Homology
BLAST of mRNA_L-elsbetiae_contig5796.14218.1 vs. uniprot
Match: A0A6H5JGQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ9_9PHAE) HSP 1 Score: 121 bits (304), Expect = 6.880e-30 Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 1 Query: 64 MAGGMGFGGSMLGEVLVSYSTSSLPPAKRHSITATSAHLEQLAAEAGIDMDADEINIEDLRMSRAEDESGYKLGG 288
MAGGMGF GSMLGEVLVSYS SSLPPAKRHSI+ATSAH EQLAAEAGID+DADEI++EDLRM R EDESGY LGG
Sbjct: 48 MAGGMGFEGSMLGEVLVSYSMSSLPPAKRHSISATSAHFEQLAAEAGIDLDADEIHMEDLRMYRIEDESGYALGG 122
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 1 |
Model size | 320 |
Cds size | 318 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816622.0738792-CDS-L-elsbetiae_contig5796:6840..7158 | 1622816622.0738792-CDS-L-elsbetiae_contig5796:6840..7158 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5796 6841..7158 + |
1691683691.591945-CDS-L-elsbetiae_contig5796:6840..7158 | 1691683691.591945-CDS-L-elsbetiae_contig5796:6840..7158 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig5796 6841..7158 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5796.14218.1 >prot_L-elsbetiae_contig5796.14218.1 ID=prot_L-elsbetiae_contig5796.14218.1|Name=mRNA_L-elsbetiae_contig5796.14218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
QICPAKIAPSSCETAISGGGGMAGGMGFGGSMLGEVLVSYSTSSLPPAKR HSITATSAHLEQLAAEAGIDMDADEINIEDLRMSRAEDESGYKLGGDNDE EDEDDG back to topmRNA from alignment at L-elsbetiae_contig5796:6841..7158+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig5796.14218.1 ID=mRNA_L-elsbetiae_contig5796.14218.1|Name=mRNA_L-elsbetiae_contig5796.14218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=318bp|location=Sequence derived from alignment at L-elsbetiae_contig5796:6841..7158+ (Laminarionema elsbetiae ELsaHSoW15) CAGATTTGCCCTGCGAAAATTGCACCATCGTCTTGCGAGACTGCTATCAG
CGGTGGCGGTGGCATGGCAGGCGGAATGGGTTTCGGGGGAAGTATGCTGG
GAGAGGTCTTGGTGTCATACTCGACGAGCTCGTTGCCACCAGCGAAGAGG
CACTCTATCACCGCCACTTCCGCCCACCTCGAGCAACTGGCGGCGGAGGC
TGGGATCGACATGGATGCCGACGAGATAAACATCGAAGATCTTCGTATGA
GCCGCGCGGAGGACGAATCTGGGTACAAACTTGGCGGAGACAACGACGAA
GAAGACGAAGACGACGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig5796:6841..7158+ >mRNA_L-elsbetiae_contig5796.14218.1 ID=mRNA_L-elsbetiae_contig5796.14218.1|Name=mRNA_L-elsbetiae_contig5796.14218.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig5796:6841..7158+ (Laminarionema elsbetiae ELsaHSoW15) CAGATTTGCCCTGCGAAAATTGCACCATCGTCTTGCGAGACTGCTATCAG CGGTGGCGGTGGCATGGCAGGCGGAATGGGTTTCGGGGGAAGTATGCTGG GAGAGGTCTTGGTGTCATACTCGACGAGCTCGTTGCCACCAGCGAAGAGG CACTCTATCACCGCCACTTCCGCCCACCTCGAGCAACTGGCGGCGGAGGC TGGGATCGACATGGATGCCGACGAGATAAACATCGAAGATCTTCGTATGA GCCGCGCGGAGGACGAATCTGGGTACAAACTTGGCGGAGACAACGACGAA GAAGACGAAGACGACGGCCAGATTTGCCCTGCGAAAATTGCACCATCGTC TTGCGAGACTGCTATCAGCGGTGGCGGTGGCATGGCAGGCGGAATGGGTT TCGGGGGAAGTATGCTGGGAGAGGTCTTGGTGTCATACTCGACGAGCTCG TTGCCACCAGCGAAGAGGCACTCTATCACCGCCACTTCCGCCCACCTCGA GCAACTGGCGGCGGAGGCTGGGATCGACATGGATGCCGACGAGATAAACA TCGAAGATCTTCGTATGAGCCGCGCGGAGGACGAATCTGGGTACAAACTT GGCGGAGACAACGACGAAGAAGACGAAGACGACGGC back to top
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