mRNA_L-elsbetiae_contig5688.14056.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: A0A6H5KQS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS9_9PHAE) HSP 1 Score: 143 bits (361), Expect = 2.730e-34 Identity = 84/184 (45.65%), Postives = 116/184 (63.04%), Query Frame = 3
Query: 246 PRPTTEEDGVLMYVQEVVSGAAT---------------LLQQVPVVGGVCATFLSLQKLVETARSNEEDLANLCDLCDVVIKGVLDKHSDRSGLYQGFVALEVHVKKAEEVAKRCNGVGRKRSLKRFFLTRKTSDAIAAIRSNILSLTTANTLALTEETLEKVGKLPTEVAEKLETRDQLTVTR 752
P PT E Y++EV+ GAAT LL++ PVVG VC TFL+ ++LVETARSN++DLA L +LC VV+ GVLDK SDRSGL + F ALE HV KAEEVA+ CN GR +KR L R+ + I ++ +N++ AN +A++ +T KV KL + +K+E +LT+T+
Sbjct: 11 PSPTNNEASFFTYLREVLLGAATFSEEVPAANASEAAHLLEEFPVVGTVCKTFLAFEQLVETARSNKDDLATLRELCCVVVAGVLDKRSDRSGLSKRFEALEKHVNKAEEVAQLCNSSGR---VKRKVLARRICEDIVSVMNNVVEFCAANNVAISNDTNAKVVKLGMALDDKIEAMQRLTITQ 191
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: A0A6H5KXU5_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXU5_9PHAE) HSP 1 Score: 146 bits (369), Expect = 4.020e-32 Identity = 152/493 (30.83%), Postives = 208/493 (42.19%), Query Frame = 3
Query: 1137 VADLASRAKVPPSAPNIRD*FVERKATVGLACDRLGIGSNATDAS---EEPRMVRAGGARWRGE------VQCRVDGDRAR*WCGPPSRRGCRGSRLGKAQRRSHVRSGRNSLRGCAGHLEKEK*SGFRQRTRGR-----AGLHSGGGGRSQLELSGCSP-------DDVWEVEVLEEWKRVGVWIHCCKYTSRKVAYFLKHRPIRLDIPGSEQGSRVEVLRRGAGLADDADLPEAAYDLMKLCEMR*CTWPS*GGGFVAGMSGRPGRRCWGPHQDC----SRGGRGWPAHTLVRGCVARRDGGTVV*QHPDQRALYRP-GSDTQGAGFP--------VGDS------KAAIIVVATLERLSILTLEDG-GQYRVHDDHTDFI*GRFAANQDVRDSALPRWREYVSSVRALLKFSSVWMTRV--------------SFHNHTTGSYM**IS-RVLAAQKRFKQWHIAPTRWRHDWSDASDRNAQLVKIQELFA 2447
V + R +P AP+IRD +VER C LGIG++ S E+PRMV G G+ V +VD + G+ S + ++ L L K Q+ R G++S G E +G DDVW+ EVL E +R G W+ YT+RK F + IRL+ E+ + LRR A L + LP AAY+LM+ C+ G + GR R W D R G R V R G + +P LY G FP GD KAA V+ TLERLSILTLE+ G Y VH++H DF+ R A RD+ALPRWR+Y+SSVRAL +SS W+ +V S +N + M +L A +R ++H R DWS+A D+ ++L+ I+E A
Sbjct: 166 VMEKPGRVNIPSGAPSIRDWYVERVKVEAQICHHLGIGTSNGIPSFPEEQPRMVGLAGPGGAGKSTVASMVVTQVD---------------VQAFFRGRVLWLSVGKGAKDRLPTLMFELAKTVRETVLQKMARRPREATVGINSEDGAAYIREEAGKGDTRFLVVADDVWDAEVLAELRRAGAWVI---YTTRKAELFPETPAIRLEEVLEEEAEMM--LRRAADLGEKTRLPPAAYELMRRCDFSVLDLALVG--RWGKIRGRSCERAWRAALDSIIETQRAGGDGGQLLPWRAAVLRAGLGVLASDNPQTTELYYALALLPTGLAFPPEVALILLYGDDFSESALKAAEAVLGTLERLSILTLEENSGWYHVHENHVDFVLDRPLAKHYTRDTALPRWRQYISSVRALNTYSSAWLDKVWEKLAKVEGEGFVRSPYNAALSAIMDDSEGELLEALRRAAEFHFC----RGDWSEAFDKYSELLLIKEQTA 632
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: D8LRZ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ9_ECTSI) HSP 1 Score: 135 bits (341), Expect = 6.370e-32 Identity = 85/198 (42.93%), Postives = 120/198 (60.61%), Query Frame = 3
Query: 204 MEAPLPTIPSVAQRPRPTTEEDGVLMYVQEVVSGAAT---------------LLQQVPVVGGVCATFLSLQKLVETARSNEEDLANLCDLCDVVIKGVLDKHSDRSGLYQGFVALEVHVKKAEEVAKRCNGVGRKRSLKRFFLTRKTSDAIAAIRSNILSLTTANTLALTEETLEKVGKLPTEVAEKLETRDQLTVTR 752
M AP T+P +Q E Y++EV+SGAAT L+++ PVVG VC TFL+ ++L ETARSN++DLA L +LC VV+ VLDK SDRSGL +GF ALE HV KAEEVA+ CN GR LKR L R+ + I ++ ++++ AN + ++ +T KV KL + +K+E +LT+T+
Sbjct: 1 MAAPSNTVPVPSQ----INSEVSFFAYLREVLSGAATSSEEVPVAVALEAAHLVEEFPVVGIVCKTFLAFEQLAETARSNKDDLATLRELCCVVVTEVLDKRSDRSGLSKGFEALEKHVNKAEEVAQLCNSGGR---LKRQVLARRICEDIVSVMNDVVEFCAANNVPISNDTHAKVVKLGVTLDDKIEATQRLTMTQ 191
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: D7G5Y4_ECTSI (NB-ARC and TPR containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y4_ECTSI) HSP 1 Score: 142 bits (359), Expect = 2.540e-31 Identity = 152/491 (30.96%), Postives = 203/491 (41.34%), Query Frame = 3
Query: 1155 RAKVPPSAPNIRD*FVERKATVGLACDRLGIGSNATDAS---EEPRMVRAGGARWRGE------VQCRVDGDRAR*WCGPPSRRGCRGSRLGKAQRRSHVRSGRNSLRGCAGHLEKEK*SGFRQRTRGR-----AGLHSGGGGRSQLELSGCSP-------DDVWEVEVLEEWKRVGVWIHCCKYTSRKVAYFLKHRPIRLDIPGSEQGSRVEVLRRGAGLADDADLPEAAYDLMKLCEMR*CTWPS*GGGFVAGMSGRPGRR----CWGPHQDC----SRGGRGWPAHTLVRGCVARRDGGTVV*QHPDQRALYRP-GSDTQGAGFP--------VGDS------KAAIIVVATLERLSILTLEDG-GQYRVHDDHTDFI*GRFAANQDVRDSALPRWREYVSSVRALLKFSSVWMTRV--------------SFHNHTTGSYM**IS-RVLAAQKRFKQWHIAPTRWRHDWSDASDRNAQLVKIQELFA 2447
R +P AP+IRD +VER C LGIG++ S E+PRMV G G+ V +VD + G+ S + ++ L L Q+ R G++S G E +G DDVW+ EVL E +R G W+ YT+RK F IRL+ E+ + LRR A L + A LP AAY+LMK C+ + G G RR W D R G R V R G + +P LY G FP GD KAA V+ TLERLSILTLE+ G Y VH++H DF+ R A RD+ALPRWR Y+SSVRAL +SS W+ +V S +N + M +L A +R ++H R DWS+A D+ + L+ I+E A
Sbjct: 6 RVNIPSGAPSIRDWYVERVGVATQICHHLGIGTSNGIPSFPGEQPRMVGLAGPGGAGKSTVASMVVTQVD---------------VQAFFRGRVLWLSVGKGAKDRLPALMFELANRVRETVLQKMARRPREATVGINSEDGAAYIREEAGKGDTRFLVVADDVWDAEVLGELRRAGAWVI---YTTRKTELFPGTPAIRLEEVLEEEAEMM--LRRAADLGEQARLPPAAYELMKRCDFAVLDLA------LVGRWGNIRRRSCESAWRAALDSIIETQRAGGDGGQLLPWRAAVLRAGLGVLASDNPQTTELYYALALLPTGLAFPPEVALILLYGDDFSESALKAAEAVLGTLERLSILTLEENSGWYHVHENHVDFVLDRPLAKHYTRDTALPRWRRYISSVRALNTYSSAWLDKVWEKLSKVEGEGFVRSPYNAALNAIMDDSEGELLEALRRAAEFHFC----REDWSEAFDKYSNLLLIKEQTA 466
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: A0A6H5KZP3_9PHAE (NB-ARC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KZP3_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.410e-25 Identity = 134/424 (31.60%), Postives = 180/424 (42.45%), Query Frame = 3
Query: 1149 ASRAKVPPSAPNIRD*FVERKATVGLACDRLGIGSNATDASEEPRMVRAGGARWRGE------VQCRVD--------------GDRAR*WCGPPSRRGCRGSRLGKAQRRSHVRSGRNSLRGCAGHLEKEK*SGFRQRTRGRAGLHSGGGGRSQLELSGCSPDDVWEVEVLEEWKRVGVWIHCCKYTSRKVAYFLKHRPIRLDIPGSEQGSRVEVLRRGAGLADDADLPEAAYDLMKLCEMR*CTWPS*GGGFVAGMSGRPGRRCWGPHQDCSRGGRGWPAHTLVRG----CVARRDGGTVV*QHPDQR---ALYRPGSDTQGAGFPVG---DSKAAIIVV-----------------ATLERLSILTLEDGGQYRVHDDHTDFI*GRFAANQDVRDSALPRWREYVSSVRALLKFSSVWMTRV 2279
A VP AP I + VERK V ACD LGIGS ++ E PR+V G G+ V R D G+ A+ C P L + + +R R ++ E +G+ +H + L DD+ E EVLEE K GVW+ YTSR+ +RLD E+G V LRR AGL DDA LP AA++LM+ CE G +GR G ++ R G A RG +A RD ++ PD+ +L+ A P G SK A +++ TLERLSILTLE G+YRVH+ H DF+ AN + R+ AL RWR Y S +RAL +SS W+ ++
Sbjct: 119 AGEVAVPSGAPRIHEWHVERKEAVAEACDSLGIGSGKSEFFEMPRVVGMSGPGGSGKSTLASMVIARQDVREYFYKGVLWLPVGEGAK-HCLPELM-----LHLARMVYETVLRKACRPPRLAGVGVDPEDGAGY---------IHEVVNESNHRFL--VVADDIREPEVLEELKWAGVWV---LYTSRRDDLLTGAPLLRLDAVTKEEGGMV--LRRAAGLGDDATLPPAAHELMQRCEY---------GAMQLAFAGRWGVVRGKSDEEAWRAALGHIAEAQKRGGNGRLLAWRD--AMLRIGPDELEADSLHTKELYLSLAILPKGLAFRSKVAAVLLYGDECSADELEAAGKALETLERLSILTLEVSGKYRVHEVHADFVRECEVANNEEREMALARWRGYASDLRALSTYSSAWLVKI 509
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: D7G0G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0G6_ECTSI) HSP 1 Score: 105 bits (261), Expect = 5.920e-20 Identity = 66/149 (44.30%), Postives = 90/149 (60.40%), Query Frame = 3
Query: 246 PRPTTEEDGVLMYVQEVVSGAATLLQQ-----VPVVGGVCATFLSLQKLVETARSNEEDLANLCDLCDVVIKGVLDKHSDR-SGLYQGFVALEVHVKKAEEVAKRCNGVGRKRSLKRFFLTRKTSDAIAAIRSNILSLTTANTLALTEE 674
P P+ L+YVQEVV+GAA LLQ+ VP++G VC TFL+ ++L ETA+SN E L+ L DLC V+ GVLD +R S L +GF L+ V KA EVAK CNG ++R RK + IA IR+++L+ L L ++
Sbjct: 19 PSPSKAIVDALVYVQEVVAGAAMLLQEMPAEVVPILGTVCKTFLAFEQLAETAKSNREALSMLQDLCKSVVNGVLDSRKERPSILKEGFAQLQEQVDKAVEVAKLCNGS----CMRRLLWARKIRNDIAGIRADVLAYCAVINLVLADD 163
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: D7G246_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G246_ECTSI) HSP 1 Score: 88.2 bits (217), Expect = 3.590e-14 Identity = 72/198 (36.36%), Postives = 88/198 (44.44%), Query Frame = 3
Query: 1731 VLRRGAGLADDADLPEAAYDLMKLCEMR*CTWPS*GGGFVAGMSGRPGRRCWGPHQD----CSRGGRG-----WPAHTLVRG----------------CVARRDGGTVV*QHPDQRALYRPGSDTQGAGFPVGDSKAAIIVVATLERLSILTLEDGGQYRVHDDHTDFI*GRFAANQDVRDSALPRWREYVSSVRALL 2249
VLRR A L + A LP+A Y+LM+ CE G V + GR + W D GG G W A L G +A G LY D +G + D + A V ATLER SIL GG YRVHD+H+DFI G + N+D +D L RWR Y+SSVRALL
Sbjct: 34 VLRRAADLDESAVLPDAGYELMRRCEFVVLDIAFVGRWGV--VRGRRKEKAWQMALDRILEAQAGGEGVGPLSWRASVLRAGLEELAVDNPLNKELYLALAVLPMGLTFPSEVAAALLY----DDALSGEDLEDLEVAEEVAATLERWSILIRMGGGNYRVHDEHSDFIRGCLSTNKDTQDRVLRRWRRYISSVRALL 225
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: D7FQM2_ECTSI (Tetratricopeptide TPR_2 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQM2_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 2.560e-9 Identity = 54/153 (35.29%), Postives = 72/153 (47.06%), Query Frame = 3
Query: 2034 GAGFPVGDSKAAIIVVATLERLSILTLEDGGQYRVHDDHTDFI*GRFAANQDVRDSALPRWREYVSSVRALLKFSSVWMTRV--------------SFHNHTTGSYM**IS-RVLAAQKRFKQWHIAPTRWRHDWSDASDRNAQLVKIQELFA 2447
G F KAA V+ TLERLSI H DF+ R A RD+ALPRWR Y+SSVRAL +SS W+ +V S +N + M +L A +R ++H R DWS+A D+ + L+ I+E A
Sbjct: 229 GDDFSESALKAAEAVLGTLERLSI--------------HVDFVLDRPLAKHYTRDTALPRWRRYISSVRALNTYSSAWLDKVWEKLSKVEGEGFVRSPYNAALNAIMDDSEGELLEALRRAAEFHFC----REDWSEAFDKYSNLLLIKEQTA 363
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Match: A0A6H5JL31_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL31_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 8.690e-7 Identity = 85/280 (30.36%), Postives = 118/280 (42.14%), Query Frame = 1
Query: 1291 GLAGPGGAGKSNAASMVIARDD-----GAGHLQEGGAVAAGWARLKDALMFDLAEIVCEAV-QATSKRKNKAGFDSEPEDGPAYIREVVDEANWNFLVVAPTMFGRWKS*RSGRGLECG--YTAVN---IPAAR*PTS*NTGQYV*IYQGLNKEVELKF-----CGEEPVLPMMQTFQKRRMT**SCAKCGDVLGLREAVGSWQECQAGLAD----GVGGRIRIVQEGGEDGQRIPWCVVVLRAGMEELSFDNIQIKELFIVLAVIPKGLVFPLEIARPL 2070
GLAG GG+GKS ASMVI R+D G L AG RL + L+ LA +V E V Q + K ++ ED AYI+ + E FLVVA ++ R G YT+ N +P A V + Q +E E+ ++ LP RR C + VG W + ++ G I Q GE + W VL G+EEL+ +N +EL++ LAVIP+G FP ++A L
Sbjct: 68 GLAGAGGSGKSTVASMVIRREDVRAFFPGGVLWLSVGQRAGRDRLLE-LLTSLAGMVYETVFQKRCRPLRKGVIGTDDEDPAAYIQCLQVERPRRFLVVADDVWQTEVLDELRRASVWGVLYTSRNTDLLPRA---------PVVLLDQLDREEAEMVLRNAAELAKDACLPEAAYDLMRR--------CEYAALDLDFVGRWSRTRRRTSELAWRGALDCIVDAQTRGEGRLPLSWRAAVLHTGLEELAGENSANRELYLALAVIPRGQPFPPDVAAVL 329 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5688.14056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5688.14056.1 >prot_L-elsbetiae_contig5688.14056.1 ID=prot_L-elsbetiae_contig5688.14056.1|Name=mRNA_L-elsbetiae_contig5688.14056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=331bp MEAPLPTIPSVAQRPRPTTEEDGVLMYVQEVVSGAATLLQQVPVVGGVCAback to top mRNA from alignment at L-elsbetiae_contig5688:6763..12165+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5688.14056.1 ID=mRNA_L-elsbetiae_contig5688.14056.1|Name=mRNA_L-elsbetiae_contig5688.14056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5403bp|location=Sequence derived from alignment at L-elsbetiae_contig5688:6763..12165+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5688:6763..12165+ >mRNA_L-elsbetiae_contig5688.14056.1 ID=mRNA_L-elsbetiae_contig5688.14056.1|Name=mRNA_L-elsbetiae_contig5688.14056.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1986bp|location=Sequence derived from alignment at L-elsbetiae_contig5688:6763..12165+ (Laminarionema elsbetiae ELsaHSoW15)back to top |