mRNA_L-elsbetiae_contig5650.13995.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5650.13995.1
Unique NamemRNA_L-elsbetiae_contig5650.13995.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5650.13995.1 vs. uniprot
Match: D8LDF6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDF6_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.020e-26
Identity = 58/67 (86.57%), Postives = 63/67 (94.03%), Query Frame = 1 
Query:   22 IGELEGALEIALKAAGGVHRQLLELGLSCEDLGETNVHLSVQAKKAPAEDKLALEVAGETIEAVVGV 222
            IGELE ALEIALKAAGGVHR+LLELGLSCEDLG+T+VHLSV A++APAEDK AL VAGETIEAVVGV
Sbjct:  167 IGELEDALEIALKAAGGVHRKLLELGLSCEDLGKTSVHLSVAAQEAPAEDKPALAVAGETIEAVVGV 233
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5650.13995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDF6_ECTSI2.020e-2686.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5650contigL-elsbetiae_contig5650:1833..4054 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size224
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816601.3262284-CDS-L-elsbetiae_contig5650:1832..20001622816601.3262284-CDS-L-elsbetiae_contig5650:1832..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 1833..2000 +
1691683676.8564196-CDS-L-elsbetiae_contig5650:1832..20001691683676.8564196-CDS-L-elsbetiae_contig5650:1832..2000Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 1833..2000 +
1622816601.3368185-CDS-L-elsbetiae_contig5650:3998..40521622816601.3368185-CDS-L-elsbetiae_contig5650:3998..4052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 3999..4052 +
1691683676.8685813-CDS-L-elsbetiae_contig5650:3998..40521691683676.8685813-CDS-L-elsbetiae_contig5650:3998..4052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5650 3999..4052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5650.13995.1prot_L-elsbetiae_contig5650.13995.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5650 1833..4052 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5650.13995.1

>prot_L-elsbetiae_contig5650.13995.1 ID=prot_L-elsbetiae_contig5650.13995.1|Name=mRNA_L-elsbetiae_contig5650.13995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
SRIPIPCIGELEGALEIALKAAGGVHRQLLELGLSCEDLGETNVHLSVQA
KKAPAEDKLALEVAGETIEAVVGV
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mRNA from alignment at L-elsbetiae_contig5650:1833..4054+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5650.13995.1 ID=mRNA_L-elsbetiae_contig5650.13995.1|Name=mRNA_L-elsbetiae_contig5650.13995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2222bp|location=Sequence derived from alignment at L-elsbetiae_contig5650:1833..4054+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCGTATTCCAATACCTTGTATAGGAGAACTAGAGGGTGCGCTGGAGAT
CGCTCTGAAGGCGGCGGGCGGCGTCCACCGGCAGCTGCTAGAGCTTGGCC
TATCGTGCGAAGACCTGGGGGAAACCAACGTGCACCTCTCTGTACAGGCA
AAGAAGGCACCTGCCGAGGTATGCCTGCTCTTGCGCGGCGTTATTGTAGT
ATGTAGATGATGGAGAGGGGACGGGCGGGGACTTGTTGCCCATCATTGGA
CAGACCGAACAACAGCTAATACCACATCTCGGTAGAACGAGTGTGTTTAG
TGTGTTTAGTGTGTGTGTGTTTTTTTGTTATATAAATGTTCTACAAATGG
GCCAACCATCAACATATATCAGATATCGGCAGAAAAGGTGTGTGTTTGGG
TAAGGGTGTGGGTGTGGGTGCCTGCGTATGTATGTGTGTTTTACTTGGAT
GTTTATTGCACACCTGTGTGTGTTTTATTCGGCAAGCGGCCTGGGCGGGA
GCGCGATCGTTCCGTTGACTGTCGTGTTTATGGCCTCCGCGTTGACCTTC
TCCAACAACCGAAGCCAAGCAAGCTACCTTTGTCTGTCTCTTTGGATCGA
CCTACTATGTATGCGTGACATTTCATATTTTGCCCGATCCAAGTTCCAGT
CTCCCGCGTATTTCGCTCGTGCCGTAAGTCAACGTGGTGATATCTCGGCG
CGCTCTTCTTGCCCCCCGCATCCTTTAGGCCGCTCTTGATTTTAATCACT
TTTCCAATTGAACGTGAGCGGTCTACCGTCCAACTTGTGAAGAGGTCGTT
CGTTCCAGGGGAGCTCTGTTGTAGACACACTACATATCCCTCCCTCACCG
CCCCAGACTACAATGTTTTGCCAGAAACAAGGCATCGCGGCATAGAACTC
CCAAATGAGTCGTTTGTATGGCGAAAATAGGGCCGTTGTGTTGTTTTGTT
CTTGGCGTGTTTGTGTACCACCGCTCGACACGTTGTCTTCTTTTCCTGCC
CACTCGAAAGCGTATTAATACAAGGTTTGGGGCGCTAGCACGCGCCCCCG
CTTGTATTGTAAGCGCATCCAACGTATTGTAGAGTGTAATTGGAAAACAC
AAACAGCATTTGATTTTTGAACATCTAATAGATAGATATTTATAGAGATC
TAGATATACTTACATACACTTCCGAAAAGCACGTCAGCAGGAGGATAACA
TGGAGTGACATGAAGAATGTGCAACATAACTGCCCTCCTCCTTGTATTGA
AGGCGCTGCTGCGAGCGTAGCCGCGGGCTCAACAATACGCATACATAGAG
TGCCTCGCAGGGTACCCATAGCTACACATCTACACATGCTGCATCTACAT
ATCTACACAGCTGCTAGCAGTCTGCTCGCAATTGACCCCTTCGGCGCGTT
CACCATCTCGGCGAATACAAGCGGAGTTTCAAGCGACAGCCAAATTTCCA
AAAACAAAACTGTGTGGTAGAGATACATGTAGAAAAGTACGTAGTGAGAT
ACATAGCTTGATAGAGAGTCCATCGCTCTCACAAGAGAGAAAGGTTTAAA
CCACAGTGGAGGAAGCGCGAGTAGCATAGGGGGAAGCACGAGTAGCAATG
CACAGACGCACGCGAGGGATACCTCGGGGAAGCAACGCCGAGAGTTTCCG
GATGGAAATAAAAAATAAGAGCCCTCTCAGACGAAATGCACCGAGAAAAA
GAGAGACAAACAGAGAGAGAGAAAGACACTGAGAGAAAGGGGAAAGAGAG
ACCGAGGTGAGAGAGAGAAGCGAATGCTCGAATGCACTGTGAAGTGCACT
GCAGGCAGCCACACGCTAGGGGAACCTCGGGAGAGAAAGAGAGTAGAGAA
GGCAGATGAAGGAGGCAGACCGCAATTTTCAGAATTCCGGACAGAGAACC
AAACGAAGCCACCACAGCGATGACAGGGAGCGACGCTCAGAATAATTGTA
AATTGAAATAGATTTATCGTGCTAGTTTAAGAGTGTCGCGCCAGTCAGTC
ACGTGCCGGAGTAGGGTAGGCTTGCCAAGTCTTGCAGCCATCAAGGTTTT
GGTCTGAAACACGCTTTTCTTACCTCCCCTCCTCTCCCCTTCCGCCGACT
GCCCTTGCTCTCTTCGGCTACTACTGTTTGTTGCTGGCGTGTGGCATATG
ACGTGTGGCATGGCAGGACAAGCTCGCGCTGGAGGTCGCCGGGGAGACCA
TCGAGGCGGTGGTGGGCGTGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5650:1833..4054+

>mRNA_L-elsbetiae_contig5650.13995.1 ID=mRNA_L-elsbetiae_contig5650.13995.1|Name=mRNA_L-elsbetiae_contig5650.13995.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig5650:1833..4054+ (Laminarionema elsbetiae ELsaHSoW15)
AGCCGTATTCCAATACCTTGTATAGGAGAACTAGAGGGTGCGCTGGAGAT
CGCTCTGAAGGCGGCGGGCGGCGTCCACCGGCAGCTGCTAGAGCTTGGCC
TATCGTGCGAAGACCTGGGGGAAACCAACGTGCACCTCTCTGTACAGGCA
AAGAAGGCACCTGCCGAGAGCCGTATTCCAATACCTTGTATAGGAGAACT
AGAGGGTGCGCTGGAGATCGCTCTGAAGGCGGCGGGCGGCGTCCACCGGC
AGCTGCTAGAGCTTGGCCTATCGTGCGAAGACCTGGGGGAAACCAACGTG
CACCTCTCTGTACAGGCAAAGAAGGCACCTGCCGAGGACAAGCTCGCGCT
GGAGGTCGCCGGGGAGACCATCGAGGCGGTGGTGGGCGTGGACAAGCTCG
CGCTGGAGGTCGCCGGGGAGACCATCGAGGCGGTGGTGGGCGTG
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