Homology
BLAST of mRNA_L-elsbetiae_contig5779.14190.1 vs. uniprot
Match:
D7FXG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXG3_ECTSI)
HSP 1 Score: 102 bits (255), Expect = 1.320e-24
Identity = 69/114 (60.53%), Postives = 78/114 (68.42%), Query Frame = 1
Query: 184 ASSIFNSNVSGHSSYSGFSAMSSIHAGFGGSELGSVGEGNSAXXXXXXGTGPAS-----AAWRTPPLGAQKGDPMGGGEDGATPPAHGSTGGALGWGSIMGSGATSGAGVGDGP 510
+S+IF SNVSGHSSYSGFSAMSS+HA FGGSELG+ G G A WRTPPLG+QKGDP G++ PPAHGSTGGALGWGSIMGSG + G G+GP
Sbjct: 56 SSTIFGSNVSGHSSYSGFSAMSSMHA-FGGSELGNSSGGGGMAGVNAAADGXXXXNNNPATWRTPPLGSQKGDP---GDESGNPPAHGSTGGALGWGSIMGSGGAT-RGTGEGP 164
BLAST of mRNA_L-elsbetiae_contig5779.14190.1 vs. uniprot
Match:
A0A6H5L3L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3L2_9PHAE)
HSP 1 Score: 108 bits (270), Expect = 3.150e-24
Identity = 73/118 (61.86%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 181 DASSIFNSNVSGHSSYSGFSAMSSIHAGFGGSELGSVGEGNSAXXXXXXGTGPAS--------AAWRTPPLGAQKGDPMGGGEDGATPPAHGSTGGALGWGSIMGSGATSGAGVGDGP 510
D+S+IF SNVSGHSSYSGFSAMSS+HA FGGSELG NS+ G PA A WRTPPLG+QKGDP G++ PPAHGSTGGALGWGSIMGSG + G G+GP
Sbjct: 1615 DSSTIFGSNVSGHSSYSGFSAMSSMHA-FGGSELG-----NSSSGGMAGGNAPADGSSSGNNLATWRTPPLGSQKGDP---GDESGNPPAHGSTGGALGWGSIMGSGGAT-RGTGEGP 1722
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5779.14190.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.32e-24 / Id = 60.53 Expect = 3.15e-24 / Id = 61.86 Sequence D7FXG3_ECTSI A0A6H5L3L2_9PHAE
Match Name E-value Identity Description
D7FXG3_ECTSI 1.320e-24 60.53 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3L2_9PHAE 3.150e-24 61.86 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Ec32 ortholog description hypothetical protein
Ec32 ortholog Ec-07_003120.1
Exons 2
Model size 516
Cds size 516
Stop 1
Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816619.3902762-CDS-L-elsbetiae_contig5779:1817..1921 1622816619.3902762-CDS-L-elsbetiae_contig5779:1817..1921 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5779 1818..1921 +
1691683689.4834309-CDS-L-elsbetiae_contig5779:1817..1921 1691683689.4834309-CDS-L-elsbetiae_contig5779:1817..1921 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5779 1818..1921 +
1622816619.4064736-CDS-L-elsbetiae_contig5779:2017..2429 1622816619.4064736-CDS-L-elsbetiae_contig5779:2017..2429 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5779 2018..2429 +
1691683689.496885-CDS-L-elsbetiae_contig5779:2017..2429 1691683689.496885-CDS-L-elsbetiae_contig5779:2017..2429 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig5779 2018..2429 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5779.14190.1
>prot_L-elsbetiae_contig5779.14190.1 ID=prot_L-elsbetiae_contig5779.14190.1|Name=mRNA_L-elsbetiae_contig5779.14190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=172bp
MRQRHEQQVYGSRRSSSPGGASSRSRGGGAADGGAGGGGGGGGGGGGGGG GVSSLGNNHGDASSIFNSNVSGHSSYSGFSAMSSIHAGFGGSELGSVGEG NSAAAAAAAGTGPASAAWRTPPLGAQKGDPMGGGEDGATPPAHGSTGGAL GWGSIMGSGATSGAGVGDGPG* back to top mRNA from alignment at L-elsbetiae_contig5779:1818..2429+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5779.14190.1 ID=mRNA_L-elsbetiae_contig5779.14190.1|Name=mRNA_L-elsbetiae_contig5779.14190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig5779:1818..2429+ (Laminarionema elsbetiae ELsaHSoW15)ATGCGCCAGCGGCACGAGCAGCAGGTCTACGGCAGCCGCCGGTCGTCGTC
CCCGGGGGGCGCTTCTTCTCGGAGTCGCGGGGGGGGGGCTGCAGACGGAG
GCGC GTACAGCAGCGGAGGGAGCCCTCTCCCGGTGGGCCCGTCGTTGCGG
AGCCCCCCGTCGATACTGCCGGGGGGGCACACGTTCTCGTCGGCGGGCAG
CGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGAG
TGTCGTCCCTGGGCAACAACCACGGCGACGCGTCGTCCATCTTCAACTCG
AACGTGTCGGGGCACTCGAGCTACTCAGGGTTCTCAGCGATGTCGTCCAT
CCACGCCGGGTTCGGAGGGAGCGAGCTCGGTAGCGTCGGGGAAGGCAACA
GCGCCGCCGCCGCCGCCGCCGCCGGCACTGGTCCCGCCTCGGCGGCGTGG
CGAACACCACCGCTGGGGGCACAGAAGGGGGACCCGATGGGGGGTGGCGA
GGATGGCGCAACCCCCCCGGCGCACGGATCTACCGGGGGCGCGTTAGGCT
GGGGCAGTATCATGGGCAGCGGTGCGACCAGCGGGGCCGGGGTGGGAGAT
GGCCCGGGCTGA back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5779:1818..2429+
>mRNA_L-elsbetiae_contig5779.14190.1 ID=mRNA_L-elsbetiae_contig5779.14190.1|Name=mRNA_L-elsbetiae_contig5779.14190.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig5779:1818..2429+ (Laminarionema elsbetiae ELsaHSoW15) ATGCGCCAGCGGCACGAGCAGCAGGTCTACGGCAGCCGCCGGTCGTCGTC CCCGGGGGGCGCTTCTTCTCGGAGTCGCGGGGGGGGGGCTGCAGACGGAG GCGCATGCGCCAGCGGCACGAGCAGCAGGTCTACGGCAGCCGCCGGTCGT CGTCCCCGGGGGGCGCTTCTTCTCGGAGTCGCGGGGGGGGGGCTGCAGAC GGAGGCGCCGGCGGCGGCGGTGGCGGCGGCGGCGGTGGCGGCGGCGGCGG TGGCGGAGTGTCGTCCCTGGGCAACAACCACGGCGACGCGTCGTCCATCT TCAACTCGAACGTGTCGGGGCACTCGAGCTACTCAGGGTTCTCAGCGATG TCGTCCATCCACGCCGGGTTCGGAGGGAGCGAGCTCGGTAGCGTCGGGGA AGGCAACAGCGCCGCCGCCGCCGCCGCCGCCGGCACTGGTCCCGCCTCGG CGGCGTGGCGAACACCACCGCTGGGGGCACAGAAGGGGGACCCGATGGGG GGTGGCGAGGATGGCGCAACCCCCCCGGCGCACGGATCTACCGGGGGCGC GTTAGGCTGGGGCAGTATCATGGGCAGCGGTGCGACCAGCGGGGCCGGGG TGGGAGATGGCCCGGGCTGACGGCGGCGGCGGTGGCGGCGGCGGCGGTGG CGGCGGCGGCGGTGGCGGAGTGTCGTCCCTGGGCAACAACCACGGCGACG CGTCGTCCATCTTCAACTCGAACGTGTCGGGGCACTCGAGCTACTCAGGG TTCTCAGCGATGTCGTCCATCCACGCCGGGTTCGGAGGGAGCGAGCTCGG TAGCGTCGGGGAAGGCAACAGCGCCGCCGCCGCCGCCGCCGCCGGCACTG GTCCCGCCTCGGCGGCGTGGCGAACACCACCGCTGGGGGCACAGAAGGGG GACCCGATGGGGGGTGGCGAGGATGGCGCAACCCCCCCGGCGCACGGATC TACCGGGGGCGCGTTAGGCTGGGGCAGTATCATGGGCAGCGGTGCGACCA GCGGGGCCGGGGTGGGAGATGGCCCGGGCTGA back to top