mRNA_L-elsbetiae_contig569.14060.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig569.14060.1
Unique NamemRNA_L-elsbetiae_contig569.14060.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig569.14060.1 vs. uniprot
Match: D7G6G6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6G6_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 2.900e-101
Identity = 170/294 (57.82%), Postives = 185/294 (62.93%), Query Frame = 3 
Query:   15 MEGVLKDGLLQLLQYFHNPELVGSLLLLYVIHVVGLTVNIPHLFLNGLKFIVAPTEEAVLRIRSDAKAPRPEPLGQLDKEGKDANAYDKMNALGLARMEISRGTVGTLMYFPHYEGMVTWSLVALGNLVIAQGSRCAIPTQ---------------------------------------------------------------------------------------RPLGWASLTLCAALLRAWWCNVRLVYLLGSGNDHSKFAALCGFCGLFAAAGAGAMFPPGFFAFDLR 635
            MEG + D LL+LL+YFHNPELVGSLLLLYV+HVVG TVNIPHLFLNGLKFIVAPT+EAVLRIRSDAK PRPEPLGQLD+EGKDANAYDKM+ALGLARME+SRGT+G LMYFP YEGMV W+++ALGN  IAQGSRCAIPTQ                                                                                       RPLGWASLTLC ALLR WWCNVRL+YLLG  ND+SKFA L GFCGLFAAA   AM PP F AFD+R
Sbjct:    1 MEGPVADALLKLLRYFHNPELVGSLLLLYVVHVVGFTVNIPHLFLNGLKFIVAPTQEAVLRIRSDAKGPRPEPLGQLDREGKDANAYDKMDALGLARMEVSRGTLGGLMYFPQYEGMVLWAVIALGNFFIAQGSRCAIPTQTKCEHRGSAKKEKSPRSGAFCTANLVHSLPSAFFDALRCPPTSSFGVPIAHLDSCLLLLPQTPFTPSFSLALFDVLLLLWRDPSGGGRPLGWASLTLCGALLRCWWCNVRLIYLLGLNNDYSKFALLSGFCGLFAAAAVAAMLPPSFLAFDVR 294
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig569.14060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6G6_ECTSI2.900e-10157.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig569contigL-elsbetiae_contig569:17777..23429 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTransmembrane protein 161A/B
Ec32 orthologEc-05_006130.1
Exons5
Model size636
Cds size621
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig569.14060.1prot_L-elsbetiae_contig569.14060.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig569 17791..23429 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.896387-UTR-L-elsbetiae_contig569:17776..177901622816606.896387-UTR-L-elsbetiae_contig569:17776..17790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 17777..17790 +
1691683680.7097323-UTR-L-elsbetiae_contig569:17776..177901691683680.7097323-UTR-L-elsbetiae_contig569:17776..17790Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig569 17777..17790 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816606.9106486-CDS-L-elsbetiae_contig569:17790..178831622816606.9106486-CDS-L-elsbetiae_contig569:17790..17883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 17791..17883 +
1691683680.722755-CDS-L-elsbetiae_contig569:17790..178831691683680.722755-CDS-L-elsbetiae_contig569:17790..17883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 17791..17883 +
1622816606.9235759-CDS-L-elsbetiae_contig569:18768..188641622816606.9235759-CDS-L-elsbetiae_contig569:18768..18864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 18769..18864 +
1691683680.7317245-CDS-L-elsbetiae_contig569:18768..188641691683680.7317245-CDS-L-elsbetiae_contig569:18768..18864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 18769..18864 +
1622816606.9351013-CDS-L-elsbetiae_contig569:20744..208521622816606.9351013-CDS-L-elsbetiae_contig569:20744..20852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 20745..20852 +
1691683680.7460294-CDS-L-elsbetiae_contig569:20744..208521691683680.7460294-CDS-L-elsbetiae_contig569:20744..20852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 20745..20852 +
1622816606.9462333-CDS-L-elsbetiae_contig569:22843..229711622816606.9462333-CDS-L-elsbetiae_contig569:22843..22971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 22844..22971 +
1691683680.7568002-CDS-L-elsbetiae_contig569:22843..229711691683680.7568002-CDS-L-elsbetiae_contig569:22843..22971Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 22844..22971 +
1622816606.960356-CDS-L-elsbetiae_contig569:23233..234291622816606.960356-CDS-L-elsbetiae_contig569:23233..23429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 23234..23429 +
1691683680.7663348-CDS-L-elsbetiae_contig569:23233..234291691683680.7663348-CDS-L-elsbetiae_contig569:23233..23429Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig569 23234..23429 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig569.14060.1

>prot_L-elsbetiae_contig569.14060.1 ID=prot_L-elsbetiae_contig569.14060.1|Name=mRNA_L-elsbetiae_contig569.14060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=207bp
MEGVLKDGLLQLLQYFHNPELVGSLLLLYVIHVVGLTVNIPHLFLNGLKF
IVAPTEEAVLRIRSDAKAPRPEPLGQLDKEGKDANAYDKMNALGLARMEI
SRGTVGTLMYFPHYEGMVTWSLVALGNLVIAQGSRCAIPTQRPLGWASLT
LCAALLRAWWCNVRLVYLLGSGNDHSKFAALCGFCGLFAAAGAGAMFPPG
FFAFDLR
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mRNA from alignment at L-elsbetiae_contig569:17777..23429+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig569.14060.1 ID=mRNA_L-elsbetiae_contig569.14060.1|Name=mRNA_L-elsbetiae_contig569.14060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5653bp|location=Sequence derived from alignment at L-elsbetiae_contig569:17777..23429+ (Laminarionema elsbetiae ELsaHSoW15)
GGCTGCATCAGGCGATGGAAGGTGTGTTGAAGGATGGGCTGCTGCAGCTG
CTTCAATACTTTCACAACCCGGAGCTCGTGGGCTCTCTCCTTCTCTTATA
CGTGATCGTGAGTGGTAGACCAAAGGCAGCAGAATCGGGCGATACACCTC
GCAGTTGATACGCTGCCCGCTGGAGGAGAGAGGCCTCGTTTCTTCCCCCG
AACGGCAAGGGACTGCACGAAGCCTCCCGACTTCTGTTTCTTACCCTTTT
GCGTCCCGCTTTCATGTTTGCAGTGCTTTTGGACGTGGTGCAGCCTCTTT
CCGCGCTTAGCGGGATCGAAACGTTGCTGTGTGTGTCGCGCCTCTCCAGC
AGGGAAGGAACATACACTCCGCGCGGGCGCGCTGTCTGCTTTTTCTTGTA
CCATACCATTGCCTGCCTCTTCGTCTTGCGTTTTATGGTTGGCGCACTAT
CAGATAGGCCCCCAACAGCTTTCAATGAAGCAATCATCTTCATCTACAAC
ACGTAATGAAGCCTTTTCCAGGCCAGATCTCTTCATGCCCGCACAACACA
CACAGCAAGATACGCCGCTAAATTTGGTTCGCCGCTCACAATCATAATCA
TCCGTTCCGTCGTTCAAAGGTAGCCGAACAGTAATAGACCCAAGCTCCTG
TGTACATATGAGCGAAGAACATGAACATGCTTCTGTGCCATCGGATGGAC
ATCACCACGGAGGCAGTGAAGAGTCCAGGACTAAATGTGTACCCTAGATA
ACATACTCCTTGGATCTGATAGATCCAATTTTCGATATTTATTTGGCGTC
GTTGAAACTTTCGTGCCTGCGAAAACAAAACAGCACTACACGCAGTGCAC
TATTTCGTTTACATATGTACGTACGCATGCACGGTGCCTGAACTAGACGT
GTAGTAGACAACGCCGGTTGATAACCCCCTAAAATAGGAAAACTGCAGTA
CCGACGCTCCCGTCATGCTTGTATCTCTCTTACGCCGCGCAGCATGTCGT
CGGTCTCACGGTCAACATCCCGCACTTGTTTCTGAACGGGCTCAAGTTCA
TCGTCGCCCCCACGGAGGAAGCCGTGCTCCGCATCAGGGTGAGGAGCAAC
ATCGAGATATACCCCGCAGGAAGGCTACGTTGTCGTCAGCGTAGAGCCCC
AAGTCACCCTAAACGCAACAACAGTGCTACCGCGTGCCTAATTTTGTATG
TGTACAATGTACCCGTGCGCAAACTTCGGCATCACCGTCGACGAGGGAAA
GGGACGGCTGAACCCTTTTCTCGCGACAAAAAACTTAGGCAAGCACCGCA
GAAGGGGGGAGCGGGGGCCTCGGAGAAAGGAACCCTTCTGTGTGACCACG
GTTCAGTACTCTGGCAAGATGCCCTCGTGGCAGGGAAGGGAGACCATCGA
GCACACGGAAATAAATGTGAAGAATTAACAAAATATGAAAAAAACACCCT
CTCCGGCATTGGCGCCTTCCTCCCTATTAATTGTCGAGGTATCTGGACTA
TCTGTTCCTGGAAAACCGCCCCACTCGTGTGTGCAAACTCGTGCACCCTT
ACGATAGTGGTCGTCTAGTTCACCAGGCGGCAGGTGGCATTGGGGGAGGA
CGAGATGAAAAACAGTGCTGCACGCTGTAGAAAAATAAATTAAAGAATAG
CTGGCAAACGTTTGTGCGGGGCAACCTCTATGCCTCCGCGTGATTTTTAA
CGATAACGATAACGCGTCGCAGACAGAACCAATGGTTACGAAATTTGGCA
CTTAAATAGACTACATGTAGCACCGAAAGTGGCGCGTCGAAATACACACA
GCGGCAGTCAGCAGGGACGATTTTCTCATAAAAATTGCCTCCGCACGGCG
GCTTAGGCTTAGCTTCCCCCTCAACGGTTTAGAAAGGGTGCACTGGTATA
TGAAAGCAGGTGTTATGAGGGTCATTCAGCGCTTGGAGTTTTGCTGCAAC
ACGCAGCATAGGCCGATAACTCGCAATCGGCGCGGAGCGGTATTTGACTT
TACAGCATTTTCCGCCGGATTTTTTTTTTGTATCGAACGAAGAGTGCATA
CGATATCCACGCACATTCAAAATTTGCTTCGCGCCGATTGCGAGTTCTCG
GCCTATACTGCATGTTGCAGAAAAATTCGAACTGCTGAGAAACCCTCACA
ATACCCTCTTTGGCATGCCAGTGCACCCTTCCTAAACCGTTGAGGGAGAA
GCTAAGCTTACGCTGTCGCGCAAACGCGACTTTTATGAGAAATACACCCC
TCTCGACTACTGTTGTGTGTTTTTCGACGCACCACTTTGGGTGCGAACTC
ATAATAGTGTATATAGTTCATGTGCAAAGTTTCAAGACGATCTGTGCTGT
CGACGACGCGTTCTCGGGCTCGGGGGAAATACACGCGCCATCCGGCGGGA
GGTTGCGCCGCACTTTTTGTGCCAGCTATTTGCGGCACAACTCCGAAAGT
TTATTTCGTCGGGTTTGAGGGCAATAGGGGGAGGAACTGGACCAATCAGG
GGTCATTAGACAGGAAAGGCAGAAACCTAAGGCGCTGGCACAGCAGCCGA
AAGGGTGTTTCCGACTGGCGCCCCCTTAAACCGGCGTGCAGCACTGAGAA
GCATGGCCAACAAGTTGGCCCCATCATCTTGCCTAAGAGCGGAGTTAATC
CCTTTGGATGGTGTCCGTGCACTTCTTTGCTTGCGCGCTCTATTATGTAG
AGCGCAACCGTATTATTACTATACCGCAGTAGTAAGGAATACCCCAGCAT
CAGCGAGAGAAACAAAACACGCCTTTTCGCAAACGAAACCGCGTTTCCGC
TGCTGACGCTCGATGGGCTAATTACTGCTGTGTGTTGTTTTTGCTTCGGT
CGCACACCGGTGCTGTTGTTGCCCCCGCTCGATGGGAAACTAACTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGTGTTGTTTTGTGCCTCGGTCGTGCTGC
CGAACCGACCTGAAGCAGTCCGACGCGAAGGCCCCGCGTCCTGAGCCCCT
TGGACAGCTCGACAAAGAGGGGAAGGACGCCAACGCGTACGACAAGATGA
ACGCTCTCGGCCTCGCGAGAATGGAGGTAAATTGGTGACCATAATAAACC
TGCCGTAGGTGGCGTGTAAGATACCACACCCCCTGGACCGAATTTCAGAG
CTCCATTTCATACTCCGTAGTAACGAAGAAGGTGCCACAGCACCAAGCAA
CGCATTTTCGGACAGCGCTCGACTAGATCTTTCCAACGCCGCACTCCCTT
TCGGCACTTAATAGCACTCTTCTTGCTGGGGAGGAATCGAGGCTCGAAAA
CCTGTCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAACCCTAAACCC
GAATGACCATCGGTCTCGTATCGGCCTCTTGAGGTGACCGTAAACCTAGT
CCTGACCGCAGCCGTACCCCTATGTAGCTCAGAACGAGCCATCGAGCCAT
CGATTTGTCTCGTATCGGCCTCGTGGTGGCTAACTACTATACGGGGTGTG
CGTCCGCCCAGGGGTTACGTAACAACACGAGCTACTAGGGTGTGCGTCCC
CCCGGCGGGGTAACAACACGAGCTAAGAAGAGTACCATGGGAGTATTTAT
TTAGCTCACCTTTTCTTGATGTGTTCTTGCATGGTGGTTGGAGGTGTCCT
TTTGAGCCTCAAGTGGTGTGTCTCTGTCACACGATCGGGCCAGGATGCAC
GATGGCTGCCTGCCCTCCCTCCGGGCTAAGTTTTTTTTTTCTTCTTAGAC
CTGGAGACTAAATAAAAAGAGAGCACCGTACATGCATGAATATGTATGTA
TGTACGGTAAGAATTGTTCTGCTGTTTGCCCCCCTGAGCTCGCGTTTTTT
TTTCTTTTTCAGCCCTCGTTTTTTCTTCTCCCGTAAGATAAAACGATAAT
TTCGGGGGGTGACGGCATTTACTTTTTCCTGCCGATGGCTTGTCCCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCAG
ACGGTGTCAGCGATGCTGAAGCTCGCTGTGCCGACAGACTTTCGGTTTGC
GCCTCGACATGAAAACATAAAAACCAGCATGCTTCTTCTTGTTCGTCATC
ACATTTAACCAACGCTCTCGAGGGGGCCCCGTGCCAGCGCTCGAAGGGCA
CCGGGCCGCCACGGAGAAGGGTCGCTCCCCCGAGGCCCCCATACCGCGCA
CCCCTGTGCGGCGCTCGCCTCGGACCTTTCAACGCTATTTAGCCCTTTCC
CTTCGGTGTGCACGCGAACTAGCGCTGGCATGGGTCGTTTCTTTGTTCCT
CGTGCCACACATTTTTTTTTTTTTTTTATCACGAGCGGCCTCATTCCATT
CCCCGCCCGTGCGTTGCGTTGCTCCGAGTAACGGACAACACACAGCAGTG
GACCAGTGCCCGAGAAACGTCTACATAACTGCTGTGTCCCCGTGGTATGT
AGCGTGTGTCCTCGCGTTCGAAAGGAAGTACACATGTACGCCACCCCTCG
CCTTTTTTTTTTTTTTCCCACGGTATGTATGTATATGTATGTTGTACGTT
GTCTTCACATTAAAAACCGTTCCGATCTCTCCATCCAGTACCTCTCAATG
TCCGTACTACTCCAACACTTGATGCGGTCAATTCCCGTGCTCACAGGCTA
ACTTATACCCTAAAAATAAAATGGACCCGAAGGGCCAGCAAAGCAACAAT
AAATGGTGCTGTTGTAAAAGACACTGCTTTGGGTGTGGCCGCTTGTCTCT
GCTGGTCGGCCACTGCTACTATCCTTTCGTCTGCTAAATTAGTCGTGTGC
TCCGTAGTTCTAGCGCTTCCTGGTGCTTTCGCTATATACGACTAGCTACA
CGCTTGCTTTCCTCCGGACTGAAACCGGGTTCTTGCTTTCTTTTCTTGAC
AACCCCGGGTCACCGAAATAATGCCTTGTTGCAATCCTTGCCGTTACACA
ATAAACTTACTTTCTCGTCGATGACTAGAAATTTGCGTTTTTTATTTTAA
TATCCACAGTACTCTGTTGTAAATACATAACTAAACTACGCTCGATGGCT
GCGCTTGCTTGCTGCAGATATCACGAGGGACGGTTGGAACCTTGATGTAC
TTCCCGCACTACGAGGGGATGGTGACGTGGTCTCTTGTGGCCCTCGGAAA
TCTAGTCATCGCGCAGGGGAGCCGCTGCGCGATCCCCACGCAACGGTACG
TACGAGGGGCAAGGGCGGCCGGCTTTGGCGTCGTCGACGAAATGATGAAT
ATCGTTTTTTTTTTATTAATGTTCGCCATTATTTGTTTAAGTGCCGGTTC
GGGGCGGTTTCGCGAGGACTGCCGTTTTGCCGCGCCCCCTCGCATTATTT
CTTTGTGCACGATCTCTCGACACACGCTTGTCGCCCCCCCTCTCGCCCGG
ACACGTGCCCCCACCCCCCCGTCGCTGCCGCCACCGTGCCCCCTGTCGCC
CCCGCAGCCCCCTGGGTTGGGCGAGCCTCACGCTCTGCGCCGCCCTGCTG
CGCGCGTGGTGGTGCAACGTTCGCCTGGTGTACCTCCTCGGATCCGGCAA
CGACCACAGCAAGTTCGCCGCGCTCTGCGGCTTCTGCGGCCTCTTCGCCG
CGGCGGGCGCGGGGGCCATGTTCCCCCCCGGGTTCTTCGCGTTCGACCTC
CGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig569:17777..23429+

>mRNA_L-elsbetiae_contig569.14060.1 ID=mRNA_L-elsbetiae_contig569.14060.1|Name=mRNA_L-elsbetiae_contig569.14060.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1242bp|location=Sequence derived from alignment at L-elsbetiae_contig569:17777..23429+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAAGGTGTGTTGAAGGATGGGCTGCTGCAGCTGCTTCAATACTTTCA
CAACCCGGAGCTCGTGGGCTCTCTCCTTCTCTTATACGTGATCATGGAAG
GTGTGTTGAAGGATGGGCTGCTGCAGCTGCTTCAATACTTTCACAACCCG
GAGCTCGTGGGCTCTCTCCTTCTCTTATACGTGATCCATGTCGTCGGTCT
CACGGTCAACATCCCGCACTTGTTTCTGAACGGGCTCAAGTTCATCGTCG
CCCCCACGGAGGAAGCCGTGCTCCGCATCAGGCATGTCGTCGGTCTCACG
GTCAACATCCCGCACTTGTTTCTGAACGGGCTCAAGTTCATCGTCGCCCC
CACGGAGGAAGCCGTGCTCCGCATCAGGTCCGACGCGAAGGCCCCGCGTC
CTGAGCCCCTTGGACAGCTCGACAAAGAGGGGAAGGACGCCAACGCGTAC
GACAAGATGAACGCTCTCGGCCTCGCGAGAATGGAGTCCGACGCGAAGGC
CCCGCGTCCTGAGCCCCTTGGACAGCTCGACAAAGAGGGGAAGGACGCCA
ACGCGTACGACAAGATGAACGCTCTCGGCCTCGCGAGAATGGAGATATCA
CGAGGGACGGTTGGAACCTTGATGTACTTCCCGCACTACGAGGGGATGGT
GACGTGGTCTCTTGTGGCCCTCGGAAATCTAGTCATCGCGCAGGGGAGCC
GCTGCGCGATCCCCACGCAACGATATCACGAGGGACGGTTGGAACCTTGA
TGTACTTCCCGCACTACGAGGGGATGGTGACGTGGTCTCTTGTGGCCCTC
GGAAATCTAGTCATCGCGCAGGGGAGCCGCTGCGCGATCCCCACGCAACG
CCCCCTGGGTTGGGCGAGCCTCACGCTCTGCGCCGCCCTGCTGCGCGCGT
GGTGGTGCAACGTTCGCCTGGTGTACCTCCTCGGATCCGGCAACGACCAC
AGCAAGTTCGCCGCGCTCTGCGGCTTCTGCGGCCTCTTCGCCGCGGCGGG
CGCGGGGGCCATGTTCCCCCCCGGGTTCTTCGCGTTCGACCTCCGGCCCC
CTGGGTTGGGCGAGCCTCACGCTCTGCGCCGCCCTGCTGCGCGCGTGGTG
GTGCAACGTTCGCCTGGTGTACCTCCTCGGATCCGGCAACGACCACAGCA
AGTTCGCCGCGCTCTGCGGCTTCTGCGGCCTCTTCGCCGCGGCGGGCGCG
GGGGCCATGTTCCCCCCCGGGTTCTTCGCGTTCGACCTCCGG
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