mRNA_L-elsbetiae_contig101.140.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig101.140.1
Unique NamemRNA_L-elsbetiae_contig101.140.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig101.140.1 vs. uniprot
Match: B5LWE1_9PHYC (Putative exonuclease n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWE1_9PHYC)

HSP 1 Score: 219 bits (559), Expect = 2.030e-69
Identity = 110/190 (57.89%), Postives = 145/190 (76.32%), Query Frame = 1
Query:   31 HPNVQRLLTY-NIAQRTPEWYEYRSKRVTASEVSVVLAQGRGAETLMLKKKCGSNYTSFSTEYTRIGTENEGNIVEIYKQMYPSVDVYHNLSVVPHKTEKHLAASLDACTNTGINVEIKTCFKSS-FTKVPKAYRDQVQLQMAVADLEHTHLVYQYINMPGAPVIVHEIPRSRQWFQDNNSIMRKFVQDL 594
            HP+V  +L+   I QRTPEW+ +R   VTASEVS V+AQG+GA +L+ +KK  +  ++FSTE+T  G+ NEG +VE Y++++P V V+H+LS+  H+    +AASLDACTNTGINVEIKT FK    T +PK+YRDQVQLQM VADL+ THLVYQYIN+PG PV+VH+IPR R WFQ + +I+R FV +L
Sbjct:    5 HPSVLSILSGPRIEQRTPEWFAFRRSHVTASEVSTVIAQGKGARSLLHRKKFQAVSSNFSTEFTDRGSANEGTVVEKYRELFPGVVVHHDLSITRHRDLDFVAASLDACTNTGINVEIKTSFKPRPVTTIPKSYRDQVQLQMEVADLDLTHLVYQYINIPGQPVVVHQIPRDRDWFQKHVAILRDFVHEL 194          
BLAST of mRNA_L-elsbetiae_contig101.140.1 vs. uniprot
Match: Q8QNK7_ESV1K (EsV-1-64 n=2 Tax=root TaxID=1 RepID=Q8QNK7_ESV1K)

HSP 1 Score: 214 bits (544), Expect = 3.160e-67
Identity = 104/196 (53.06%), Postives = 140/196 (71.43%), Query Frame = 1
Query:   28 VHPNVQRLLTY-NIAQRTPEWYEYRSKRVTASEVSVVLAQGRGAETLMLKKKCGSNYTSFSTEYTRIGTENEGNIVEIYKQMYPSVDVYHNLSVVPHKTEKHLAASLDACTNTGINVEIKTCFKSSFTKVPKAYRDQVQLQMAVADLEHTHLVYQYINMPGAPVIVHEIPRSRQWFQDNNSIMRKFVQDLEHYSPF 612
            +H +++R+L Y  IAQRTPEWYEYR KRVTASE S ++AQG+G + +  ++K G   ++ S+EY  IGT+NE  +V +Y++ +P  +V+H+LS++PH T   +AASLDACT +GINVEIKT FK    KV K Y DQVQLQM V+DLE THLV  YI MP  P++VHEI R R WF+ N  I + FV+ +  + PF
Sbjct:    1 MHSSIKRILDYPRIAQRTPEWYEYRKKRVTASEASTIIAQGKGYDRIF-EQKVGIRDSNISSEYMTIGTDNEEAVVALYREKFPEEEVFHDLSIIPHPTLDFVAASLDACTASGINVEIKTVFKEKVIKVSKMYYDQVQLQMEVSDLEKTHLVQHYIRMPNQPIVVHEIFRDRGWFERNRGIFKGFVEKVRDFFPF 195          
BLAST of mRNA_L-elsbetiae_contig101.140.1 vs. uniprot
Match: Q6XLZ3_9PHYC (FirrV-1-B43 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLZ3_9PHYC)

HSP 1 Score: 205 bits (521), Expect = 4.120e-63
Identity = 108/196 (55.10%), Postives = 139/196 (70.92%), Query Frame = 1
Query:   31 HPNVQRLLTY-NIAQRTPEWYEYRSKRVTASEVSVVLAQGRGAETLMLKKKCGS-NYTSFSTEYTRIGTENEGNIVEIYKQMYPSVDVYHNLSVVPHKTEKHLAASLDACTNTGINVEIKTCFKSS-FTKVPKAYRDQVQLQMAVADLEHTHLVYQYINMPGAPVIVHEIPRSRQWFQDNNSIMRKFVQDLEHYSP 609
            HP+V  +L    I QR+PEW+ +R   VTASE S+V+AQG+G  TLM +KK  + N +SFS E+T+IG ENE  IVE Y+ MYP V V+  L ++ H+    LAASLDACTNTGINVE+KT FK++    +PKAY DQVQLQM VA+L+ THLVYQYIN+P  PVIVHE+ R+  WF ++    R FV++L   SP
Sbjct:    6 HPSVLLILASPQIIQRSPEWFAFRKAHVTASEASIVIAQGKGLRTLMNRKKYQAVNGSSFSNEFTKIGAENESKIVEKYRLMYPDVIVHDQLPIIKHQRFDFLAASLDACTNTGINVEMKTSFKTTRIHSIPKAYYDQVQLQMEVANLDMTHLVYQYINLPDQPVIVHEVHRNTDWFSEHLHKFRIFVEELRAMSP 201          
BLAST of mRNA_L-elsbetiae_contig101.140.1 vs. uniprot
Match: UPI000404B382 (YqaJ viral recombinase family protein n=2 Tax=Methylobacter TaxID=429 RepID=UPI000404B382)

HSP 1 Score: 55.1 bits (131), Expect = 1.600e-5
Identity = 55/199 (27.64%), Postives = 90/199 (45.23%), Query Frame = 1
Query:   61 NIAQRTPEWYEYRSKRVTASEVSVVLAQ--GRGAETLMLKKKCGSNYTSFSTE-YTRIGTENEGNIVEIYKQMYPSVDVYHNLSVVPHKTEKH----LAASLDACTNTGINVEIKTCFKSSF---------TKVPKAYRDQVQLQMAVADLEHTHLVYQYINMPGAPVIVHEIPRSRQWFQDNNSIMRKFVQDLEHYSP 609
            N  QRTPEW+E+R+  V+ASE  VVL +   R    L  +KK  +   + +   + + G       + +      S +  HN  ++P   E      L AS D   + GI VE+K   +++F         +K+ + Y  QVQ Q+AVA+ +  +L   + +      +   IPR  Q  Q+     R FV+ ++   P
Sbjct:    5 NFPQRTPEWHEWRTSGVSASEAIVVLGKCSARTIYRLYTEKKGITLLDNLANNPFVQRG-------IRLESTARSSFERRHNTLLLPICAESEEFPFLRASFDGLDDDGIPVELKVPMEANFRDAQQNGVNSKIYQRYYYQVQQQIAVAETDRGYLSLYWNDKEQFDFL---IPRDDQVIQELIFKARDFVERMKKNQP 193          
BLAST of mRNA_L-elsbetiae_contig101.140.1 vs. uniprot
Match: A0A6C0L1Y1_9ZZZZ (YqaJ domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0L1Y1_9ZZZZ)

HSP 1 Score: 54.3 bits (129), Expect = 3.160e-5
Identity = 48/143 (33.57%), Postives = 73/143 (51.05%), Query Frame = 1
Query:   70 QRTPEWYEYRSKRVTASEVSVVL--AQGRGAETLMLKKKCGSNYTSFSTEYTRIGTENEGNIVEIYKQMYPSVDVYHNLSVVPHKTEKHLAASLDA-CTNTGIN------VEIKTCFKSSFTK-VPKAYRDQVQLQMAVADLE 468
            QR+PEWYE R +++TAS +   +     +  E L+L K   + Y       T  G + E   ++ Y+++  +V +  +  +VPH + +   AS D  C +TG +      VEIK   K  FTK VP  Y  QVQ Q+ V DL+
Sbjct:   78 QRSPEWYEMRKEKLTASSLGTAIDKCHFQSREELLLSKIEDTPY--LPNPITEWGVKYEDVAIQFYEELN-NVKIL-DFGLVPHPSFEAFGASPDGICDDTGNDPFVARMVEIKCPPKRKFTKSVPHHYWMQVQGQLEVCDLD 216          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig101.140.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
B5LWE1_9PHYC2.030e-6957.89Putative exonuclease n=1 Tax=Feldmannia species vi... [more]
Q8QNK7_ESV1K3.160e-6753.06EsV-1-64 n=2 Tax=root TaxID=1 RepID=Q8QNK7_ESV1K[more]
Q6XLZ3_9PHYC4.120e-6355.10FirrV-1-B43 n=1 Tax=Feldmannia irregularis virus a... [more]
UPI000404B3821.600e-527.64YqaJ viral recombinase family protein n=2 Tax=Meth... [more]
A0A6C0L1Y1_9ZZZZ3.160e-533.57YqaJ domain-containing protein n=1 Tax=viral metag... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig101contigL-elsbetiae_contig101:21989..22600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-64 nuclease
Ec32 orthologEc-06_006150.1
Exons1
Model size612
Cds size612
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815241.388764-CDS-L-elsbetiae_contig101:21988..226001622815241.388764-CDS-L-elsbetiae_contig101:21988..22600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 21989..22600 +
1691682790.7403693-CDS-L-elsbetiae_contig101:21988..226001691682790.7403693-CDS-L-elsbetiae_contig101:21988..22600Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig101 21989..22600 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig101.140.1prot_L-elsbetiae_contig101.140.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig101 21989..22600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig101.140.1

>prot_L-elsbetiae_contig101.140.1 ID=prot_L-elsbetiae_contig101.140.1|Name=mRNA_L-elsbetiae_contig101.140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=204bp
MAEYTERRHVHPNVQRLLTYNIAQRTPEWYEYRSKRVTASEVSVVLAQGR
GAETLMLKKKCGSNYTSFSTEYTRIGTENEGNIVEIYKQMYPSVDVYHNL
SVVPHKTEKHLAASLDACTNTGINVEIKTCFKSSFTKVPKAYRDQVQLQM
AVADLEHTHLVYQYINMPGAPVIVHEIPRSRQWFQDNNSIMRKFVQDLEH
YSPF
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mRNA from alignment at L-elsbetiae_contig101:21989..22600+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig101.140.1 ID=mRNA_L-elsbetiae_contig101.140.1|Name=mRNA_L-elsbetiae_contig101.140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig101:21989..22600+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGAATACACAGAAAGACGGCACGTCCACCCGAACGTCCAACGACT TCTGACCTACAATATCGCTCAGAGAACCCCTGAATGGTACGAGTATAGGT CGAAGAGGGTGACGGCCAGTGAGGTTTCTGTCGTACTCGCACAGGGGAGG GGAGCAGAGACTCTCATGCTGAAGAAGAAATGTGGCTCGAATTACACATC CTTCTCCACGGAATACACCAGAATTGGGACCGAGAACGAGGGGAATATAG TTGAGATCTACAAGCAAATGTACCCGAGTGTCGACGTTTACCACAATCTT TCGGTAGTCCCACACAAGACAGAAAAACACCTCGCGGCATCATTAGACGC TTGTACAAACACCGGGATAAACGTCGAGATAAAGACATGCTTCAAGAGTT CTTTTACAAAGGTCCCAAAGGCGTATAGGGACCAGGTTCAGCTACAAATG GCCGTCGCAGATCTAGAACACACTCATCTTGTGTACCAGTACATCAACAT GCCCGGAGCGCCCGTGATTGTTCACGAGATTCCACGGTCGAGGCAATGGT TTCAAGACAACAATTCAATAATGAGAAAGTTCGTACAGGACCTCGAACAT TATTCTCCCTTT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig101:21989..22600+

>mRNA_L-elsbetiae_contig101.140.1 ID=mRNA_L-elsbetiae_contig101.140.1|Name=mRNA_L-elsbetiae_contig101.140.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1224bp|location=Sequence derived from alignment at L-elsbetiae_contig101:21989..22600+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTGAATACACAGAAAGACGGCACGTCCACCCGAACGTCCAACGACT
TCTGACCTACAATATCGCTCAGAGAACCCCTGAATGGTACGAGTATAGGT
CGAAGAGGGTGACGGCCAGTGAGGTTTCTGTCGTACTCGCACAGGGGAGG
GGAGCAGAGACTCTCATGCTGAAGAAGAAATGTGGCTCGAATTACACATC
CTTCTCCACGGAATACACCAGAATTGGGACCGAGAACGAGGGGAATATAG
TTGAGATCTACAAGCAAATGTACCCGAGTGTCGACGTTTACCACAATCTT
TCGGTAGTCCCACACAAGACAGAAAAACACCTCGCGGCATCATTAGACGC
TTGTACAAACACCGGGATAAACGTCGAGATAAAGACATGCTTCAAGAGTT
CTTTTACAAAGGTCCCAAAGGCGTATAGGGACCAGGTTCAGCTACAAATG
GCCGTCGCAGATCTAGAACACACTCATCTTGTGTACCAGTACATCAACAT
GCCCGGAGCGCCCGTGATTGTTCACGAGATTCCACGGTCGAGGCAATGGT
TTCAAGACAACAATTCAATAATGAGAAAGTTCGTACAGGACCTCGAACAT
TATTCTCCCTTTATGGCTGAATACACAGAAAGACGGCACGTCCACCCGAA
CGTCCAACGACTTCTGACCTACAATATCGCTCAGAGAACCCCTGAATGGT
ACGAGTATAGGTCGAAGAGGGTGACGGCCAGTGAGGTTTCTGTCGTACTC
GCACAGGGGAGGGGAGCAGAGACTCTCATGCTGAAGAAGAAATGTGGCTC
GAATTACACATCCTTCTCCACGGAATACACCAGAATTGGGACCGAGAACG
AGGGGAATATAGTTGAGATCTACAAGCAAATGTACCCGAGTGTCGACGTT
TACCACAATCTTTCGGTAGTCCCACACAAGACAGAAAAACACCTCGCGGC
ATCATTAGACGCTTGTACAAACACCGGGATAAACGTCGAGATAAAGACAT
GCTTCAAGAGTTCTTTTACAAAGGTCCCAAAGGCGTATAGGGACCAGGTT
CAGCTACAAATGGCCGTCGCAGATCTAGAACACACTCATCTTGTGTACCA
GTACATCAACATGCCCGGAGCGCCCGTGATTGTTCACGAGATTCCACGGT
CGAGGCAATGGTTTCAAGACAACAATTCAATAATGAGAAAGTTCGTACAG
GACCTCGAACATTATTCTCCCTTT
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