mRNA_L-elsbetiae_contig5666.14019.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D8LHB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHB6_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.620e-32 Identity = 77/189 (40.74%), Postives = 111/189 (58.73%), Query Frame = 1 Query: 58 HPERFLRVGHRLTGMLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIVEEERMEMTG------AKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603 HP L+VG LTG LM S + S DG+I KA G PPR+ DG+ GP P + +T++ SDP +V + R E++ EE E T K+G +A + +MPFGK G RR +EHAK H+GEV + +++RG +E ++DGT V ++ G S+FG R KD S++L + G ++ R G L W Sbjct: 137 HPALSLKVGEVLTGTLMSPTMGSRIFASREDGAIVFAKATGEPPRDADGRVTGPTPETITTLVASDPGKVAKRSAIRAELLAEELHERTAQAEGKSGKRGALATIAGWMPFGKGGFLRRRAREHAKVHMGEVNLYVTNRGHLEGSVDGTRVARK-SGPSWFGYRTKDPSYELWVSHSGVEITRNGMLDW 324
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7FMM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMM4_ECTSI) HSP 1 Score: 105 bits (262), Expect = 1.710e-22 Identity = 63/160 (39.38%), Postives = 100/160 (62.50%), Query Frame = 1 Query: 145 IDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV------EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDS-HQLCPTRDGFKVLRRGQLLW 603 IDGS+ A G PP +++ + I PV ++ T+L+++P+R+ V R EIV E+ +E G K+ + V+ F+PFGK G R RR +E A HLGE A++++++G +E ++DG+ VL++ G S+FG RKKDS +++ T DG V R G+ W Sbjct: 319 IDGSVVHATATGTPPGDLEDRSIDPVSQTRRTLLEANPQRMSIVEGLRAEIVAETEEAEKAAVEGQGLKRSKMVTVLGFLPFGKHGFRRRRARERAAAHLGEAALSVTNKGDLEVSVDGSIVLRK-SGPSWFGFRKKDSTYEVRVTEDGVVVSRGGKYDW 477
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7FTM0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTM0_ECTSI) HSP 1 Score: 92.4 bits (228), Expect = 1.120e-19 Identity = 54/159 (33.96%), Postives = 92/159 (57.86%), Query Frame = 1 Query: 148 DGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIVEEERMEMTGA------KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603 DGS+ + G PR+ +G+ G +P+ T+L ++ R + + R EI+ ++ KK ++ M F+PFGK G RR ++ A+ HLGE + ++S+G++E ++DGT VL++ G S+FG R+ D S++L T +G +V RRG +W Sbjct: 8 DGSVVFATSTGRVPRDEEGRATGSLPQKRLTLLAANERLMAKAEDFRSEIILRRLVKKNALREGRTLKKSKMSTFMGFLPFGKRGFLHRRARDRAEAHLGEATLKLTSKGILEVSVDGTVVLRKKG-PSYFGFRRTDPSYELQVTEEGIEVSRRGDFVW 165
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G9B0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B0_ECTSI) HSP 1 Score: 97.4 bits (241), Expect = 1.160e-19 Identity = 57/146 (39.04%), Postives = 91/146 (62.33%), Query Frame = 1 Query: 187 PRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV----EEERMEMTGA--KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603 PR+ DG GPVP+ T+L ++PR++ +V R E + E++R + G ++G VA +M F+PFGK G RR +EHA+ H+GE ++I+ +G +E ++DG VL++ G S+FG R+ D S++L T +G + RRG W Sbjct: 339 PRDADGNTTGPVPQKNRTLLTANPRKMSKVRALRSENIAARLEKKRAALEGRTLRRGKVATLMGFLPFGKHGFLRRRAREHAEAHMGEATLSITKKGGLEVSVDGIVVLRK-SGPSWFGFRRTDRSYELRVTEEGVVISRRGMYDW 483
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: A0A6H5JQZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQZ9_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 5.950e-19 Identity = 61/194 (31.44%), Postives = 103/194 (53.09%), Query Frame = 1 Query: 40 PPELTAHPERFLRVGHRLTGMLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQSDPRRVMEVHRRRVEIV------EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDSHQLCPTRDGFKVLRRGQLLW 603 P H + L VG L G L + + + ID + A G PP +++ + + P ++ T+L+++ +R+ V + EI+ E+E +E G KK + V+ F+PFGK G R RR +EHA HLGE ++++++G +E ++DG+ VL + G S+FG RKKD +G ++ +G W Sbjct: 111 PDAFQFHSDFVLHVGDFLHGRLPNLAKTAMVYATSIDCFVVRATATGTPPGDLEDRTVDPASQTRRTLLEANTQRMSIVEGLQAEIMAETAEAEKETVEGRGLKKSKMVAVLGFLPFGKHGFRRRRPREHAAAHLGEATLSVTNKGDLEVSVDGSIVLGK-SGPSWFGFRKKDFTYEVRVTEGVVMVSQGGHDW 303
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G9A5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9A5_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 3.280e-15 Identity = 40/92 (43.48%), Postives = 62/92 (67.39%), Query Frame = 1 Query: 331 KKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKD-SHQLCPTRDGFKVLRRGQLLW 603 ++G VA +M F+PFGK G RR +EHA+ H+GE ++I+ +G +E ++DGT VL++ G S+FG R+ D S++L T +G + RRG W Sbjct: 29 RRGKVATLMGFLPFGKHGFLRRRAREHAEAHVGEATLSITKKGGLEVSVDGTVVLRK-SGPSWFGFRRTDRSYELRVTEEGVDISRRGMYDW 119
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Match: D7G0T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0T0_ECTSI) HSP 1 Score: 76.3 bits (186), Expect = 5.720e-14 Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 301 EEERMEMTGAKKGMVARVMSFMPFGKAGRRERRRKEHAKTHLGEVAVTISSRGVVEATMDGTTVLKEVGGRSFFGCRKKDS-HQLCPTRDGFKVLRRGQLLW 603 E+E +E G K + V+ F+PFGK G R RR +EH HLGE ++++++G +E ++DG+ VL++ S+FG R+KDS +++ T DG V R G+ W Sbjct: 8 EKEAVEGRGLTKSKMVTVLGFLPFGKHGFRRRRAREHVAAHLGEATLSVTNKGDLEVSVDGSIVLRK-SRPSWFGFRQKDSTYEVRVTEDGVAVSRGGKYDW 108 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5666.14019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig5666.14019.1 >prot_L-elsbetiae_contig5666.14019.1 ID=prot_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp MLMYEDNLSALSVSHIDGSIRLVKAAGPPPRNIDGKQIGPVPRSFSTVLQback to top mRNA from alignment at L-elsbetiae_contig5666:1427..2686- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig5666.14019.1 ID=mRNA_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1260bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:1427..2686- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig5666:1427..2686- >mRNA_L-elsbetiae_contig5666.14019.1 ID=mRNA_L-elsbetiae_contig5666.14019.1|Name=mRNA_L-elsbetiae_contig5666.14019.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig5666:1427..2686- (Laminarionema elsbetiae ELsaHSoW15)back to top |