Homology
BLAST of mRNA_L-elsbetiae_contig57.14078.1 vs. uniprot
Match:
A0A6H5K0J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J1_9PHAE)
HSP 1 Score: 100 bits (249), Expect = 1.700e-22
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = -1
Query: 4 GVSGGTATASQTSSPPPSIMSSDDVSVSSYGHPVTVLPGSPNNMRFDGRPPPSLAKIRLEAVRSPVVRRNS 216
GVSGGT+ + PSIMSSDDVSVSSYGHPVTVLPGSPNN+ F+GRPPPSLAKIRLEAVRSP VRR +
Sbjct: 876 GVSGGTSL-TXXXXXXPSIMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPAVRRGN 945
BLAST of mRNA_L-elsbetiae_contig57.14078.1 vs. uniprot
Match:
D8LF04_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF04_ECTSI)
HSP 1 Score: 95.9 bits (237), Expect = 6.900e-21
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = -1
Query: 4 IMSSDDVSVSSYGHPVTVLPGSPNNMRFDGRPPPSLAKIRLEAVRSPVVRRNS 162
IMSSDDVSVSSYGHPVTVLPGSPNN+ F+GRPPPSLAKIRLEAVRSP VRR S
Sbjct: 563 IMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPAVRRGS 615
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig57.14078.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.70e-22 / Id = 77.46 Expect = 6.90e-21 / Id = 90.57 Sequence A0A6H5K0J1_9PHAE D8LF04_ECTSI
Match Name E-value Identity Description
A0A6H5K0J1_9PHAE 1.700e-22 77.46 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF04_ECTSI 6.900e-21 90.57 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 1
Model size 314
Cds size 312
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622816608.3271184-CDS-L-elsbetiae_contig57:21167..21479 1622816608.3271184-CDS-L-elsbetiae_contig57:21167..21479 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig57 21168..21479 +
1691683681.6822007-CDS-L-elsbetiae_contig57:21167..21479 1691683681.6822007-CDS-L-elsbetiae_contig57:21167..21479 Laminarionema elsbetiae ELsaHSoW15 CDS L-elsbetiae_contig57 21168..21479 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig57.14078.1
>prot_L-elsbetiae_contig57.14078.1 ID=prot_L-elsbetiae_contig57.14078.1|Name=mRNA_L-elsbetiae_contig57.14078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=104bp
AAVAPHYRRAHGLQPDLGQRRRRAAVEPHVVRRAGQHGDRVPVRRDRHVV GGHDGRGRGGCLARSRGAPRHAHEGRASAVNVPVFVSVVITPASTSSSEP AQAR back to top mRNA from alignment at L-elsbetiae_contig57:21168..21481+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig57.14078.1 ID=mRNA_L-elsbetiae_contig57.14078.1|Name=mRNA_L-elsbetiae_contig57.14078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=314bp|location=Sequence derived from alignment at L-elsbetiae_contig57:21168..21481+ (Laminarionema elsbetiae ELsaHSoW15)GCTGCTGTTGCGCCGCACTACCGGCGAGCGCACGGCCTCCAGCCTGATCT
TGGCCAGCGACGGCGGCGGGCGGCCGTCGAACCTCATGTTGTTCGGCGAG
CCGGGCAGCACGGTGACCGGGTGCCCGTACGACGAGACCGACACGTCGTC
GGAGGACATGATGGACGGGGGCGGGGAGGATGTCTGGCTCGCAGTCGCGG
TGCCCCCCGACACGCCCATGAAGGCCGAGCCTCCGCAGTCAACGTCCCCG
TCTTCGTCTCCGTCGTCATCACGCCCGCCTCCACTTCCTCCTCGGAACCC
GCGCAGGCTCGA AC back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig57:21168..21481+
>mRNA_L-elsbetiae_contig57.14078.1 ID=mRNA_L-elsbetiae_contig57.14078.1|Name=mRNA_L-elsbetiae_contig57.14078.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=624bp|location=Sequence derived from alignment at L-elsbetiae_contig57:21168..21481+ (Laminarionema elsbetiae ELsaHSoW15) GCTGCTGTTGCGCCGCACTACCGGCGAGCGCACGGCCTCCAGCCTGATCT TGGCCAGCGACGGCGGCGGGCGGCCGTCGAACCTCATGTTGTTCGGCGAG CCGGGCAGCACGGTGACCGGGTGCCCGTACGACGAGACCGACACGTCGTC GGAGGACATGATGGACGGGGGCGGGGAGGATGTCTGGCTCGCAGTCGCGG TGCCCCCCGACACGCCCATGAAGGCCGAGCCTCCGCAGTCAACGTCCCCG TCTTCGTCTCCGTCGTCATCACGCCCGCCTCCACTTCCTCCTCGGAACCC GCGCAGGCTCGAGCTGCTGTTGCGCCGCACTACCGGCGAGCGCACGGCCT CCAGCCTGATCTTGGCCAGCGACGGCGGCGGGCGGCCGTCGAACCTCATG TTGTTCGGCGAGCCGGGCAGCACGGTGACCGGGTGCCCGTACGACGAGAC CGACACGTCGTCGGAGGACATGATGGACGGGGGCGGGGAGGATGTCTGGC TCGCAGTCGCGGTGCCCCCCGACACGCCCATGAAGGCCGAGCCTCCGCAG TCAACGTCCCCGTCTTCGTCTCCGTCGTCATCACGCCCGCCTCCACTTCC TCCTCGGAACCCGCGCAGGCTCGA back to top