mRNA_L-elsbetiae_contig5623.13963.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5623.13963.1
Unique NamemRNA_L-elsbetiae_contig5623.13963.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5623.13963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5623contigL-elsbetiae_contig5623:482..1576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size751
Cds size747
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816597.8530812-CDS-L-elsbetiae_contig5623:483..6341622816597.8530812-CDS-L-elsbetiae_contig5623:483..634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5623 484..634 -
1691683674.3317542-CDS-L-elsbetiae_contig5623:483..6341691683674.3317542-CDS-L-elsbetiae_contig5623:483..634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5623 484..634 -
1622816597.8642404-CDS-L-elsbetiae_contig5623:980..15761622816597.8642404-CDS-L-elsbetiae_contig5623:980..1576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5623 981..1576 -
1691683674.351074-CDS-L-elsbetiae_contig5623:980..15761691683674.351074-CDS-L-elsbetiae_contig5623:980..1576Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5623 981..1576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5623.13963.1prot_L-elsbetiae_contig5623.13963.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5623 484..1576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5623.13963.1

>prot_L-elsbetiae_contig5623.13963.1 ID=prot_L-elsbetiae_contig5623.13963.1|Name=mRNA_L-elsbetiae_contig5623.13963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp
FAVATLPTSLADSGCLMAKWDDHVARRLRCTLVLVALVTSTRTGVCFLTS
TSLIRWRHRESARSIRPTASRLVHLNCRRSRSLLSSSVSSSGEVVGFSSR
GGGIGGSGTGGGASSASSSTSRGSRRSSRNTCSITDTTLAAGGAAAAGSE
TREGEGVAAAAATAAAAFEGRGGGGRSSAGNPAASPAACEEREGQVGSRG
PGMLSRGMAATGRFFANESTRKSSRRRGSGKLKGEGAVVGERRAAGQES
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mRNA from alignment at L-elsbetiae_contig5623:482..1576-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5623.13963.1 ID=mRNA_L-elsbetiae_contig5623.13963.1|Name=mRNA_L-elsbetiae_contig5623.13963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1095bp|location=Sequence derived from alignment at L-elsbetiae_contig5623:482..1576- (Laminarionema elsbetiae ELsaHSoW15)
TTTGCAGTGGCCACACTGCCTACATCGCTCGCCGACTCTGGCTGTCTCAT
GGCGAAATGGGACGACCATGTGGCCAGGAGGCTACGCTGCACTCTAGTTT
TGGTTGCCTTGGTTACCAGTACCCGCACGGGCGTGTGCTTCCTAACATCA
ACATCGCTCATCCGCTGGCGACACCGGGAGTCTGCGCGCTCCATCCGCCC
CACTGCCAGCCGTTTGGTCCACCTCAACTGCAGAAGAAGTCGTTCGCTTT
TGTCGTCGTCGGTTTCTTCATCGGGTGAAGTTGTTGGCTTCTCGTCGAGA
GGCGGCGGAATCGGCGGTTCCGGCACCGGCGGCGGTGCCAGCAGCGCAAG
TAGCAGCACGAGCCGCGGTAGCAGGAGGAGTAGCCGGAACACTTGCTCGA
TCACCGATACAACCTTGGCCGCCGGGGGTGCTGCTGCTGCTGGCAGTGAA
ACACGAGAAGGAGAAGGGGTGGCGGCAGCGGCGGCCACGGCAGCGGCGGC
GTTTGAAGGGCGAGGCGGTGGGGGCAGGAGCAGCGCCGGGAACCCTGCCG
CAAGCCCTGCGGCGTGTGAAGAAAGAGAAGGCCAGGTGGGATCGAGGTAA
GCGCAAACACGCCAGTGGAAACGGCGCGACAGCAGCAGCAGTCTACCGTC
CTGAATAGAGAAGGCGAGGAGGGCTGCTCGTTGACCGTGTTCCCATGGTT
GTACACACTCCCCCCCCCTCTCTCTCTCCTCTCGCGCCGCTGGCGACGCC
CCATGTACACATGTATCTTTGGGATTAACGGGGGCAACCCCCGTCGCTGC
AGGTTCACGAAATACCGGGTGGTTGCTCGAACCTTCATCATCATCGCGAG
AGGCATGCTCGCCCCCTGACATATGCTCACACTACATAGCGCACTCACTC
CGCTCTCTCGCCTCCCCCGTCTGCGCCCCTCCACCGCCCCAGGGGTCCAG
GGATGCTTTCCAGGGGCATGGCGGCGACGGGACGGTTTTTCGCGAACGAA
AGCACGCGAAAATCCTCGCGCCGCCGAGGTAGTGGCAAGCTCAAAGGCGA
AGGCGCAGTCGTAGGAGAGCGGCGGGCGGCGGGGCAAGAGAGTGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5623:482..1576-

>mRNA_L-elsbetiae_contig5623.13963.1 ID=mRNA_L-elsbetiae_contig5623.13963.1|Name=mRNA_L-elsbetiae_contig5623.13963.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig5623:482..1576- (Laminarionema elsbetiae ELsaHSoW15)
TTTGCAGTGGCCACACTGCCTACATCGCTCGCCGACTCTGGCTGTCTCAT
GGCGAAATGGGACGACCATGTGGCCAGGAGGCTACGCTGCACTCTAGTTT
TGGTTGCCTTGGTTACCAGTACCCGCACGGGCGTGTGCTTCCTAACATCA
ACATCGCTCATCCGCTGGCGACACCGGGAGTCTGCGCGCTCCATCCGCCC
CACTGCCAGCCGTTTGGTCCACCTCAACTGCAGAAGAAGTCGTTCGCTTT
TGTCGTCGTCGGTTTCTTCATCGGGTGAAGTTGTTGGCTTCTCGTCGAGA
GGCGGCGGAATCGGCGGTTCCGGCACCGGCGGCGGTGCCAGCAGCGCAAG
TAGCAGCACGAGCCGCGGTAGCAGGAGGAGTAGCCGGAACACTTGCTCGA
TCACCGATACAACCTTGGCCGCCGGGGGTGCTGCTGCTGCTGGCAGTGAA
ACACGAGAAGGAGAAGGGGTGGCGGCAGCGGCGGCCACGGCAGCGGCGGC
GTTTGAAGGGCGAGGCGGTGGGGGCAGGAGCAGCGCCGGGAACCCTGCCG
CAAGCCCTGCGGCGTGTGAAGAAAGAGAAGGCCAGGTGGGATCGAGTTTG
CAGTGGCCACACTGCCTACATCGCTCGCCGACTCTGGCTGTCTCATGGCG
AAATGGGACGACCATGTGGCCAGGAGGCTACGCTGCACTCTAGTTTTGGT
TGCCTTGGTTACCAGTACCCGCACGGGCGTGTGCTTCCTAACATCAACAT
CGCTCATCCGCTGGCGACACCGGGAGTCTGCGCGCTCCATCCGCCCCACT
GCCAGCCGTTTGGTCCACCTCAACTGCAGAAGAAGTCGTTCGCTTTTGTC
GTCGTCGGTTTCTTCATCGGGTGAAGTTGTTGGCTTCTCGTCGAGAGGCG
GCGGAATCGGCGGTTCCGGCACCGGCGGCGGTGCCAGCAGCGCAAGTAGC
AGCACGAGCCGCGGTAGCAGGAGGAGTAGCCGGAACACTTGCTCGATCAC
CGATACAACCTTGGCCGCCGGGGGTGCTGCTGCTGCTGGCAGTGAAACAC
GAGAAGGAGAAGGGGTGGCGGCAGCGGCGGCCACGGCAGCGGCGGCGTTT
GAAGGGCGAGGCGGTGGGGGCAGGAGCAGCGCCGGGAACCCTGCCGCAAG
CCCTGCGGCGTGTGAAGAAAGAGAAGGCCAGGTGGGATCGAGGGGTCCAG
GGATGCTTTCCAGGGGCATGGCGGCGACGGGACGGTTTTTCGCGAACGAA
AGCACGCGAAAATCCTCGCGCCGCCGAGGTAGTGGCAAGCTCAAAGGCGA
AGGCGCAGTCGTAGGAGAGCGGCGGGCGGCGGGGCAAGAGAGTGGGTCCA
GGGATGCTTTCCAGGGGCATGGCGGCGACGGGACGGTTTTTCGCGAACGA
AAGCACGCGAAAATCCTCGCGCCGCCGAGGTAGTGGCAAGCTCAAAGGCG
AAGGCGCAGTCGTAGGAGAGCGGCGGGCGGCGGGGCAAGAGAGT
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