mRNA_L-elsbetiae_contig564.13983.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig564.13983.1
Unique NamemRNA_L-elsbetiae_contig564.13983.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig564.13983.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig564contigL-elsbetiae_contig564:24604..25155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size552
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig564.13983.1prot_L-elsbetiae_contig564.13983.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig564 24606..24959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.11027-UTR-L-elsbetiae_contig564:24603..246051622816600.11027-UTR-L-elsbetiae_contig564:24603..24605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig564 24604..24605 +
1691683675.9876158-UTR-L-elsbetiae_contig564:24603..246051691683675.9876158-UTR-L-elsbetiae_contig564:24603..24605Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig564 24604..24605 +
1622816600.1367137-UTR-L-elsbetiae_contig564:24959..251551622816600.1367137-UTR-L-elsbetiae_contig564:24959..25155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig564 24960..25155 +
1691683676.011009-UTR-L-elsbetiae_contig564:24959..251551691683676.011009-UTR-L-elsbetiae_contig564:24959..25155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig564 24960..25155 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.122692-CDS-L-elsbetiae_contig564:24605..249591622816600.122692-CDS-L-elsbetiae_contig564:24605..24959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig564 24606..24959 +
1691683676.0002897-CDS-L-elsbetiae_contig564:24605..249591691683676.0002897-CDS-L-elsbetiae_contig564:24605..24959Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig564 24606..24959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig564.13983.1

>prot_L-elsbetiae_contig564.13983.1 ID=prot_L-elsbetiae_contig564.13983.1|Name=mRNA_L-elsbetiae_contig564.13983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MILGRRPSPMPRTASFSEHRHRSATTAAAGASALRGVAEDEVEVGGDITG
DRGGGGERREGGALTDKEIPPLQRRSSGVVAPAGTARRLSDRDAREKSED
EEADPQQDEKREEHPRG*
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mRNA from alignment at L-elsbetiae_contig564:24604..25155+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig564.13983.1 ID=mRNA_L-elsbetiae_contig564.13983.1|Name=mRNA_L-elsbetiae_contig564.13983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig564:24604..25155+ (Laminarionema elsbetiae ELsaHSoW15)
CCATGATCCTGGGAAGGCGGCCTAGCCCCATGCCCCGGACGGCGTCCTTC
TCTGAACACCGGCACAGGTCGGCGACAACGGCGGCCGCGGGCGCGTCAGC
CCTGCGAGGGGTGGCAGAGGACGAGGTCGAGGTCGGCGGCGATATCACAG
GCGACCGGGGCGGCGGCGGCGAGAGGCGAGAGGGCGGGGCCCTCACGGAC
AAGGAGATACCGCCGCTGCAGCGACGGTCGTCTGGGGTTGTTGCTCCTGC
GGGCACCGCGAGGCGTCTCTCCGACAGAGACGCCCGGGAGAAGAGCGAGG
ACGAGGAGGCAGACCCACAGCAGGACGAAAAGCGAGAGGAGCATCCCCGA
GGCTAAAATAAAAAACAAAAAAGATGCTCGCGGTGGGGACAGAGAGTGAG
TGAGGTGGCATATGACGTAGTAAACCCCCGCTAAATAGTTATTTCGCGTC
GAGCCTTTTGTTTCGGTTTGTGGCGTCCAAGCCGGAGGGCCCCGGGCAGG
GTGGGTAAAACGATGTGCCGGCGAAAATCGAGGTTGTTCCATCCTCGGCG
AC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig564:24604..25155+

>mRNA_L-elsbetiae_contig564.13983.1 ID=mRNA_L-elsbetiae_contig564.13983.1|Name=mRNA_L-elsbetiae_contig564.13983.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig564:24604..25155+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCCTGGGAAGGCGGCCTAGCCCCATGCCCCGGACGGCGTCCTTCTC
TGAACACCGGCACAGGTCGGCGACAACGGCGGCCGCGGGCGCGTCAGCCC
TGCGAGGGGTGGCAGAGGACGAGGTCGAGGTCGGCGGCGATATCACAGGC
GACCGGGGCGGCGGCGGCGAGAGGCGAGAGGGCGGGGCCCTCACGGACAA
GGAGATACCGCCGCTGCAGCGACGGTCGTCTGGGGTTGTTGCTCCTGCGG
GCACCGCGAGGCGTCTCTCCGACAGAGACGCCCGGGAGAAGAGCGAGGAC
GAGGAGGCAGACCCACAGCAGGACGAAAAGCGAGAGGAGCATCCCCGAGG
CTAAATGATCCTGGGAAGGCGGCCTAGCCCCATGCCCCGGACGGCGTCCT
TCTCTGAACACCGGCACAGGTCGGCGACAACGGCGGCCGCGGGCGCGTCA
GCCCTGCGAGGGGTGGCAGAGGACGAGGTCGAGGTCGGCGGCGATATCAC
AGGCGACCGGGGCGGCGGCGGCGAGAGGCGAGAGGGCGGGGCCCTCACGG
ACAAGGAGATACCGCCGCTGCAGCGACGGTCGTCTGGGGTTGTTGCTCCT
GCGGGCACCGCGAGGCGTCTCTCCGACAGAGACGCCCGGGAGAAGAGCGA
GGACGAGGAGGCAGACCCACAGCAGGACGAAAAGCGAGAGGAGCATCCCC
GAGGCTAA
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