mRNA_L-elsbetiae_contig5640.13984.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5640.13984.1
Unique NamemRNA_L-elsbetiae_contig5640.13984.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5640.13984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5640contigL-elsbetiae_contig5640:44..417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.1714666-CDS-L-elsbetiae_contig5640:43..2381622816600.1714666-CDS-L-elsbetiae_contig5640:43..238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5640 44..238 +
1691683676.021844-CDS-L-elsbetiae_contig5640:43..2381691683676.021844-CDS-L-elsbetiae_contig5640:43..238Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5640 44..238 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.18636-UTR-L-elsbetiae_contig5640:238..4171622816600.18636-UTR-L-elsbetiae_contig5640:238..417Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5640 239..417 +
1691683676.0326583-UTR-L-elsbetiae_contig5640:238..4171691683676.0326583-UTR-L-elsbetiae_contig5640:238..417Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5640 239..417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5640.13984.1prot_L-elsbetiae_contig5640.13984.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5640 44..238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5640.13984.1

>prot_L-elsbetiae_contig5640.13984.1 ID=prot_L-elsbetiae_contig5640.13984.1|Name=mRNA_L-elsbetiae_contig5640.13984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
YLISGGAHYVTQFRLQGKLFKYDCTKGGRTACIGGGTFFDQGWYSRKQVL
YVYVRTGLLSSGWG*
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mRNA from alignment at L-elsbetiae_contig5640:44..417+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5640.13984.1 ID=mRNA_L-elsbetiae_contig5640.13984.1|Name=mRNA_L-elsbetiae_contig5640.13984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=374bp|location=Sequence derived from alignment at L-elsbetiae_contig5640:44..417+ (Laminarionema elsbetiae ELsaHSoW15)
TATCTCATCTCGGGGGGCGCTCACTACGTCACACAGTTCCGTCTGCAGGG
GAAGTTGTTCAAGTATGATTGTACTAAAGGCGGTCGCACTGCTTGTATCG
GGGGTGGCACTTTCTTCGATCAAGGTTGGTACTCCAGAAAACAGGTCCTG
TACGTGTATGTGAGGACGGGCCTTCTATCTAGTGGTTGGGGATAGAACGA
GAACCTAGCAGGAACTTGCCGGGCAACGACTCAGGTTTCAGCGCTACATA
TACAATGCTTAATTATATTTCGCCGCGCCTTGGGGAGTCGTGGCTGGGGA
TAGTACGGGAGAACCTAGCGGGAACTTGCCGGGCAACGGCTCAGGTCTCG
GCGCTGCCTACCTGTGGGCCCTTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5640:44..417+

>mRNA_L-elsbetiae_contig5640.13984.1 ID=mRNA_L-elsbetiae_contig5640.13984.1|Name=mRNA_L-elsbetiae_contig5640.13984.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig5640:44..417+ (Laminarionema elsbetiae ELsaHSoW15)
TATCTCATCTCGGGGGGCGCTCACTACGTCACACAGTTCCGTCTGCAGGG
GAAGTTGTTCAAGTATGATTGTACTAAAGGCGGTCGCACTGCTTGTATCG
GGGGTGGCACTTTCTTCGATCAAGGTTGGTACTCCAGAAAACAGGTCCTG
TACGTGTATGTGAGGACGGGCCTTCTATCTAGTGGTTGGGGATAGTATCT
CATCTCGGGGGGCGCTCACTACGTCACACAGTTCCGTCTGCAGGGGAAGT
TGTTCAAGTATGATTGTACTAAAGGCGGTCGCACTGCTTGTATCGGGGGT
GGCACTTTCTTCGATCAAGGTTGGTACTCCAGAAAACAGGTCCTGTACGT
GTATGTGAGGACGGGCCTTCTATCTAGTGGTTGGGGATAG
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