mRNA_L-elsbetiae_contig564.13980.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig564.13980.1
Unique NamemRNA_L-elsbetiae_contig564.13980.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig564.13980.1 vs. uniprot
Match: D7G0C1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0C1_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 2.150e-17
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1 
Query:    1 VILSASSPDDEALVLGAKYFGFEFINRIDSNAILHTWDVTAPPS 132
            V+LSASSPDDEALVLGAKYFGFEF+NRIDS+AILHTWDV+ PPS
Sbjct:  656 VMLSASSPDDEALVLGAKYFGFEFVNRIDSSAILHTWDVSTPPS 699
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BLAST of mRNA_L-elsbetiae_contig564.13980.1 vs. uniprot
Match: A0A6H5JC88_9PHAE (PhoLip_ATPase_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC88_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.010e-16
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 VILSASSPDDEALVLGAKYFGFEFINRIDSNAILHTWDVTAPPS 132
            V+LSASSPDDEALVLGAKYFGFEF+NRIDS+AILHTWD + PPS
Sbjct:  599 VMLSASSPDDEALVLGAKYFGFEFVNRIDSSAILHTWDFSTPPS 642
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BLAST of mRNA_L-elsbetiae_contig564.13980.1 vs. uniprot
Match: A0A836CFX1_9STRA (Phospholipid-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX1_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.950e-9
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    1 VILSASSPDDEALVLGAKYFGFEFINRIDSNAILHTWDVTAP 126
            V+LSASSPDDEALVLGAKYFGFEF++R D+ A++    V AP
Sbjct:  603 VVLSASSPDDEALVLGAKYFGFEFLDRADTTALIRRTVVHAP 644
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BLAST of mRNA_L-elsbetiae_contig564.13980.1 vs. uniprot
Match: D7FU89_ECTSI (Phospholipid-transporting ATPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU89_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 6.060e-8
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:    1 VILSASSPDDEALVLGAKYFGFEFINRIDSNAILHTWDVTAPPSSS 138
            ++LSASSPDDEALVLGAKYFG EF  RID+ A++    + +P S S
Sbjct:  566 IVLSASSPDDEALVLGAKYFGVEFTERIDTTAVIRRTPMPSPLSPS 611
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BLAST of mRNA_L-elsbetiae_contig564.13980.1 vs. uniprot
Match: A0A7S1Y0K7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1Y0K7_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.740e-5
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:    1 VILSASSPDDEALVLGAKYFGFEFINRIDSNAILHT 108
            V  SASSPDDEALV GAKYFG+ F +RID  AI+ T
Sbjct:    8 VKFSASSPDDEALVCGAKYFGYFFKDRIDGKAIIET 43
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig564.13980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0C1_ECTSI2.150e-1788.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC88_9PHAE1.010e-1686.36PhoLip_ATPase_N domain-containing protein n=1 Tax=... [more]
A0A836CFX1_9STRA4.950e-969.05Phospholipid-transporting ATPase n=1 Tax=Tribonema... [more]
D7FU89_ECTSI6.060e-860.87Phospholipid-transporting ATPase n=1 Tax=Ectocarpu... [more]
A0A7S1Y0K7_9STRA2.740e-569.44Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig564contigL-elsbetiae_contig564:2331..2660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.3
Seed ortholog evalue9.9e-15
Seed eggNOG ortholog2880.D7G0C1
KEGG koko:K01530,ko:K14802
KEGG TC3.A.3.8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.phospholipid-translocating ATPase activity
EggNOG OGsCOG0474@1,KOG0206@2759
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-02_001010.1
EC3.6.3.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size332
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816600.0600457-CDS-L-elsbetiae_contig564:2330..26601622816600.0600457-CDS-L-elsbetiae_contig564:2330..2660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig564 2331..2660 +
1691683675.9656777-CDS-L-elsbetiae_contig564:2330..26601691683675.9656777-CDS-L-elsbetiae_contig564:2330..2660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig564 2331..2660 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig564.13980.1prot_L-elsbetiae_contig564.13980.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig564 2331..2660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig564.13980.1

>prot_L-elsbetiae_contig564.13980.1 ID=prot_L-elsbetiae_contig564.13980.1|Name=mRNA_L-elsbetiae_contig564.13980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
VILSASSPDDEALVLGAKYFGFEFINRIDSNAILHTWDVTAPPSSSSSLS
STTMDNKGSKDSTITTIAAPATAPTAAGVDAGATATAPGGEGAVGVRVGT
DPAGANGKGE
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mRNA from alignment at L-elsbetiae_contig564:2331..2660+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig564.13980.1 ID=mRNA_L-elsbetiae_contig564.13980.1|Name=mRNA_L-elsbetiae_contig564.13980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig564:2331..2660+ (Laminarionema elsbetiae ELsaHSoW15)
GTGATCCTGTCGGCGTCGAGCCCGGACGACGAGGCGCTCGTGCTCGGCGC
CAAGTACTTCGGGTTCGAGTTCATCAACCGGATCGACAGCAACGCCATCC
TGCACACCTGGGACGTCACCGCGCCGCCTTCCTCCTCCTCCTCCCTCTCC
TCTACGACCATGGACAACAAGGGCAGCAAAGATAGCACCATCACTACCAT
CGCCGCCCCTGCTACGGCCCCCACCGCCGCAGGCGTTGATGCCGGTGCTA
CCGCGACCGCTCCCGGTGGCGAGGGCGCCGTCGGGGTGCGAGTGGGGACA
GACCCAGCCGGTGCCAACGGTAAAGGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig564:2331..2660+

>mRNA_L-elsbetiae_contig564.13980.1 ID=mRNA_L-elsbetiae_contig564.13980.1|Name=mRNA_L-elsbetiae_contig564.13980.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig564:2331..2660+ (Laminarionema elsbetiae ELsaHSoW15)
GTGATCCTGTCGGCGTCGAGCCCGGACGACGAGGCGCTCGTGCTCGGCGC
CAAGTACTTCGGGTTCGAGTTCATCAACCGGATCGACAGCAACGCCATCC
TGCACACCTGGGACGTCACCGCGCCGCCTTCCTCCTCCTCCTCCCTCTCC
TCTACGACCATGGACAACAAGGGCAGCAAAGATAGCACCATCACTACCAT
CGCCGCCCCTGCTACGGCCCCCACCGCCGCAGGCGTTGATGCCGGTGCTA
CCGCGACCGCTCCCGGTGGCGAGGGCGCCGTCGGGGTGCGAGTGGGGACA
GACCCAGCCGGTGCCAACGGTAAAGGCGAGGTGATCCTGTCGGCGTCGAG
CCCGGACGACGAGGCGCTCGTGCTCGGCGCCAAGTACTTCGGGTTCGAGT
TCATCAACCGGATCGACAGCAACGCCATCCTGCACACCTGGGACGTCACC
GCGCCGCCTTCCTCCTCCTCCTCCCTCTCCTCTACGACCATGGACAACAA
GGGCAGCAAAGATAGCACCATCACTACCATCGCCGCCCCTGCTACGGCCC
CCACCGCCGCAGGCGTTGATGCCGGTGCTACCGCGACCGCTCCCGGTGGC
GAGGGCGCCGTCGGGGTGCGAGTGGGGACAGACCCAGCCGGTGCCAACGG
TAAAGGCGAG
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