mRNA_L-elsbetiae_contig566.14009.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig566.14009.1
Unique NamemRNA_L-elsbetiae_contig566.14009.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: D8LJF5_ECTSI (Importin subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJF5_ECTSI)

HSP 1 Score: 686 bits (1769), Expect = 1.240e-240
Identity = 454/470 (96.60%), Postives = 458/470 (97.45%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFGQPAQAGADGTFGAQPGQGGFNFG 1413
            LDQLPQLVIGVQSLDP+VQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEE VLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIH+SPAVQTPALRTVGNI      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQE+NQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAP+E EGAQQFAFGQP QAG D TFGAQP QGGFNFG
Sbjct:   88 LDQLPQLVIGVQSLDPSVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEE-VLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHTSPAVQTPALRTVGNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEINQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPLEAEGAQQFAFGQPTQAGTDTTFGAQPNQGGFNFG 556
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: A0A835Z4P4_9STRA (Importin subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4P4_9STRA)

HSP 1 Score: 506 bits (1304), Expect = 1.820e-170
Identity = 373/472 (79.03%), Postives = 399/472 (84.53%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFGQPAQAGADGTF--GAQPGQGGFNFG 1413
            L+QLPQLV G+ S DPA+ LD TTAFRK+LSIERNPPIQ VIDAGVVP+FVEFLQ+D NPALQFE+AWALTNIASGTS+HTRVVIE GAVPIFVRLL SPNDDVREQ  XXXXXXXXDSP CRD VLQ G+M PLL QLT+RSKLSMLRNATWTLSNFCRGKPQP FE VRPALP LAQLIHSVDEE VLTDACWALSYLSDG NDKIQAVIEAGVCQRLVELL+H SP+VQTPALRTVGNI      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GK EQIK+              +V DAKIVTVALEGLENILK G+T+AKAQG + N MATYI E GGM++IE LQMHDN +IYNKALK+L +YFG EDEED  +AP  T+GA  F+FGQP   GA G    G QP QG +NFG
Sbjct:   72 LEQLPQLVAGLMSADPALHLDMTTAFRKLLSIERNPPIQQVIDAGVVPRFVEFLQQDANPALQFEAAWALTNIASGTSEHTRVVIEVGAVPIFVRLLSSPNDDVREQXXXXXXXXXXDSPECRDGVLQHGSMQPLLAQLTERSKLSMLRNATWTLSNFCRGKPQPDFERVRPALPALAQLIHSVDEE-VLTDACWALSYLSDGSNDKIQAVIEAGVCQRLVELLMHQSPSVQTPALRTVGNIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGGKNEQIKFXXXXXXXXXXXXXXQVQDAKIVTVALEGLENILKVGETDAKAQGTDQNMMATYIAEAGGMDKIENLQMHDNLSIYNKALKILTKYFGAEDEEDAALAPA-TDGAT-FSFGQPPAGGAGGAAFGGNQPVQG-YNFG 539
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: A0A830HJH5_9CHLO (Importin subunit alpha n=2 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HJH5_9CHLO)

HSP 1 Score: 458 bits (1179), Expect = 2.120e-151
Identity = 303/471 (64.33%), Postives = 346/471 (73.46%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGK-PEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFGQPAQAGADGTFGAQPGQGGFNFG 1413
            L+ LP++V GV S DP VQL++T  FRK+LSIER+PPI+ VI AGVVP+ V FLQR D P LQFE+AWALTNIASGTS+HTRVVIE  AVPIFV+LL SP+DDVREQAV        DSP CRDLVL  GA+ PLL QL + +K+SMLRNATWTLSNFCRGKPQP+FE  RPALP LA+LIHS DEE VLTDACWALSYLSDG NDKIQAVI+AGV +RLVELL+H+S AV  PALRTVGNIVTGDD+                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXXXXXXXXX   PEQIK+LV+ GCI PL DLL   D +IVTVALEGLENIL+ G+ + +A   + N     I + GG++ IEQLQ H NN+IY+K +KLLE Y G+E+EED  +AP   EGA Q+ FG PA AGA    G+ P  GGFNFG
Sbjct:   85 LESLPEMVQGVCSEDPKVQLESTMQFRKLLSIERSPPIEAVIKAGVVPRLVAFLQRVDLPQLQFEAAWALTNIASGTSEHTRVVIEYNAVPIFVQLLQSPSDDVREQAVWALGNIAGDSPKCRDLVLGHGALFPLLSQLNEHAKISMLRNATWTLSNFCRGKPQPNFEQARPALPALAKLIHSTDEE-VLTDACWALSYLSDGTNDKIQAVIDAGVARRLVELLLHNSAAVLIPALRTVGNIVTGDDVQTQIVINCQALPCLLNLLQQGHKKSIKKEACWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAEFDXXXXXXXXXXXXXXXXTPEQIKFLVSSGCIKPLCDLLTCGDNRIVTVALEGLENILRIGEEDKRAGIMDQNPFVQEIDQVGGLDLIEQLQNHPNNDIYDKCVKLLETYIGLEEEEDQNLAPSMDEGANQYTFGAPAAAGAP-VMGSMP-AGGFNFG 552
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: A0A7S2P4N2_9STRA (Importin subunit alpha n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P4N2_9STRA)

HSP 1 Score: 444 bits (1143), Expect = 3.040e-146
Identity = 334/459 (72.77%), Postives = 360/459 (78.43%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFGQPAQAGADGTFG 1380
            L+ LPQ+V GV   DPA Q + TTAFR++LSIE+NPPIQ VID+GVVP+FVEFLQRDDNPALQFE+AWALTNIASGTS+HT VV+E GAVPIF RLLMSPNDDVREQAV        DSP CRDLVL   AM PLLQQL   SKLSMLRNATWTLSNFCRGKPQP+FE VRPALPTLAQLI S DEE VLTDACWALSYLSDG N+KIQAVIEAGVC+RLVE                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG   QIK+LV +GCI PL DLL V+DAKIV VALEGLENILK G+ +AK  G   NQMATYI E  G+ +IE LQ HDNN+IY K +K+LE YFGVEDEED  +AP   EG Q +AFG     G    FG
Sbjct:   81 LENLPQMVNGVMGNDPAQQTECTTAFRRLLSIEKNPPIQQVIDSGVVPRFVEFLQRDDNPALQFEAAWALTNIASGTSEHTGVVMEMGAVPIFCRLLMSPNDDVREQAVWALGNIAGDSPPCRDLVLNADAMLPLLQQLHQNSKLSMLRNATWTLSNFCRGKPQPNFEMVRPALPTLAQLIFSPDEE-VLTDACWALSYLSDGPNEKIQAVIEAGVCRRLVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGNTTQIKFLVQQGCIRPLCDLLTVNDAKIVHVALEGLENILKVGEADAKVSGTH-NQMATYIAEAEGLNKIENLQQHDNNDIYEKCIKILETYFGVEDEEDPDLAPQMGEGGQSYAFGAGQMQGQQFDFG 537
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: C1MLU3_MICPC (Importin subunit alpha n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MLU3_MICPC)

HSP 1 Score: 438 bits (1126), Expect = 7.880e-144
Identity = 301/471 (63.91%), Postives = 344/471 (73.04%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKP-EQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFG-QPAQAGADGTFGAQPGQGGFNF 1410
            L+ LP +  GV+S DPA QL+ TT FRK+LSIER PPI+ VI AGVVP FVEFL+R++ P LQFE+AWALTNIASGTS++T VVI+ GAVPIFV LL SP+DDVREQAVXXXXXXX DSP CRD+VL   A+GPLL+QL + SKL+MLRNATWTLSNFCRGKPQP F+ +R ALP LA+L+HS DEE VLTDACWALSYLSDG NDKIQAVIEAGVC+RLVELL   +P+V  PALRTVGNIVTGDD                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXX    +QIKYLV +G I PL DL+   DA+IVTVALEGLENILK G+   K +G   NQ A +I E  G+E+IE LQ H+NN+IY+KA+K+LE YFG+EDEED  +AP     A QFAF  QPA             QGGF+F
Sbjct:   72 LEMLPTMCEGVRSQDPAAQLEATTQFRKLLSIERAPPIEEVIRAGVVPYFVEFLKREEFPQLQFEAAWALTNIASGTSENTGVVIDSGAVPIFVALLRSPSDDVREQAVXXXXXXXGDSPKCRDMVLSTNALGPLLEQLNEHSKLTMLRNATWTLSNFCRGKPQPQFDQLRDALPALARLVHSSDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCRRLVELLGRPTPSVLIPALRTVGNIVTGDDYQTQIIINCRALPSLLALLTTDHKKSIKKEACWXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQHAEFDXXXXXXXXXXXXXXXXTHQQIKYLVEQGAIKPLCDLIVCSDARIVTVALEGLENILKVGEA-MKTEGSP-NQFAQFIDEADGLEKIENLQNHNNNDIYDKAMKILEEYFGLEDEEDQNLAPAADANAAQFAFNPQPAAP-----------QGGFDF 528
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: A0A7S0X4A9_9CHLO (Importin subunit alpha n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X4A9_9CHLO)

HSP 1 Score: 434 bits (1117), Expect = 1.770e-142
Identity = 289/471 (61.36%), Postives = 334/471 (70.91%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFGQPAQAGADGTFGAQPGQGGFNFG 1413
            L+ LPQ+V GV++ DP VQL+ TT FRK+LSIER PPI+ VI AGVVP FV FL+R++ P LQFE+AWALTNIASGTS++T VVI+ GAVPIFV LL SP+DDVREQAV        DSP CRD+VL Q A+ PLL+QL + SKL+MLRNATWTLSNFCRGKPQP F+ +R ALP LA+L+HS DEE VLTDACWALSYLSDG NDKIQAVIEAGVC+RLVELL    P+V  PALRTVGNIVTGDD                                 XXXXXXXXXXXXXXXXXXXXXXXXXX         XXXXXXXXXXXXXX G  +Q+KYLV +GCI PL DL+   DA+IVTVALEGLENILK G+ + K +G   NQ A +I E  G+E+I   Q H+NN+IY+KA+K+LE YFG+EDEED  +AP     A QFAF                 QGGF+FG
Sbjct:   71 LESLPQMVQGVKTDDPRVQLEATTQFRKLLSIERAPPIEEVIKAGVVPYFVAFLKREEFPQLQFEAAWALTNIASGTSENTGVVIDSGAVPIFVTLLRSPSDDVREQAVWALGNIAGDSPKCRDMVLAQNALHPLLEQLNEHSKLTMLRNATWTLSNFCRGKPQPQFDQLRDALPALARLVHSNDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCRRLVELLGSKHPSVLIPALRTVGNIVTGDDYQTQIIINCRALPSLLALLTAEHKKSIKKEACWXXXXXXXXXXXXXXXXXXXXXXXXXXYLLANAEFDXXXXXXXXXXXXXXXGTHQQLKYLVDQGCIKPLCDLIVCSDARIVTVALEGLENILKVGEVD-KVEGSP-NQYAQFIDEAEGLEKIXXXQNHNNNDIYDKAMKILEEYFGLEDEEDQNLAPAMDANANQFAFQAAPMVP----------QGGFDFG 528
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: A0A7S0D3V3_MICPS (Importin subunit alpha n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D3V3_MICPS)

HSP 1 Score: 431 bits (1107), Expect = 5.610e-141
Identity = 292/471 (62.00%), Postives = 335/471 (71.13%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFGQPAQAGADGTFGAQPGQGGFNFG 1413
            L+ LPQ+V GVQS +  +QL+ TT FRK+LSIER PPI+ VI AGVVP FVEFL+R++ P LQFE+AWALTNIASGTS++T VVI+ GAVPIFV+LL SP+DDVREQAV        DSP CRD+VL   ++ PLLQQL   SKL+MLRNATWTLSNFCRGKPQP F+ +R ALP LA+L+HS DEE VLTDACWALSYLSDG NDKIQAVIEAGVC+RLVELL     +V  PALRTVGNIVTGDD                                 XXXXXXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXX G  EQI YLV +G I PL DL+   DA+IVTVALEGLENILK G+   +A G   NQ A +I E  G+E+IE LQ H+NN+IY+KA+K++E YFG+EDEED  +AP     A QFAF QPA              GGF+FG
Sbjct:   73 LESLPQMVQGVQSDNAQMQLEATTQFRKLLSIERAPPIEEVIRAGVVPYFVEFLKREEFPQLQFEAAWALTNIASGTSENTGVVIDSGAVPIFVQLLRSPSDDVREQAVWALGNIAGDSPKCRDMVLATNSLIPLLQQLNAESKLTMLRNATWTLSNFCRGKPQPQFDQLRDALPVLARLVHSNDEE-VLTDACWALSYLSDGTNDKIQAVIEAGVCRRLVELLSSKHASVLIPALRTVGNIVTGDDYQTQIIINCQALPSLLALLTGDHKKSIKKEACWXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAHAEFDXXXXXXXXXXXXXXXGTHEQISYLVAQGAIKPLCDLIVCSDARIVTVALEGLENILKVGEA-LRADGAP-NQYAQFIDEAEGLEKIENLQNHNNNDIYDKAVKIMEEYFGLEDEEDQNLAPALDASANQFAFNQPAAP-----------TGGFDFG 529
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: A0A7S0CK65_9STRA (Importin subunit alpha n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CK65_9STRA)

HSP 1 Score: 431 bits (1108), Expect = 5.650e-141
Identity = 331/462 (71.65%), Postives = 363/462 (78.57%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDN-GIAPVETEGAQQFAFGQPAQAGADGTFGAQ 1386
            L+ LPQ+V GV + D   Q + TT FR++LSIE+NPPIQ VIDAGVVP+FVEFLQRDDNPALQFE+AWALTNIASGTS+HT VV+E GAVPIF RLL+SPNDDVREQA XXXXXXX DSP CRDLVL  GAM PLLQQL   SKLSMLRNATWTLSNFCRGKPQP F  VRPALPTLAQLI S DEE VLTDACWALSYLSDG N+KIQAVIEAGVC+RLVE                          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    G  EQIK+LV +GCI PL DLL V D KIVT+ALEGLENILK G+ ++++   E NQMAT+I E  G+ +IEQLQ HDNN+IY K +K+LE YFGVEDEE+  G+AP   E  + FAFG  A +G    F  Q
Sbjct:   85 LENLPQMVQGVMTDDAQQQTECTTQFRRLLSIEKNPPIQQVIDAGVVPRFVEFLQRDDNPALQFEAAWALTNIASGTSEHTAVVMESGAVPIFCRLLLSPNDDVREQAXXXXXXXXGDSPPCRDLVLMAGAMQPLLQQLHQNSKLSMLRNATWTLSNFCRGKPQPDFNMVRPALPTLAQLIFSPDEE-VLTDACWALSYLSDGPNEKIQAVIEAGVCRRLVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATSGGNAEQIKFLVQQGCIRPLCDLLTVADTKIVTIALEGLENILKVGENDSQSSN-EHNQMATFIAEADGLTKIEQLQQHDNNDIYEKCVKILETYFGVEDEEEMPGLAPATAESGETFAFG--ADSGQQFDFSGQ 542
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: A0A8K1FCP4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FCP4_PYTOL)

HSP 1 Score: 430 bits (1105), Expect = 1.200e-140
Identity = 298/447 (66.67%), Postives = 341/447 (76.29%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFG 1344
            L +LP +V GV + +  VQLD  T FRK+LSIERNPPI+ VI  GVVP FV+FLQRDD P LQFE+AWALTNIASGTSD T VVI  GAVPIFV+LL+S NDDVREQAV        DS  CRD+VL+ GA+ PLL QLT+ +K +MLRNATWTLSNFCRG+PQP FE V+PALPTL QLI++ DEE VLTDACWALSYLSDG N+KIQAVIEAGVC+R+VELL+H SP+VQTPALRT+GNIVTGDDL                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG  EQI YLV +GCI PL DLL   DAK+V VALEGLEN+L+ G+ + K  G E N MAT + E  G+ +I+ LQ H N +IY K+LK++E YF  E+E +  +AP     AQQF FG
Sbjct:   77 LSELPLMVQGVHATEREVQLDAVTKFRKLLSIERNPPIKEVISTGVVPIFVQFLQRDDFPELQFEAAWALTNIASGTSDDTAVVINHGAVPIFVKLLLSTNDDVREQAVWALGNIAGDSVECRDMVLRCGALRPLLGQLTENAKPTMLRNATWTLSNFCRGRPQPQFELVQPALPTLGQLIYTNDEE-VLTDACWALSYLSDGTNEKIQAVIEAGVCRRIVELLMHHSPSVQTPALRTIGNIVTGDDLQTQVIINLQALPCLRALLDSPKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAEQIMYLVEQGCIKPLCDLLAASDAKVVIVALEGLENVLRVGEGQ-KGVG-EFNPMATLVDEAEGVPKIQALQFHANEDIYQKSLKIVETYFQGEEEVEQPLAPTVDASAQQFTFG 520
[Close]
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Match: A0A0K9QDA5_SPIOL (Importin subunit alpha n=4 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9QDA5_SPIOL)

HSP 1 Score: 427 bits (1098), Expect = 1.140e-139
Identity = 270/435 (62.07%), Postives = 310/435 (71.26%), Query Frame = 1 
Query:    4 LDQLPQLVIGVQSLDPAVQLDTTTAFRKILSIERNPPIQNVIDAGVVPKFVEFLQRDDNPALQFESAWALTNIASGTSDHTRVVIEKGAVPIFVRLLMSPNDDVREQAVXXXXXXXXDSPVCRDLVLQQGAMGPLLQQLTDRSKLSMLRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWALSYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GKPEQIKYLVTEGCIPPLSDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQ-EMNQMATYIMECGGMERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGI 1302
            L+ LP +V GV S +  +QL+ TT FRK+LSIER+PPI+ VI AGVVP+FVEFLQR+D P LQFE+AWALTNIASGTS++T+VVI+ GAVPIFV+LL SP+DDVREQAV        DSP CRDLVL  GA+ PLL QL + SKLSMLRNATWTLSNFCRGKPQP FE V+PALP L +L+HS DEE VLTDACWALSYLSDG NDKIQAVIEAGVC RLVELL+H SP+V  PALRTVGNIVTGDD                                  XXXXXXXXXXXXXXXXX                  XXXXXXXXXXXXX G PEQIKYLV +GCI PL DLL   D +I+TV LEGLENILK G+TE  +    ++N  A  I E  G+E+IE LQ HDNN IY KA+K+LE Y+ +E+EE+  +
Sbjct:   72 LESLPNMVAGVCSDNNQLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLQREDYPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSSGALIPLLAQLNEHSKLSMLRNATWTLSNFCRGKPQPPFEQVKPALPALERLVHSNDEE-VLTDACWALSYLSDGPNDKIQAVIEAGVCPRLVELLMHPSPSVLIPALRTVGNIVTGDDSQTQFIINNGALPCLLNLLTLNHKKSIKKEACWTXXXXXXXXXXXXXXXXXADLVGPLVNLLQTAEFDIXXXXXXXXXXXXXXGAPEQIKYLVNQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGETEKNSGTTGDVNYYAQMIDEAEGLEKIENLQSHDNNEIYEKAVKILETYW-LEEEEETAV 504
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig566.14009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJF5_ECTSI1.240e-24096.60Importin subunit alpha n=2 Tax=Ectocarpus TaxID=28... [more]
A0A835Z4P4_9STRA1.820e-17079.03Importin subunit alpha n=1 Tax=Tribonema minus Tax... [more]
A0A830HJH5_9CHLO2.120e-15164.33Importin subunit alpha n=2 Tax=Pycnococcus provaso... [more]
A0A7S2P4N2_9STRA3.040e-14672.77Importin subunit alpha n=1 Tax=Leptocylindrus dani... [more]
C1MLU3_MICPC7.880e-14463.91Importin subunit alpha n=1 Tax=Micromonas pusilla ... [more]
A0A7S0X4A9_9CHLO1.770e-14261.36Importin subunit alpha n=1 Tax=Mantoniella antarct... [more]
A0A7S0D3V3_MICPS5.610e-14162.00Importin subunit alpha n=1 Tax=Micromonas pusilla ... [more]
A0A7S0CK65_9STRA5.650e-14171.65Importin subunit alpha n=1 Tax=Proboscia inermis T... [more]
A0A8K1FCP4_PYTOL1.200e-14066.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0K9QDA5_SPIOL1.140e-13962.07Importin subunit alpha n=4 Tax=Chenopodiaceae TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig566contigL-elsbetiae_contig566:16870..20716 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score501.9
Seed ortholog evalue2.6e-139
Seed eggNOG ortholog2880.D8LJF5
Preferred nameKPNA6
KEGG koko:K15042,ko:K15043
KEGG Pathwayko05164,map05164
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000166,GO:0000737,GO:0001882,GO:0001883,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005525,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005730,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0005911,GO:0006139,GO:0006259,GO:0006308,GO:0006309,GO:0006355,GO:0006357,GO:0006605,GO:0006606,GO:0006607,GO:0006612,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0006921,GO:0006950,GO:0006952,GO:0007154,GO:0007165,GO:0007267,GO:0007276,GO:0007283,GO:0007565,GO:0008104,GO:0008139,GO:0008150,GO:0008152,GO:0008219,GO:0008565,GO:0009056,GO:0009057,GO:0009506,GO:0009605,GO:0009607,GO:0009608,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0012501,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0017038,GO:0017076,GO:0019001,GO:0019048,GO:0019054,GO:0019058,GO:0019219,GO:0019222,GO:0019439,GO:0019953,GO:0022411,GO:0022414,GO:0023052,GO:0030054,GO:0030262,GO:0030312,GO:0030425,GO:0030581,GO:0031144,GO:0031224,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031503,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032504,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0034399,GO:0034504,GO:0034613,GO:0034629,GO:0034641,GO:0034655,GO:0035639,GO:0035821,GO:0036094,GO:0036477,GO:0042277,GO:0042886,GO:0042995,GO:0043005,GO:0043167,GO:0043168,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044003,GO:0044068,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044706,GO:0044766,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046700,GO:0046794,GO:0046907,GO:0048232,GO:0048518,GO:0048522,GO:0048609,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051179,GO:0051233,GO:0051234,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051701,GO:0051704,GO:0051707,GO:0051708,GO:0051716,GO:0051817,GO:0055044,GO:0060135,GO:0060255,GO:0061608,GO:0065007,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072657,GO:0072686,GO:0075733,GO:0080034,GO:0080090,GO:0090150,GO:0090304,GO:0090305,GO:0097159,GO:0097194,GO:0097367,GO:0097447,GO:0097458,GO:0098926,GO:0099527,GO:0099536,GO:0120025,GO:0120038,GO:0140104,GO:0140142,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902579,GO:1902581,GO:1902583,GO:1902680,GO:1903506,GO:1903508,GO:1990023,GO:2000112,GO:2001141
EggNOG free text desc.nuclear import signal receptor activity
EggNOG OGsCOG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-06_010020.1
Exons7
Model size1968
Cds size1122
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.2433863-UTR-L-elsbetiae_contig566:16869..174211622816602.2433863-UTR-L-elsbetiae_contig566:16869..17421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig566 16870..17421 -
1691683677.4515789-UTR-L-elsbetiae_contig566:16869..174211691683677.4515789-UTR-L-elsbetiae_contig566:16869..17421Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig566 16870..17421 -
1622816602.3202066-UTR-L-elsbetiae_contig566:20140..203341622816602.3202066-UTR-L-elsbetiae_contig566:20140..20334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig566 20141..20334 -
1691683677.5292664-UTR-L-elsbetiae_contig566:20140..203341691683677.5292664-UTR-L-elsbetiae_contig566:20140..20334Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig566 20141..20334 -
1622816602.3301642-UTR-L-elsbetiae_contig566:20616..207161622816602.3301642-UTR-L-elsbetiae_contig566:20616..20716Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig566 20617..20716 -
1691683677.5387278-UTR-L-elsbetiae_contig566:20616..207161691683677.5387278-UTR-L-elsbetiae_contig566:20616..20716Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig566 20617..20716 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816602.257085-CDS-L-elsbetiae_contig566:17421..177211622816602.257085-CDS-L-elsbetiae_contig566:17421..17721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 17422..17721 -
1691683677.464731-CDS-L-elsbetiae_contig566:17421..177211691683677.464731-CDS-L-elsbetiae_contig566:17421..17721Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 17422..17721 -
1622816602.2670686-CDS-L-elsbetiae_contig566:18051..182131622816602.2670686-CDS-L-elsbetiae_contig566:18051..18213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 18052..18213 -
1691683677.4736552-CDS-L-elsbetiae_contig566:18051..182131691683677.4736552-CDS-L-elsbetiae_contig566:18051..18213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 18052..18213 -
1622816602.2784467-CDS-L-elsbetiae_contig566:18585..187831622816602.2784467-CDS-L-elsbetiae_contig566:18585..18783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 18586..18783 -
1691683677.4826176-CDS-L-elsbetiae_contig566:18585..187831691683677.4826176-CDS-L-elsbetiae_contig566:18585..18783Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 18586..18783 -
1622816602.2885644-CDS-L-elsbetiae_contig566:18958..191501622816602.2885644-CDS-L-elsbetiae_contig566:18958..19150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 18959..19150 -
1691683677.4916472-CDS-L-elsbetiae_contig566:18958..191501691683677.4916472-CDS-L-elsbetiae_contig566:18958..19150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 18959..19150 -
1622816602.2985244-CDS-L-elsbetiae_contig566:19588..198251622816602.2985244-CDS-L-elsbetiae_contig566:19588..19825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 19589..19825 -
1691683677.5023472-CDS-L-elsbetiae_contig566:19588..198251691683677.5023472-CDS-L-elsbetiae_contig566:19588..19825Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 19589..19825 -
1622816602.3097026-CDS-L-elsbetiae_contig566:20107..201401622816602.3097026-CDS-L-elsbetiae_contig566:20107..20140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 20108..20140 -
1691683677.5185935-CDS-L-elsbetiae_contig566:20107..201401691683677.5185935-CDS-L-elsbetiae_contig566:20107..20140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig566 20108..20140 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig566.14009.1prot_L-elsbetiae_contig566.14009.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig566 17422..20140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig566.14009.1

>prot_L-elsbetiae_contig566.14009.1 ID=prot_L-elsbetiae_contig566.14009.1|Name=mRNA_L-elsbetiae_contig566.14009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=374bp
MSPNDDVREQAVWALGNIAGDSPVCRDLVLQQGAMGPLLQQLTDRSKLSM
LRNATWTLSNFCRGKPQPSFEHVRPALPTLAQLIHSVDEEQVLTDACWAL
SYLSDGQNDKIQAVIEAGVCQRLVELLIHSSPAVQTPALRTVGNIVTGDD
LQTQVIINFNALPWLLNLLSSSKKGIRKEACWTISNITAGNKEQIQAVIE
ANIIPPLIQLLSNAEFDIRKEAAWAISNATSGGKPEQIKYLVTEGCIPPL
SDLLEVHDAKIVTVALEGLENILKTGDTEAKAQGQEMNQMATYIMECGGM
ERIEQLQMHDNNNIYNKALKLLERYFGVEDEEDNGIAPVETEGAQQFAFG
QPAQAGADGTFGAQPGQGGFNFG*
back to top

mRNA from alignment at L-elsbetiae_contig566:16870..20716-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig566.14009.1 ID=mRNA_L-elsbetiae_contig566.14009.1|Name=mRNA_L-elsbetiae_contig566.14009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3847bp|location=Sequence derived from alignment at L-elsbetiae_contig566:16870..20716- (Laminarionema elsbetiae ELsaHSoW15)
CAGCTGGACCAATTGCCGCAACTAGTGATCGGCGTACAGAGCTTGGATCC
GGCTGTCCAACTCGACACAACGACCGCTTTCCGAAAAATCCTGTCGATAG
GTGAGTCAACACCGTACAAACGATTGATTGCTTCCACTTGTTTTAGCTAT
GTGATGTTTGTCCCCTTGAGTGCTGCACTGTGTTCTATGCCGCCGCCGGA
TGTTAAAAATGTTCCTGTTGTTGGAACCGCAGTGAACCCGGCCGAATGCT
GTCGCTAGATACTCCGAAGACGATTCGAAGGCAGGAGTACTCAATGCACA
AAGATACTTGACCCTCCTATTTCTTTGTCTCTTGACCTTTTTCGCGGACC
TTCACGGCGCGATGTTGTTGTTGTTGTCTCAGAGCGCAACCCGCCTATCC
AAAACGTGATTGACGCCGGCGTGGTGCCTAAGTTCGTGGAGTTCCTCCAG
CGGGACGACAACCCGGCCCTGCAGTTCGAGTCGGCATGGGCTCTCACCAA
TATCGCCAGCGGCACGAGCGACCACACGCGAGTGGTGATTGAGAAGGGCG
CCGTTCCGATCTTCGTGCGTCTGCTCATGAGCCCTAACGACGACGTCCGC
GAGCAAGCGGTGAGTGTAGTCAATGTATTCGATTGGTTCCCATCCAATTT
TGGGAGCGTTCAATTGTTCAGTTTGTAGCGACTTCCTTCAGGTGTGGGTA
AGAGCTGAACTAAAAGAGCACTGTTTCTTCTGTTGCATTCACCTCGTCCA
CAAAGCGTCTCATTCCCATCTTTCTCTCTCTTTTCTCCTTTTCTCCTTTT
CTCCCTCTTCTCACGCACGCGTAACCGGCCTTCCATTGGCGCCCTGCTTC
ATGCCTGCCTCTCCCACGAACCCCCAACTTGGGCATGACAGGTGTGGGCG
TTGGGTAACATTGCAGGCGACTCCCCAGTGTGCCGCGATCTGGTTCTCCA
GCAGGGGGCGATGGGTCCTCTTCTCCAGCAGCTGACGGACCGATCCAAGC
TGTCGATGCTCCGAAACGCAACGTGGACGCTGTCCAACTTTTGCCGCGGA
AAGCCGCAGCCCAGCTTCGAGCACGTCCGCCCGGCCCTACCCACCCTGGC
GCAGCTGATTCACTCGGTCGACGAGGAGGTGTGTGGCTTGTGTTCTCCGT
CCCAACGCTGAAGCGCGGGTTTTGGGGTGTTTAATCGCCCAAAATCAGAC
AAAATTTGGACGGAAAGAAGGGGGTTAGTATGCCTACAACAGTTCCCTCT
GGAACGACTTTTTCACAGACTGGACGTAGGCTGCTGACATTTGTATGCAT
TAATTAAAATAAACTTGCCCATGTGTAGCACGGAGTAGAACAAATGTCAG
CAGCTACGCCCGCAGAATGATTTGAGCGCAGGCAAAGCGTCTCGTGTATC
GAAGGCAGACATGAAAAGAAAGGGCTCAGAGCACCACTGGCGTCGGCGGG
ATAAATAATATTCCGCCTTTTGACCATTGTGGCCACTGCCCTTGGCTTAA
CCGACTATACCTTTTTTTGCCGTGTCTCTTTGATTCACGTCCTCCCTCAC
TGGTGCCCAACACGAGCAGGTCCTGACAGACGCGTGCTGGGCCTTGAGCT
ACCTTTCAGACGGACAGAACGACAAGATCCAGGCAGTCATCGAAGCAGGC
GTGTGCCAGCGCCTCGTGGAGCTGCTGATCCACTCCTCTCCCGCCGTACA
GACGCCGGCCCTTCGCACCGTCGGTAACATCGTTACCGGCGACGACCTTC
AGACGCAGGTCAGTACTAGAGATGATAGCAGGGGACGGACAGGAGACTCG
GGAAATATCCCCCGCGATAGTGGGTCGGCAGCGGCGCTGCGTTATTTTTG
GGTGCGCTTTTCGTTCGGGAAGCCAAGGCAACAGCAGAAATATGTACAAC
CGCTGACTGCATCGGCCTTTTATGTACCCTCAGGTGATCATCAACTTCAA
CGCGCTGCCGTGGCTGCTAAACCTGCTTAGCTCCTCCAAGAAGGGCATCC
GCAAGGAGGCCTGCTGGACCATCTCCAACATCACTGCCGGCAACAAGGAG
CAAATTCAGGCCGTGATCGAGGCGAACATCATCCCCCCGCTTATCCAGCT
TCTGTCCAACGCAGAATTCGACATTCGCAAGGTGCGTGGGAGGGGGGCTG
GAGATCATACATTAGTGTTGAAATAAATGAACGAGGCTGTCCGTAGGTTC
TGTGCTCTCTACGGTTGCTTGTTGTTTGTTCGTCCTGTATCACGCACAGG
TATTCGCTTCCCTCGTTGATCATGCACACCATACTTGGGGAGTATCCTGT
GTGTCACGTGACTCCCCACTTTTCCTTAAAGTTGACTTCGATAAAGCCTG
GTCTTTCACCTGATTGGTGGGAATCTTTGTGCACAAAACAGACTTACGGT
TCATCTGGCAGGTCATGTGTGTTTTGTTGGCGCCAACGCCTGCGGTTGCA
ACATGCATTGATTCCCCTGGCGAATCCTCTCGCGCTTTCCTCGCCCGTTC
TAGGAAGCTGCGTGGGCAATCTCGAACGCCACCAGCGGCGGCAAGCCTGA
GCAGATCAAGTACCTCGTGACGGAGGGTTGCATCCCGCCCCTGTCGGACT
TGCTAGAAGTGCACGACGCAAAGATTGTTACCGTGGCCCTGGAAGGTCTC
GAGAACATTCTCAAGGTATGTTTTGCGCCGGCCCGGCCCGACAAGCCTTT
TTTTTTTACGGCTTCCTGTCTGCCTGCTAATCTAGAGGTGGATAAACTAC
CCGCCAATTGTCTCCCAACTTACTATCTTAATTGATGAGCGTTGCTGTTG
CCTCCGTTTCGTAGAGTTATCCGGGATCGTCGTGGCTTGCTAGCTAACTA
GGTGTTTGAACATACATTCCGTGCAGAAGTGAACCTGAATGTAAATCGAA
CTTCCGAGATTATCGTCCCGACGTCACCACAAAATTGTCTATTTGTCAAA
ACTTGTTGCATCCACTGTTTTGTTGATTGTTTCCATTTATCGCAGACCGG
CGACACCGAGGCGAAGGCACAAGGCCAGGAGATGAACCAGATGGCCACGT
ACATCATGGAGTGCGGAGGAATGGAGCGCATCGAACAGCTCCAGATGCAC
GACAACAACAACATATACAACAAGGCCCTGAAGCTGCTGGAGAGGTATTT
CGGCGTAGAGGACGAGGAGGACAACGGTATCGCGCCCGTCGAGACAGAGG
GGGCCCAACAATTCGCTTTCGGGCAGCCGGCGCAAGCGGGGGCCGACGGC
ACCTTCGGCGCCCAACCCGGTCAGGGCGGATTCAACTTCGGATGAGCAAG
CGCATGACGTGGCGGCCACGGCCGCGCCCCCCCCCCAAGGTAATTATTTT
CTGGTGGCATCGCGGCAAAAAGGAACGGCCAAGGCTGTGACGTGGGGGTG
TTGTTGTGCCGGTAAAATCGCTCCACTGGCTGCGCACATGAGCTTTGTGA
GGGTGTCGATCAGTTAGCCGCAACTTGAAGAATAGATTGTGTAGGGGTGT
GCCAAAAATTGGACTTCCCCTTGTTTTTTACATCGGCGTCGCCAATTCAA
GTTTTGAGACCGATTAGCAGTTGAGTTAGTCATGAACATGCTTTGTGTTT
CTGTCTTTCATTTTTTGTTTGTTTTTTGTAAGTTGGCGTGGTAGGATCTC
CTTTTTACTGTGTTTTGTTTAGGTCGCCGTTGTCTGATGCCCCCAATACA
CCCCCCCACCCCGCGCTCCCGCCCCTGTGTCGACCCACCCACGCCACCCC
TCCCCTGTGCTGTAGGCCGGCAGCCGTGTTGCGCAGCTCGAACAGAGGCA
GGCACCCCCCCATGCCCCTCTCCCTTCCCTGCCCCCCTTGGCCAAGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig566:16870..20716-

>mRNA_L-elsbetiae_contig566.14009.1 ID=mRNA_L-elsbetiae_contig566.14009.1|Name=mRNA_L-elsbetiae_contig566.14009.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2244bp|location=Sequence derived from alignment at L-elsbetiae_contig566:16870..20716- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCCCTAACGACGACGTCCGCGAGCAAGCGATGAGCCCTAACGACGA
CGTCCGCGAGCAAGCGGTGTGGGCGTTGGGTAACATTGCAGGCGACTCCC
CAGTGTGCCGCGATCTGGTTCTCCAGCAGGGGGCGATGGGTCCTCTTCTC
CAGCAGCTGACGGACCGATCCAAGCTGTCGATGCTCCGAAACGCAACGTG
GACGCTGTCCAACTTTTGCCGCGGAAAGCCGCAGCCCAGCTTCGAGCACG
TCCGCCCGGCCCTACCCACCCTGGCGCAGCTGATTCACTCGGTCGACGAG
GAGGTGTGGGCGTTGGGTAACATTGCAGGCGACTCCCCAGTGTGCCGCGA
TCTGGTTCTCCAGCAGGGGGCGATGGGTCCTCTTCTCCAGCAGCTGACGG
ACCGATCCAAGCTGTCGATGCTCCGAAACGCAACGTGGACGCTGTCCAAC
TTTTGCCGCGGAAAGCCGCAGCCCAGCTTCGAGCACGTCCGCCCGGCCCT
ACCCACCCTGGCGCAGCTGATTCACTCGGTCGACGAGGAGCAGGTCCTGA
CAGACGCGTGCTGGGCCTTGAGCTACCTTTCAGACGGACAGAACGACAAG
ATCCAGGCAGTCATCGAAGCAGGCGTGTGCCAGCGCCTCGTGGAGCTGCT
GATCCACTCCTCTCCCGCCGTACAGACGCCGGCCCTTCGCACCGTCGGTA
ACATCGTTACCGGCGACGACCTTCAGACGCAGCAGGTCCTGACAGACGCG
TGCTGGGCCTTGAGCTACCTTTCAGACGGACAGAACGACAAGATCCAGGC
AGTCATCGAAGCAGGCGTGTGCCAGCGCCTCGTGGAGCTGCTGATCCACT
CCTCTCCCGCCGTACAGACGCCGGCCCTTCGCACCGTCGGTAACATCGTT
ACCGGCGACGACCTTCAGACGCAGGTGATCATCAACTTCAACGCGCTGCC
GTGGCTGCTAAACCTGCTTAGCTCCTCCAAGAAGGGCATCCGCAAGGAGG
CCTGCTGGACCATCTCCAACATCACTGCCGGCAACAAGGAGCAAATTCAG
GCCGTGATCGAGGCGAACATCATCCCCCCGCTTATCCAGCTTCTGTCCAA
CGCAGAATTCGACATTCGCAAGGTGATCATCAACTTCAACGCGCTGCCGT
GGCTGCTAAACCTGCTTAGCTCCTCCAAGAAGGGCATCCGCAAGGAGGCC
TGCTGGACCATCTCCAACATCACTGCCGGCAACAAGGAGCAAATTCAGGC
CGTGATCGAGGCGAACATCATCCCCCCGCTTATCCAGCTTCTGTCCAACG
CAGAATTCGACATTCGCAAGGAAGCTGCGTGGGCAATCTCGAACGCCACC
AGCGGCGGCAAGCCTGAGCAGATCAAGTACCTCGTGACGGAGGGTTGCAT
CCCGCCCCTGTCGGACTTGCTAGAAGTGCACGACGCAAAGATTGTTACCG
TGGCCCTGGAAGGTCTCGAGAACATTCTCAAGGAAGCTGCGTGGGCAATC
TCGAACGCCACCAGCGGCGGCAAGCCTGAGCAGATCAAGTACCTCGTGAC
GGAGGGTTGCATCCCGCCCCTGTCGGACTTGCTAGAAGTGCACGACGCAA
AGATTGTTACCGTGGCCCTGGAAGGTCTCGAGAACATTCTCAAGACCGGC
GACACCGAGGCGAAGGCACAAGGCCAGGAGATGAACCAGATGGCCACGTA
CATCATGGAGTGCGGAGGAATGGAGCGCATCGAACAGCTCCAGATGCACG
ACAACAACAACATATACAACAAGGCCCTGAAGCTGCTGGAGAGGTATTTC
GGCGTAGAGGACGAGGAGGACAACGGTATCGCGCCCGTCGAGACAGAGGG
GGCCCAACAATTCGCTTTCGGGCAGCCGGCGCAAGCGGGGGCCGACGGCA
CCTTCGGCGCCCAACCCGGTCAGGGCGGATTCAACTTCGGATGAACCGGC
GACACCGAGGCGAAGGCACAAGGCCAGGAGATGAACCAGATGGCCACGTA
CATCATGGAGTGCGGAGGAATGGAGCGCATCGAACAGCTCCAGATGCACG
ACAACAACAACATATACAACAAGGCCCTGAAGCTGCTGGAGAGGTATTTC
GGCGTAGAGGACGAGGAGGACAACGGTATCGCGCCCGTCGAGACAGAGGG
GGCCCAACAATTCGCTTTCGGGCAGCCGGCGCAAGCGGGGGCCGACGGCA
CCTTCGGCGCCCAACCCGGTCAGGGCGGATTCAACTTCGGATGA
back to top