTGGACGGGTTTTCATGGGAGTTGGG
AGAGATCATGTCATAATAAGGTTTTTATATCATTCTTGGGTGGTTCTGTA
AATATCAACAATCGGTGGCAACGCCACTTGGATTTCCCCTCTAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig580:5110..6154+

>mRNA_L-elsbetiae_contig580.14229.1 ID=mRNA_L-elsbetiae_contig580.14229.1|Name=mRNA_L-elsbetiae_contig580.14229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig580:5110..6154+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTTTGCAACCCTCGACGAAGGGGGGGGATAAACTACGCGGCAGACTC
AGCAGAGGCTAGGTGGGCGGCCGAGGCGGCGGCTGAGGCATGCCGGCAAG
AGACAGCAAAGGCCGACCGCCGAGAAGCAGATGGTTTGCAACCCTCGACG
AAGGGGGGGGATAAACTACGCGGCAGACTCAGCAGAGGCTAGGTGGGCGG
CCGAGGCGGCGGCTGAGGCATGCCGGCAAGAGACAGCAAAGGCCGACCGC
CGAGAAGCAGAGGTAGGCGCAGAAATGCTGCGAATGATGAAAATGTGGTC
GTTCAAGGAGGGTCAGGGGGCCCCAGCGGTTGCTGGAGGTGCTAACGGAC
ACGGCGAAGCAAACGCTGGCCAACAAGCGGTTGCGGCCCAGTTACATTGA
AGGTAGGCGCAGAAATGCTGCGAATGATGAAAATGTGGTCGTTCAAGGAG
GGTCAGGGGGCCCCAGCGGTTGCTGGAGGTGCTAACGGACACGGCGAAGC
AAACGCTGGCCAACAAGCGGTTGCGGCCCAGTTACATTGA
back to top