mRNA_L-elsbetiae_contig5673.14033.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5673.14033.1
Unique NamemRNA_L-elsbetiae_contig5673.14033.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: D8LNF7_ECTSI (Transmembrane protein 107 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNF7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.870e-35
Identity = 67/81 (82.72%), Postives = 73/81 (90.12%), Query Frame = 1
Query:    1 MRIEDRVIPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMK 243
            M+IEDRVIPARFLVT+GHLVGV L+ KTKSDNVYAGLS DPT AEVA A   +NAALA+AMVCFGLDF+SLFFGLSIFMMK
Sbjct:    1 MKIEDRVIPARFLVTLGHLVGVILISKTKSDNVYAGLSSDPTAAEVATANGHVNAALALAMVCFGLDFMSLFFGLSIFMMK 81          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: A0A7S2UVK1_9STRA (Transmembrane protein 107 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVK1_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.300e-28
Identity = 53/113 (46.90%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 MRIEDRVIPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANFISEEWDYRCLWRV 339
            M +E R+IPARFL+T+GHL+   +V     + VYAGLS D T  E+AAAT+++  A+ +A++CF +D + L  G +IF  +VN  Q +AHF G I ++ FI E WDYR LW +
Sbjct:    1 MGLERRLIPARFLITLGHLIPTVMVMYVMEEQVYAGLSADATDKEIAAATAELEGAVLLAIICFLVDLLGLVAGFTIFSTRVNVFQIIAHFVGGIQVSTFIHEVWDYRVLWYI 113          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: A0A835ZGM2_9STRA (Transmembrane protein 107 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGM2_9STRA)

HSP 1 Score: 105 bits (263), Expect = 5.850e-27
Identity = 56/113 (49.56%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    4 RIEDRVIPARFLVTIGHLVGVALVFKTKSDNVYAGLSY-DPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANFISEEWDYRCLWRV 339
            RIE+ +IPARFL T+GH + V ++  +K+  V AGL+   P+  ++AAA S++N AL  A+ CF LDF  L FG S FM KVNALQ + HFAG +L +  + EEWDYR  W +
Sbjct:    4 RIEEALIPARFLTTLGHFLAVLILAGSKATVVNAGLAGGQPSADDIAAANSEVNGALIFALFCFLLDFAGLGFGFSAFMPKVNALQILVHFAGGVLTSRLVVEEWDYRVFWYI 116          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: A0A7S3NE17_9STRA (Transmembrane protein 107 n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NE17_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.420e-22
Identity = 41/112 (36.61%), Postives = 72/112 (64.29%), Query Frame = 1
Query:    4 RIEDRVIPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANFISEEWDYRCLWRV 339
            R+ + +IPARF++T+GHLV + ++  TK +N++AGL  DP+   +  A  +   A  ++++CF  D   +FFG SIF +K+N LQ + HF G ++++  I + W Y+ +W +
Sbjct:    5 RVLEVLIPARFVLTVGHLVAMLMIAYTKRENLFAGLPVDPSNTRLDKAKKEFEIAYILSLICFAFDLFGIFFGTSIFFVKMNLLQIICHFTGGVMVSLMIEQAWQYQYIWLI 116          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: F0YLV6_AURAN (Transmembrane protein 107 (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YLV6_AURAN)

HSP 1 Score: 91.7 bits (226), Expect = 1.810e-21
Identity = 43/106 (40.57%), Postives = 66/106 (62.26%), Query Frame = 1
Query:   22 IPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANFISEEWDYRCLWRV 339
            IPARF++T+GHLV + ++  TK +N+ AGL  DP  A    A ++  AA  + + CF  D V +  G S+F  K N LQ + HFAG +L+++ I++ W Y+ +W V
Sbjct:    2 IPARFMLTMGHLVSLLMIVYTKKENILAGLPRDPGKARYDEAKAEFEAAYVVCLACFVFDMVGILTGTSLFFPKANLLQIICHFAGGVLVSSMIAQSWQYQYIWLV 107          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: A0A8J2S4M7_9STRA (Transmembrane protein 107 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S4M7_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.530e-17
Identity = 40/104 (38.46%), Postives = 62/104 (59.62%), Query Frame = 1
Query:   22 IPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANFISEEWDYRCLW 333
            IPARFL+T+GHLV V  +  T+ +N+ + +S DP  A+      +   A AI +VCF +D + +  G S+F  K N LQ + HF G+  I + I++ W Y+ +W
Sbjct:   10 IPARFLLTVGHLVSVLTMVHTRKENLSSAVSADPKDAQ-----KEFMMAYAICLVCFAVDVLGILMGTSLFFPKANLLQIICHFVGSCFITSMITQSWQYQYIW 108          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: A0A3P3Y2A6_PLABS (Transmembrane protein 107 n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y2A6_PLABS)

HSP 1 Score: 79.7 bits (195), Expect = 1.020e-16
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 1
Query:    1 MRIEDRVIPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANFISEEWDYRCLWRV 339
            M IE  ++P RFL+T  HL+ +  +F +K  N+ A L    T  + ++  + + AAL IA+VCF ++++ +F G+SI     N+   VAHF GAILIA+F  E W+   +W V
Sbjct:    1 MGIESTLLPTRFLLTTVHLMAILTLFNSKDANIRAALPISYTTVQYSSMNNQMLAALWIAVVCFIVEYLGMFSGVSIMKHAHNSFYVVAHFIGAILIASFALESWNMLAIWYV 113          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: A0A7S3HJZ1_9STRA (Transmembrane protein 107 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJZ1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.870e-13
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 1
Query:    7 IEDRVIPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANFISEEWDYRCLWRV 339
            ++  +I ARF+ T+GH + + L+F T  +N+   L  +    E   AT    AAL I  +CF  DF  LFFG S+F    N    + HF G IL++  ++  W+Y+ LW +
Sbjct:    4 VQQYLISARFITTMGHFIALLLLFSTIDNNIDESLGDNYDSEEKQWATETSWAALIIGFLCFVCDFAGLFFGTSLFYNTGNMFHILVHFIGGILLSWVVTYSWNYKALWPI 114          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: A0A6H5JQF3_9PHAE (Transmembrane protein 107 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF3_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.390e-11
Identity = 26/33 (78.79%), Postives = 32/33 (96.97%), Query Frame = 1
Query:  241 KVNALQTVAHFAGAILIANFISEEWDYRCLWRV 339
            +VNALQTVAHF+GA+LIA+FISE WDYRCLW++
Sbjct:   14 RVNALQTVAHFSGAVLIAHFISEAWDYRCLWQI 46          
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Match: A0A1S8W9G7_9FUNG (Transmembrane protein 107 n=1 Tax=Batrachochytrium salamandrivorans TaxID=1357716 RepID=A0A1S8W9G7_9FUNG)

HSP 1 Score: 67.4 bits (163), Expect = 7.540e-11
Identity = 40/113 (35.40%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    1 MRIEDRVIPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAATSDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANFISEEWDYRCLWRV 339
            M I   +IPARFLVTIGHL+   + F TK  N+ + L    T+ +  A    + AAL +  + F ++F  L  G ++F    + +  VAH AG I ++ F++E W Y   W +
Sbjct:    1 MTILSSIIPARFLVTIGHLIATIMAFLTKDSNIMSALPISSTL-DYRAFEQSLVAALILTWILFVIEFSGLLSGRTMFCTASSTIHIVAHAAGMISLSLFMTEGWHYITYWYI 112          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5673.14033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
D8LNF7_ECTSI5.870e-3582.72Transmembrane protein 107 n=1 Tax=Ectocarpus silic... [more]
A0A7S2UVK1_9STRA3.300e-2846.90Transmembrane protein 107 n=1 Tax=Fibrocapsa japon... [more]
A0A835ZGM2_9STRA5.850e-2749.56Transmembrane protein 107 n=1 Tax=Tribonema minus ... [more]
A0A7S3NE17_9STRA1.420e-2236.61Transmembrane protein 107 n=2 Tax=Aureoumbra lagun... [more]
F0YLV6_AURAN1.810e-2140.57Transmembrane protein 107 (Fragment) n=1 Tax=Aureo... [more]
A0A8J2S4M7_9STRA6.530e-1738.46Transmembrane protein 107 n=1 Tax=Pelagomonas calc... [more]
A0A3P3Y2A6_PLABS1.020e-1638.94Transmembrane protein 107 n=1 Tax=Plasmodiophora b... [more]
A0A7S3HJZ1_9STRA2.870e-1335.14Transmembrane protein 107 n=1 Tax=Spumella elongat... [more]
A0A6H5JQF3_9PHAE1.390e-1178.79Transmembrane protein 107 n=1 Tax=Ectocarpus sp. C... [more]
A0A1S8W9G7_9FUNG7.540e-1135.40Transmembrane protein 107 n=1 Tax=Batrachochytrium... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5673contigL-elsbetiae_contig5673:10132..11324 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue2.2e-17
Seed eggNOG ortholog44056.XP_009041455.1
Preferred nameTMEM107
Hectar predicted targeting categorysignal anchor
GOsGO:0003002,GO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0007275,GO:0007389,GO:0007399,GO:0008104,GO:0008150,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009987,GO:0016043,GO:0021532,GO:0021915,GO:0022607,GO:0030030,GO:0030031,GO:0030326,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035869,GO:0036038,GO:0042733,GO:0042995,GO:0043009,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0048598,GO:0048731,GO:0048736,GO:0048856,GO:0051179,GO:0051641,GO:0060173,GO:0060271,GO:0060429,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1904491,GO:1905515
EggNOG free text desc.protein localization to ciliary transition zone
EggNOG OGs2AP86@1,2RZG7@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionTransmembrane protein 107
Ec32 orthologEc-04_004030.1
Exons3
Model size339
Cds size339
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5673.14033.1prot_L-elsbetiae_contig5673.14033.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5673 10132..11324 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816604.0992525-CDS-L-elsbetiae_contig5673:10131..102931622816604.0992525-CDS-L-elsbetiae_contig5673:10131..10293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5673 10132..10293 +
1691683678.6537511-CDS-L-elsbetiae_contig5673:10131..102931691683678.6537511-CDS-L-elsbetiae_contig5673:10131..10293Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5673 10132..10293 +
1622816604.1107361-CDS-L-elsbetiae_contig5673:10959..110401622816604.1107361-CDS-L-elsbetiae_contig5673:10959..11040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5673 10960..11040 +
1691683678.6649914-CDS-L-elsbetiae_contig5673:10959..110401691683678.6649914-CDS-L-elsbetiae_contig5673:10959..11040Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5673 10960..11040 +
1622816604.1237192-CDS-L-elsbetiae_contig5673:11228..113241622816604.1237192-CDS-L-elsbetiae_contig5673:11228..11324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5673 11229..11324 +
1691683678.6739247-CDS-L-elsbetiae_contig5673:11228..113241691683678.6739247-CDS-L-elsbetiae_contig5673:11228..11324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5673 11229..11324 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5673.14033.1

>prot_L-elsbetiae_contig5673.14033.1 ID=prot_L-elsbetiae_contig5673.14033.1|Name=mRNA_L-elsbetiae_contig5673.14033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MRIEDRVIPARFLVTIGHLVGVALVFKTKSDNVYAGLSYDPTVAEVAAAT
SDINAALAIAMVCFGLDFVSLFFGLSIFMMKVNALQTVAHFAGAILIANF
ISEEWDYRCLWRV
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mRNA from alignment at L-elsbetiae_contig5673:10132..11324+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5673.14033.1 ID=mRNA_L-elsbetiae_contig5673.14033.1|Name=mRNA_L-elsbetiae_contig5673.14033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1193bp|location=Sequence derived from alignment at L-elsbetiae_contig5673:10132..11324+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAATCGAAGACAGGGTCATCCCTGCTAGGTTCCTCGTGACAATCGG CCATCTTGTCGGCGTGGCGTTGGTTTTCAAGACCAAGTCAGACAATGTCT ACGCTGGGCTCTCCTATGACCCGACAGTTGCCGAAGTGGCGGCGGCAACC AGCGATATCAACGTGAGCATCTCGTCTCCAAGTGTGAACGCACCCACGTA CTGTGGGTTTGGTTCAATTTCGGATGAACTGTGTTACTGAAAATCAAACA ACAGTTAATCAAAAATGGACCTGTGTTTTTCTTTCAAAGCAGGCCACTAG AGTTTGCAGCCCTAGGCGGCTTCCGCAGTTCGTACCACATCTCCGAATGG GTACCGAAACGAAATATTTGACTCAACCTCCTCTCTGAGAGCACTTACTA TGTACGATCTTGCCTAGTTTTAGACTCTGTGGTGGGTACAAAGTAGTGTG TGTGTGTGTGTGTGTGTGTGTGTGTGATTCCCTTCCATCTGTATTCGGGC GTCCGTCGTCACCCGTTTGGTGCACTTATCGGTGATTACACCTTCGGTAT GTTGCTTCATCTTTCGGTATCGTGGACAACACACCTCGGCATAGACTTGT ATGTACTACGTGATCTCATGTGCAACGAGACGCATCAGCCGGGGTCACAC ACAAGAGCGGGGACACCGGGGGGGCTTTCCTCTTCTTATTGAACAGAAGA CTAAGAAATCGACGACGAAACTTTCCCATGCAAGACGCAACCCTGAACCC TGTGATGAATATTATTGCCATATAGCTGTGCCAGTTGGCTCGAATTCACC AAGAACCTACGCTCCGTGCTGTATGCAGGCTGCATTGGCGATAGCAATGG TGTGCTTTGGGCTGGACTTTGTGTCCCTTTTCTTTGGGCTGTCCATCTTC ATGATGAAGGTGAGGCGGAACAGGGGACATCGTTTCAAGAAAAGGTCCAT CCAGCCGGTCAAACGTGGCAACATACAGCTCGGATCCATGCATATAGATA TGGACATGGAGCTCAAGAAACCCCCTACCTCGGACACGAACTTCATTGTG CCCGCCCGACGCTACTGGTCTCCATGTCTCTCGCCGTTTCACTACAGGTG AACGCACTTCAGACTGTCGCGCACTTTGCTGGCGCCATCCTCATCGCTAA CTTCATCTCCGAGGAGTGGGACTACCGGTGTCTCTGGCGAGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5673:10132..11324+

>mRNA_L-elsbetiae_contig5673.14033.1 ID=mRNA_L-elsbetiae_contig5673.14033.1|Name=mRNA_L-elsbetiae_contig5673.14033.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig5673:10132..11324+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAATCGAAGACAGGGTCATCCCTGCTAGGTTCCTCGTGACAATCGG
CCATCTTGTCGGCGTGGCGTTGGTTTTCAAGACCAAGTCAGACAATGTCT
ACGCTGGGCTCTCCTATGACCCGACAGTTGCCGAAGTGGCGGCGGCAACC
AGCGATATCAACATGAGAATCGAAGACAGGGTCATCCCTGCTAGGTTCCT
CGTGACAATCGGCCATCTTGTCGGCGTGGCGTTGGTTTTCAAGACCAAGT
CAGACAATGTCTACGCTGGGCTCTCCTATGACCCGACAGTTGCCGAAGTG
GCGGCGGCAACCAGCGATATCAACGCTGCATTGGCGATAGCAATGGTGTG
CTTTGGGCTGGACTTTGTGTCCCTTTTCTTTGGGCTGTCCATCTTCATGA
TGAAGGCTGCATTGGCGATAGCAATGGTGTGCTTTGGGCTGGACTTTGTG
TCCCTTTTCTTTGGGCTGTCCATCTTCATGATGAAGGTGAACGCACTTCA
GACTGTCGCGCACTTTGCTGGCGCCATCCTCATCGCTAACTTCATCTCCG
AGGAGTGGGACTACCGGTGTCTCTGGCGAGTGGTGAACGCACTTCAGACT
GTCGCGCACTTTGCTGGCGCCATCCTCATCGCTAACTTCATCTCCGAGGA
GTGGGACTACCGGTGTCTCTGGCGAGTG
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