mRNA_L-elsbetiae_contig566.14012.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig566.14012.1
Unique NamemRNA_L-elsbetiae_contig566.14012.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: A0A6H5JNS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNS0_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 5.350e-14
Identity = 48/92 (52.17%), Postives = 62/92 (67.39%), Query Frame = 1
Query:   19 ASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAVTKVLVKAGADLEAK-----TFRTGCTPLHMAAAGG-HSGMMRVLIEAG 276
            AS  G LR+VR+ L  GA V+  D+ G +ALH++ +   +HLAV+K LVKAGADLEA+         GCTPLH+AAA G H GM+ +LI AG
Sbjct:   38 ASTMGYLRVVRVLLRLGARVSAADNDGATALHLSIV--NKHLAVSKALVKAGADLEARIDHHQALGVGCTPLHVAAAKGFHKGMV-MLIHAG 126          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: A0A6H5KSL5_9PHAE (Uncharacterized protein n=2 Tax=root TaxID=1 RepID=A0A6H5KSL5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.570e-12
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1
Query:   19 ASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAVTKVLVKAGADLEAKTFRT--------GCTPLHMAAAGGHSGMMRVLIEAGANPNNRGLNGTTPFY 321
            A+ KG LRIVR+ L  GA+V+     G +ALH        +LAVTK L+KAGA++EAK            G TPLH+AA  G    M  LI AGAN ++R  +G+T  Y
Sbjct:   59 AANKGYLRIVRVLLRFGADVSVSTDDGHTALHFAIGGR--NLAVTKALIKAGAEVEAKADLVRMESEVVQGQTPLHLAAGEGFCEGMVALINAGANVDSRMSDGSTAMY 165          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: Q5D8Z6_SCHJA (Ankyrin repeat domain-containing protein isoform 1 n=2 Tax=Schistosoma japonicum TaxID=6182 RepID=Q5D8Z6_SCHJA)

HSP 1 Score: 63.5 bits (153), Expect = 3.150e-10
Identity = 36/93 (38.71%), Postives = 52/93 (55.91%), Query Frame = 1
Query:    7 GFAPASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAVTKVLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEAGANP 285
            G   AS +G +  VR  LDK  +V   D  G++ALH        H  + ++L+KAGAD+ A+T   G TP H AA GGH  ++++L+  G  P
Sbjct:   30 GIWGASARGDVTRVRELLDKHTDVNIPDKYGYTALHYGT--RNNHKGICELLIKAGADIFARTKSDGATPAHRAAYGGHLSILQLLVGKGGTP 120          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: A9V522_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V522_MONBE)

HSP 1 Score: 63.9 bits (154), Expect = 1.370e-9
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 1
Query:   19 ASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAVTKVLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEAGANPNNRGL 300
            A    +L   +  L KGA+V   DH GFS LH   + +     +  +L++AGAD  A    TG TPLH+A   G+ G++R L+E GA+PN + L
Sbjct:  175 AVKNNNLAATKDALSKGADVNLADHDGFSPLHAATLPD-----ICVLLLEAGADTGAAESSTGSTPLHVAVQLGNVGVVRALLEYGADPNAKTL 263          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: A0A6H5K1W5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1W5_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.380e-9
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   19 ASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAVTKVLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEAGANPNNRGLNGTTPFYT 324
            AS  G LR+ R+ L  GA V+  D+ G +ALH++     +HLAV+K L+KAGA++EA+     C            GM+ VLI AGAN ++   +G TP YT
Sbjct:   38 ASTMGYLRVERVLLRLGAGVSVADNDGATALHLSVF--NQHLAVSKALIKAGAEVEAR-----CV----------DGMV-VLIHAGANVDSEQESGATPLYT 121          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: A0A7X4KW37_9BACT (Uncharacterized protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7X4KW37_9BACT)

HSP 1 Score: 63.5 bits (153), Expect = 1.830e-9
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   13 APASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAVTKVLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEAGANPNNRGLNGTT 312
            A A+ +G +  VR  L +G +V      G +ALH   M     LA T  L+ AGA LEA T     TPLH+ +  G  G++R L+EAGA+P+    +G T
Sbjct:   41 ADAASRGDVEAVRSLLQRGVDVQTAQADGMTALHWAAMRSDVELAET--LIYAGAHLEATTRIGQHTPLHVGSRSGQPGVLRALLEAGADPHAATTSGAT 138          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: A0A6H5JWZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 4.030e-9
Identity = 41/85 (48.24%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   19 ASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAVTKVLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEA 273
            AS +G   IVRI L +GANV  V   GF+AL + C A+   LAV K+LV AGA+LEA T   G  P H+AA  GH+ +++ L +A
Sbjct:    3 ASQRGFTLIVRILLKEGANVLIVADLGFTAL-LAC-AQYGKLAVCKMLVNAGAELEAATSSNGSRPRHLAADIGHAAVIKALRQA 85          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: J3LRK8_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3LRK8_ORYBR)

HSP 1 Score: 62.4 bits (150), Expect = 4.260e-9
Identity = 38/93 (40.86%), Postives = 54/93 (58.06%), Query Frame = 1
Query:   10 FAPASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAVTKVLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEAGANPN 288
             A A+  G L + R  LD GA+  K D+ G   LH  C A+  H  V ++L+  GA ++   F    TPLH+AAA G +G+M+VL+E  A+PN
Sbjct:  103 LASAALDGRLSLARYLLDHGADPNKKDNAGSVPLH--CAAKNGHDEVARLLLSRGASIDIAYFHG--TPLHIAAAYGKAGVMKVLLEHHADPN 191          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: A0A2A2LXP1_9BILA (Uncharacterized protein n=1 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2LXP1_9BILA)

HSP 1 Score: 62.0 bits (149), Expect = 6.600e-9
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   70 ANVAKVDHGGFSALHVTCMAEQEHLAVTK--VLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEAGANPNNRGLNGTTPFY 321
            A +  +DH GF+  H+  M  +  LAV K  +++     ++AKT     T LHMAAAGGH+ ++++L+E GANP +   +G T  +
Sbjct:  544 AVLTAIDHNGFTCAHIAAM--KGSLAVVKELMMIDKAMVIQAKTKTMEATTLHMAAAGGHANIVKILLENGANPEDENAHGMTALH 627          
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Match: A0A2A2LHB4_9BILA (Ion_trans domain-containing protein n=2 Tax=Diploscapter pachys TaxID=2018661 RepID=A0A2A2LHB4_9BILA)

HSP 1 Score: 62.0 bits (149), Expect = 6.750e-9
Identity = 32/86 (37.21%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   70 ANVAKVDHGGFSALHVTCMAEQEHLAVTK--VLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEAGANPNNRGLNGTTPFY 321
            A +  +DH GF+  H+  M  +  LAV K  +++     ++AKT     T LHMAAAGGH+ ++++L+E GANP +   +G T  +
Sbjct: 1003 AVLTAIDHNGFTCAHIAAM--KGSLAVVKELMMIDKAMVIQAKTKTMEATTLHMAAAGGHANIVKILLENGANPEDENAHGMTALH 1086          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig566.14012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JNS0_9PHAE5.350e-1452.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSL5_9PHAE8.570e-1244.04Uncharacterized protein n=2 Tax=root TaxID=1 RepID... [more]
Q5D8Z6_SCHJA3.150e-1038.71Ankyrin repeat domain-containing protein isoform 1... [more]
A9V522_MONBE1.370e-939.36Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A6H5K1W5_9PHAE1.380e-941.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7X4KW37_9BACT1.830e-939.00Uncharacterized protein n=2 Tax=Acidobacteria bact... [more]
A0A6H5JWZ8_9PHAE4.030e-948.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
J3LRK8_ORYBR4.260e-940.86Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]
A0A2A2LXP1_9BILA6.600e-937.21Uncharacterized protein n=1 Tax=Diploscapter pachy... [more]
A0A2A2LHB4_9BILA6.750e-937.21Ion_trans domain-containing protein n=2 Tax=Diplos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig566contigL-elsbetiae_contig566:35489..35815 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.6e-12
Seed eggNOG ortholog2880.D8LSC6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size327
Cds size327
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.5765388-CDS-L-elsbetiae_contig566:35488..358151622816602.5765388-CDS-L-elsbetiae_contig566:35488..35815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 35489..35815 -
1691683677.6882808-CDS-L-elsbetiae_contig566:35488..358151691683677.6882808-CDS-L-elsbetiae_contig566:35488..35815Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 35489..35815 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig566.14012.1prot_L-elsbetiae_contig566.14012.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig566 35489..35815 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig566.14012.1

>prot_L-elsbetiae_contig566.14012.1 ID=prot_L-elsbetiae_contig566.14012.1|Name=mRNA_L-elsbetiae_contig566.14012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=109bp
MPGFAPASYKGSLRIVRIPLDKGANVAKVDHGGFSALHVTCMAEQEHLAV
TKVLVKAGADLEAKTFRTGCTPLHMAAAGGHSGMMRVLIEAGANPNNRGL
NGTTPFYT*
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mRNA from alignment at L-elsbetiae_contig566:35489..35815-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig566.14012.1 ID=mRNA_L-elsbetiae_contig566.14012.1|Name=mRNA_L-elsbetiae_contig566.14012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=327bp|location=Sequence derived from alignment at L-elsbetiae_contig566:35489..35815- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGCTTCGCACCCGCCTCCTATAAGGGGTCCTTACGCATTGTCAG GATCCCACTGGACAAGGGAGCCAACGTAGCTAAAGTTGATCATGGTGGGT TTTCTGCTTTGCACGTTACGTGTATGGCTGAACAAGAACACCTTGCCGTG ACAAAGGTGCTGGTGAAGGCCGGCGCCGACCTGGAAGCAAAGACCTTTCG CACAGGTTGCACACCGCTTCACATGGCTGCGGCAGGAGGGCACTCGGGCA TGATGAGAGTGCTGATCGAGGCAGGGGCGAACCCCAACAACCGTGGGTTG AACGGGACGACACCGTTCTACACATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig566:35489..35815-

>mRNA_L-elsbetiae_contig566.14012.1 ID=mRNA_L-elsbetiae_contig566.14012.1|Name=mRNA_L-elsbetiae_contig566.14012.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=654bp|location=Sequence derived from alignment at L-elsbetiae_contig566:35489..35815- (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGGCTTCGCACCCGCCTCCTATAAGGGGTCCTTACGCATTGTCAG
GATCCCACTGGACAAGGGAGCCAACGTAGCTAAAGTTGATCATGGTGGGT
TTTCTGCTTTGCACGTTACGTGTATGGCTGAACAAGAACACCTTGCCGTG
ACAAAGGTGCTGGTGAAGGCCGGCGCCGACCTGGAAGCAAAGACCTTTCG
CACAGGTTGCACACCGCTTCACATGGCTGCGGCAGGAGGGCACTCGGGCA
TGATGAGAGTGCTGATCGAGGCAGGGGCGAACCCCAACAACCGTGGGTTG
AACGGGACGACACCGTTCTACACATAGATGCCTGGCTTCGCACCCGCCTC
CTATAAGGGGTCCTTACGCATTGTCAGGATCCCACTGGACAAGGGAGCCA
ACGTAGCTAAAGTTGATCATGGTGGGTTTTCTGCTTTGCACGTTACGTGT
ATGGCTGAACAAGAACACCTTGCCGTGACAAAGGTGCTGGTGAAGGCCGG
CGCCGACCTGGAAGCAAAGACCTTTCGCACAGGTTGCACACCGCTTCACA
TGGCTGCGGCAGGAGGGCACTCGGGCATGATGAGAGTGCTGATCGAGGCA
GGGGCGAACCCCAACAACCGTGGGTTGAACGGGACGACACCGTTCTACAC
ATAG
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